Literature DB >> 21580415

3,5-Dicarboxyanilinium nitrate dihydrate.

Wen-Xian Liang1, Yun-Ti Zhu.   

Abstract

In the crystal of the title compound, C(8)H(8)NO(4) (+)·NO(3) (-)·2H(2)O, the 5-ammonio-isophthalic acid cations, the nitrate anions and the water mol-ecules are linked by N-H⋯O, O-H⋯O and C-H ⋯O hydrogen bonds into a three-dimensional network. The structure is further stabilized by aromatic π-π stacking inter-actions, with centroid-centroid separations of 3.827 (2) Å.

Entities:  

Year:  2010        PMID: 21580415      PMCID: PMC2983508          DOI: 10.1107/S1600536810005362

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of 5-amino­isophthalic acid hemihydrate, see: Dobson et al. (1998 ▶). For the use of 5-amino­isophthalic acid as a ligand, see: Liao et al. (2004 ▶).

Experimental

Crystal data

C8H8NO4NO3 −·2H2O M = 280.20 Monoclinic, a = 8.3436 (17) Å b = 8.6234 (17) Å c = 16.862 (3) Å β = 97.31 (3)° V = 1203.4 (4) Å3 Z = 4 Mo Kα radiation μ = 0.14 mm−1 T = 293 K 0.35 × 0.25 × 0.10 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.960, T max = 0.986 12169 measured reflections 2753 independent reflections 1905 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.129 S = 1.07 2753 reflections 190 parameters ? Δρmax = 0.28 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrystalClear (Rigaku 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: PRPKAPPA (Ferguson, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810005362/rz2414sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810005362/rz2414Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H8NO4+·NO3·2H2OF(000) = 584
Mr = 280.20Dx = 1.547 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1753 reflections
a = 8.3436 (17) Åθ = 3.1–27.5°
b = 8.6234 (17) ŵ = 0.14 mm1
c = 16.862 (3) ÅT = 293 K
β = 97.31 (3)°Prism, colourless
V = 1203.4 (4) Å30.35 × 0.25 × 0.10 mm
Z = 4
Rigaku SCXmini diffractometer2753 independent reflections
Radiation source: fine-focus sealed tube1905 reflections with I > 2σ(I)
graphiteRint = 0.055
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.2°
CCD profile fitting scansh = −10→10
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −11→11
Tmin = 0.960, Tmax = 0.986l = −21→21
12169 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.054w = 1/[σ2(Fo2) + (0.0423P)2 + 0.7735P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.129(Δ/σ)max < 0.001
S = 1.07Δρmax = 0.28 e Å3
2753 reflectionsΔρmin = −0.24 e Å3
190 parametersExtinction correction: SHELXL97 (Sheldrick, 2008)
0 restraintsExtinction coefficient: 0.0014 (1)
Primary atom site location: structure-invariant direct methods
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O40.4952 (2)0.14675 (19)0.42859 (10)0.0442 (5)
H40.52750.06030.44320.066*
N10.3108 (2)0.6452 (2)0.29415 (11)0.0328 (5)
H1A0.36510.58130.26580.049*
H1B0.36320.73500.30100.049*
H1C0.21260.66140.26820.049*
C20.3575 (3)0.4279 (2)0.38793 (13)0.0280 (5)
H20.40700.37440.34980.034*
O10.1136 (3)0.6025 (2)0.62566 (11)0.0545 (6)
H10.06690.65590.65580.082*
O30.3885 (3)0.1368 (2)0.54276 (11)0.0513 (5)
C40.2667 (3)0.4405 (2)0.51780 (13)0.0296 (5)
H4A0.25560.39460.56670.036*
C10.2969 (3)0.5756 (2)0.37216 (13)0.0264 (5)
C50.2069 (3)0.5891 (3)0.50071 (14)0.0299 (5)
C60.2225 (3)0.6570 (2)0.42699 (13)0.0300 (5)
H60.18300.75630.41520.036*
O20.0772 (3)0.8101 (2)0.54705 (12)0.0605 (6)
C30.3432 (3)0.3610 (2)0.46132 (13)0.0275 (5)
C70.1260 (3)0.6799 (3)0.55994 (14)0.0356 (6)
O50.2218 (2)−0.0029 (2)0.30373 (12)0.0461 (5)
O60.4607 (2)−0.06093 (19)0.27628 (11)0.0441 (5)
O70.3495 (2)0.15470 (19)0.23390 (12)0.0460 (5)
N20.3433 (2)0.0312 (2)0.27105 (12)0.0333 (5)
C80.4106 (3)0.2034 (3)0.47971 (13)0.0304 (5)
O90.9920 (2)0.7569 (2)0.73715 (12)0.0422 (5)
O80.8512 (3)0.5594 (3)0.84014 (16)0.0667 (7)
H9A0.916 (5)0.828 (5)0.729 (2)0.091 (13)*
H8A0.904 (4)0.500 (5)0.885 (2)0.089 (13)*
H8B0.781 (6)0.612 (5)0.861 (3)0.111 (16)*
H9B0.949 (6)0.706 (6)0.771 (3)0.14 (2)*
U11U22U33U12U13U23
O40.0653 (12)0.0295 (9)0.0394 (10)0.0196 (9)0.0133 (9)0.0042 (7)
N10.0348 (11)0.0289 (10)0.0359 (11)0.0043 (8)0.0092 (9)0.0069 (8)
C20.0321 (12)0.0225 (11)0.0299 (12)0.0021 (9)0.0057 (10)−0.0010 (9)
O10.0824 (15)0.0496 (11)0.0354 (10)0.0243 (10)0.0225 (10)0.0014 (9)
O30.0760 (14)0.0357 (10)0.0470 (11)0.0214 (10)0.0261 (10)0.0177 (8)
C40.0365 (13)0.0251 (11)0.0269 (12)0.0028 (9)0.0025 (10)0.0010 (9)
C10.0283 (11)0.0236 (11)0.0275 (11)−0.0002 (9)0.0038 (9)0.0026 (9)
C50.0323 (12)0.0258 (11)0.0313 (12)0.0017 (9)0.0029 (10)−0.0025 (9)
C60.0345 (12)0.0204 (10)0.0348 (12)0.0054 (9)0.0027 (10)0.0003 (9)
O20.0920 (16)0.0371 (11)0.0573 (13)0.0270 (11)0.0282 (12)0.0011 (9)
C30.0317 (12)0.0209 (10)0.0293 (12)0.0016 (9)0.0021 (9)0.0008 (9)
C70.0421 (14)0.0308 (13)0.0343 (13)0.0059 (11)0.0063 (11)−0.0055 (10)
O50.0385 (10)0.0427 (10)0.0604 (12)−0.0026 (8)0.0199 (9)0.0066 (9)
O60.0436 (10)0.0346 (9)0.0562 (12)0.0130 (8)0.0149 (9)0.0030 (8)
O70.0483 (11)0.0269 (9)0.0643 (12)−0.0019 (8)0.0128 (9)0.0126 (8)
N20.0363 (11)0.0263 (10)0.0377 (11)−0.0009 (9)0.0063 (9)−0.0016 (8)
C80.0379 (13)0.0246 (11)0.0290 (12)0.0042 (10)0.0049 (10)−0.0001 (9)
O90.0356 (10)0.0465 (11)0.0460 (11)0.0073 (9)0.0106 (9)−0.0011 (9)
O80.0748 (16)0.0582 (14)0.0742 (17)0.0179 (12)0.0371 (14)0.0138 (12)
O4—C81.279 (3)C4—H4A0.9300
O4—H40.8200C1—C61.371 (3)
N1—C11.464 (3)C5—C61.395 (3)
N1—H1A0.8900C5—C71.496 (3)
N1—H1B0.8900C6—H60.9300
N1—H1C0.8900O2—C71.205 (3)
C2—C11.383 (3)C3—C81.488 (3)
C2—C31.384 (3)O5—N21.249 (2)
C2—H20.9300O6—N21.256 (2)
O1—C71.309 (3)O7—N21.240 (2)
O1—H10.8200O9—H9A0.88 (4)
O3—C81.243 (3)O9—H9B0.84 (5)
C4—C51.392 (3)O8—H8A0.97 (4)
C4—C31.393 (3)O8—H8B0.85 (5)
C8—O4—H4109.5C6—C5—C7118.5 (2)
C1—N1—H1A109.5C1—C6—C5119.2 (2)
C1—N1—H1B109.5C1—C6—H6120.4
H1A—N1—H1B109.5C5—C6—H6120.4
C1—N1—H1C109.5C2—C3—C4120.3 (2)
H1A—N1—H1C109.5C2—C3—C8119.59 (19)
H1B—N1—H1C109.5C4—C3—C8120.1 (2)
C1—C2—C3119.0 (2)O2—C7—O1124.5 (2)
C1—C2—H2120.5O2—C7—C5122.6 (2)
C3—C2—H2120.5O1—C7—C5112.9 (2)
C7—O1—H1109.5O7—N2—O5120.9 (2)
C5—C4—C3119.7 (2)O7—N2—O6119.8 (2)
C5—C4—H4A120.2O5—N2—O6119.32 (19)
C3—C4—H4A120.2O3—C8—O4123.7 (2)
C6—C1—C2121.8 (2)O3—C8—C3120.5 (2)
C6—C1—N1119.39 (19)O4—C8—C3115.8 (2)
C2—C1—N1118.78 (19)H9A—O9—H9B96 (4)
C4—C5—C6119.9 (2)H8A—O8—H8B103 (4)
C4—C5—C7121.6 (2)
D—H···AD—HH···AD···AD—H···A
C2—H2···O6i0.932.583.324 (3)138
O9—H9A···O7ii0.88 (4)2.39 (4)3.048 (3)133 (3)
O9—H9A···O5ii0.88 (4)1.94 (4)2.801 (3)168 (4)
O8—H8B···O3iii0.85 (5)2.29 (5)3.057 (3)149 (4)
O8—H8A···O2iv0.97 (4)2.00 (4)2.882 (3)151 (3)
O4—H4···O3v0.821.842.652 (2)169
N1—H1C···O9vi0.891.982.839 (3)163
N1—H1B···O6vii0.892.002.859 (3)161
N1—H1B···O5vii0.892.553.134 (3)124
O9—H9B···O80.84 (5)1.96 (5)2.796 (3)171 (5)
N1—H1A···O7i0.892.462.933 (3)114
N1—H1A···O6i0.892.092.963 (3)165
O1—H1···O9viii0.821.802.611 (3)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O6i0.932.583.324 (3)138
O9—H9A⋯O7ii0.88 (4)2.39 (4)3.048 (3)133 (3)
O9—H9A⋯O5ii0.88 (4)1.94 (4)2.801 (3)168 (4)
O8—H8B⋯O3iii0.85 (5)2.29 (5)3.057 (3)149 (4)
O8—H8A⋯O2iv0.97 (4)2.00 (4)2.882 (3)151 (3)
O4—H4⋯O3v0.821.842.652 (2)169
N1—H1C⋯O9vi0.891.982.839 (3)163
N1—H1B⋯O6vii0.892.002.859 (3)161
N1—H1B⋯O5vii0.892.553.134 (3)124
O9—H9B⋯O80.84 (5)1.96 (5)2.796 (3)171 (5)
N1—H1A⋯O7i0.892.462.933 (3)114
N1—H1A⋯O6i0.892.092.963 (3)165
O1—H1⋯O9viii0.821.802.611 (3)169

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .

  3 in total

1.  Poly[[copper(II)-di-mu-5-aminoisophthalato(1-)-kappa4N:O] monohydrate].

Authors:  Qiu-Xia Liao; Zhao-Ji Li; Jian Zhang; Yao Kang; Yu-Mei Dai; Yuan-Gen Yao
Journal:  Acta Crystallogr C       Date:  2004-09-25       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  5-aminoisophthalic acid hemihydrate.

Authors:  A J Dobson; R E Gerkin
Journal:  Acta Crystallogr C       Date:  1998-10-15       Impact factor: 1.172

  3 in total

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