Literature DB >> 21580412

2-Amino-5-bromo-pyridinium 3-amino-benzoate.

Madhukar Hemamalini1, Hoong-Kun Fun.   

Abstract

In the title salt, C(5)H(6)BrN(2) (+)·C(7)H(6)NO(2) (-), the pyridine N atom of the 2-amino-5-bromo-pyridine mol-ecule is protonated. In the crystal, the protonated N atom and the 2-amino group are hydrogen-bonded to the carboxyl-ate O atoms via a pair of N-H⋯O hydrogen bonds, forming an R(2) (2)(8) ring motif. Two inversion-related 3-amino-benzoate anions are linked through N-H⋯O hydrogen-bonds, forming an R(2) (2)(14) ring motif. The crystal structure is further stabilized by π⋯π inter-actions involving the benzene and pyridinium rings with a centroid-centroid distance of 3.7743 (15) Å.

Entities:  

Year:  2010        PMID: 21580412      PMCID: PMC2983620          DOI: 10.1107/S1600536810006288

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the chemistry of substituted pyridines, see: Pozharski et al. (1997 ▶); Katritzky et al. (1996 ▶). Balasubramani & Fun (2009 ▶). For related structures, see: Goubitz et al. (2001 ▶); Vaday & Foxman (1999 ▶). For details of 3-amino­benzoic acid, see: Windholz (1976 ▶); Voogd et al. (1980 ▶). For details of hydrogen bonding, see: Jeffrey & Saenger (1991 ▶); Jeffrey (1997 ▶); Scheiner (1997 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C5H6BrN2C7H6NO2 M = 309.15 Monoclinic, a = 10.1650 (7) Å b = 11.0431 (7) Å c = 11.9550 (9) Å β = 113.710 (2)° V = 1228.71 (15) Å3 Z = 4 Mo Kα radiation μ = 3.34 mm−1 T = 296 K 0.42 × 0.39 × 0.11 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.332, T max = 0.708 15251 measured reflections 3565 independent reflections 2650 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.137 S = 1.06 3565 reflections 163 parameters H-atom parameters constrained Δρmax = 0.51 e Å−3 Δρmin = −0.54 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810006288/tk2628sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810006288/tk2628Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H6BrN2+·C7H6NO2F(000) = 620
Mr = 309.15Dx = 1.671 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4215 reflections
a = 10.1650 (7) Åθ = 2.6–26.8°
b = 11.0431 (7) ŵ = 3.34 mm1
c = 11.9550 (9) ÅT = 296 K
β = 113.710 (2)°Blcok, brown
V = 1228.71 (15) Å30.42 × 0.39 × 0.11 mm
Z = 4
Bruker APEX DUO CCD area-detector diffractometer3565 independent reflections
Radiation source: fine-focus sealed tube2650 reflections with I > 2σ(I)
graphiteRint = 0.034
φ and ω scansθmax = 30.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −14→14
Tmin = 0.332, Tmax = 0.708k = −15→14
15251 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.137H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0846P)2 + 0.125P] where P = (Fo2 + 2Fc2)/3
3565 reflections(Δ/σ)max = 0.001
163 parametersΔρmax = 0.51 e Å3
0 restraintsΔρmin = −0.54 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.82844 (3)0.52926 (3)0.04268 (3)0.05749 (15)
N10.5198 (2)0.30649 (19)0.06832 (17)0.0383 (4)
N20.4208 (3)0.2756 (2)0.2082 (2)0.0499 (5)
H2A0.37150.21680.16380.060*
H2B0.41250.29400.27490.060*
C10.5087 (2)0.3373 (2)0.1739 (2)0.0378 (5)
C20.5959 (3)0.4328 (3)0.2429 (2)0.0442 (5)
H20.58970.45690.31510.053*
C30.6892 (3)0.4899 (2)0.2043 (3)0.0448 (5)
H30.74690.55250.25020.054*
C40.6971 (2)0.4537 (2)0.0954 (2)0.0387 (5)
C50.6125 (2)0.3619 (2)0.0294 (2)0.0387 (5)
H50.61830.3370−0.04280.046*
O10.3733 (2)1.13481 (18)0.91776 (17)0.0528 (5)
O20.2423 (2)1.11501 (19)1.02651 (17)0.0549 (5)
N3−0.0679 (3)0.7483 (2)0.8606 (3)0.0677 (7)
H3A−0.11180.68650.81820.081*
H3B−0.09010.77460.91850.081*
C60.2439 (3)0.9284 (2)0.7774 (2)0.0426 (5)
H60.31150.96930.75760.051*
C70.1775 (3)0.8250 (3)0.7134 (2)0.0477 (6)
H70.20120.79630.65080.057*
C80.0755 (3)0.7644 (2)0.7426 (2)0.0461 (6)
H80.03150.69540.69920.055*
C90.0388 (3)0.8058 (2)0.8355 (2)0.0445 (5)
C100.1058 (3)0.9094 (2)0.9004 (2)0.0412 (5)
H100.08200.93800.96300.049*
C110.2085 (3)0.9701 (2)0.8712 (2)0.0375 (5)
C120.2807 (3)1.0815 (2)0.9441 (2)0.0399 (5)
H10.46170.24390.01290.048*
U11U22U33U12U13U23
Br10.0532 (2)0.0605 (2)0.0637 (2)−0.01495 (12)0.02867 (15)−0.00314 (12)
N10.0453 (10)0.0357 (10)0.0354 (9)−0.0041 (8)0.0179 (8)−0.0056 (8)
N20.0630 (14)0.0513 (13)0.0451 (11)−0.0075 (10)0.0320 (10)−0.0064 (10)
C10.0432 (11)0.0364 (12)0.0346 (10)0.0035 (9)0.0165 (8)−0.0018 (9)
C20.0519 (13)0.0432 (13)0.0391 (12)0.0008 (11)0.0200 (10)−0.0102 (10)
C30.0454 (13)0.0388 (12)0.0480 (13)−0.0018 (10)0.0167 (10)−0.0113 (10)
C40.0357 (11)0.0374 (12)0.0438 (12)−0.0006 (8)0.0168 (9)−0.0014 (9)
C50.0427 (11)0.0401 (13)0.0356 (11)−0.0004 (9)0.0183 (9)−0.0031 (9)
O10.0679 (12)0.0533 (12)0.0469 (10)−0.0214 (9)0.0332 (9)−0.0119 (8)
O20.0784 (13)0.0500 (11)0.0479 (10)−0.0120 (9)0.0376 (10)−0.0104 (8)
N30.0686 (16)0.0571 (16)0.094 (2)−0.0195 (13)0.0496 (15)−0.0166 (15)
C60.0455 (12)0.0433 (13)0.0412 (12)−0.0013 (10)0.0196 (9)−0.0006 (10)
C70.0490 (13)0.0480 (15)0.0467 (13)0.0038 (11)0.0198 (10)−0.0063 (11)
C80.0443 (13)0.0380 (13)0.0508 (14)0.0026 (10)0.0137 (10)−0.0052 (11)
C90.0384 (11)0.0407 (13)0.0546 (14)0.0005 (9)0.0191 (10)0.0024 (11)
C100.0430 (12)0.0389 (13)0.0457 (12)0.0005 (9)0.0221 (10)0.0008 (10)
C110.0422 (11)0.0334 (12)0.0353 (11)0.0024 (8)0.0139 (9)0.0034 (9)
C120.0493 (13)0.0365 (12)0.0336 (10)−0.0017 (9)0.0163 (9)0.0021 (9)
Br1—C41.885 (2)O2—C121.252 (3)
N1—C51.353 (3)N3—C91.390 (3)
N1—C11.355 (3)N3—H3A0.8600
N1—H10.9745N3—H3B0.8600
N2—C11.313 (3)C6—C111.387 (3)
N2—H2A0.8600C6—C71.389 (4)
N2—H2B0.8600C6—H60.9300
C1—C21.410 (4)C7—C81.391 (4)
C2—C31.365 (4)C7—H70.9300
C2—H20.9300C8—C91.384 (4)
C3—C41.395 (4)C8—H80.9300
C3—H30.9300C9—C101.396 (4)
C4—C51.358 (3)C10—C111.398 (3)
C5—H50.9300C10—H100.9300
O1—C121.254 (3)C11—C121.515 (3)
C5—N1—C1122.5 (2)H3A—N3—H3B120.0
C5—N1—H1113.7C11—C6—C7119.5 (2)
C1—N1—H1123.8C11—C6—H6120.3
C1—N2—H2A120.0C7—C6—H6120.3
C1—N2—H2B120.0C6—C7—C8120.2 (2)
H2A—N2—H2B120.0C6—C7—H7119.9
N2—C1—N1118.8 (2)C8—C7—H7119.9
N2—C1—C2123.5 (2)C9—C8—C7120.8 (2)
N1—C1—C2117.7 (2)C9—C8—H8119.6
C3—C2—C1120.4 (2)C7—C8—H8119.6
C3—C2—H2119.8C8—C9—N3120.6 (2)
C1—C2—H2119.8C8—C9—C10119.2 (2)
C2—C3—C4119.5 (2)N3—C9—C10120.2 (2)
C2—C3—H3120.3C9—C10—C11120.1 (2)
C4—C3—H3120.3C9—C10—H10120.0
C5—C4—C3119.7 (2)C11—C10—H10120.0
C5—C4—Br1120.33 (18)C6—C11—C10120.3 (2)
C3—C4—Br1119.97 (19)C6—C11—C12120.8 (2)
N1—C5—C4120.3 (2)C10—C11—C12118.9 (2)
N1—C5—H5119.9O2—C12—O1124.2 (2)
C4—C5—H5119.9O2—C12—C11117.4 (2)
C9—N3—H3A120.0O1—C12—C11118.4 (2)
C9—N3—H3B120.0
C5—N1—C1—N2−177.0 (2)C7—C8—C9—N3176.9 (3)
C5—N1—C1—C21.5 (3)C7—C8—C9—C10−0.2 (4)
N2—C1—C2—C3177.4 (3)C8—C9—C10—C110.0 (4)
N1—C1—C2—C3−1.0 (4)N3—C9—C10—C11−177.1 (3)
C1—C2—C3—C40.4 (4)C7—C6—C11—C10−0.7 (4)
C2—C3—C4—C5−0.2 (4)C7—C6—C11—C12179.1 (2)
C2—C3—C4—Br1−178.6 (2)C9—C10—C11—C60.4 (4)
C1—N1—C5—C4−1.3 (4)C9—C10—C11—C12−179.3 (2)
C3—C4—C5—N10.7 (4)C6—C11—C12—O2179.1 (2)
Br1—C4—C5—N1178.99 (18)C10—C11—C12—O2−1.2 (3)
C11—C6—C7—C80.5 (4)C6—C11—C12—O1−0.2 (4)
C6—C7—C8—C9−0.1 (4)C10—C11—C12—O1179.5 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.981.652.626 (3)176
N2—H2A···O2i0.861.992.826 (3)165
N2—H2B···O1ii0.862.062.909 (3)170
N3—H3B···O2iii0.862.263.028 (4)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.981.652.626 (3)176
N2—H2A⋯O2i0.861.992.826 (3)165
N2—H2B⋯O1ii0.862.062.909 (3)170
N3—H3B⋯O2iii0.862.263.028 (4)148

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2,3-Diamino-pyridinium 3-amino-benzoate.

Authors:  Kasthuri Balasubramani; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-01

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  1 in total

1.  2-Amino-5-bromo-pyridine-4-hy-droxy-benzoic acid (1/1).

Authors:  Ching Kheng Quah; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.