Literature DB >> 21580408

1-[5-Acetyl-4-(4-bromo-phen-yl)-2,6-dimethyl-1,4-dihydro-pyridin-3-yl]ethanone monohydrate.

Palakshi B Reddy, V Vijayakumar, S Sarveswari, T Narasimhamurthy, Edward R T Tiekink.   

Abstract

The 1,4-dihydro-pyridine ring in the title hydrate, C(17)H(18)BrNO(2)·H(2)O, has a flattened-boat conformation, and the benzene ring is occupies a position orthogonal to this [dihedral angle: 82.19 (16)°]. In the crystal packing, supra-molecular arrays mediated by N-H⋯O(water) and O(water)-H⋯O(carbon-yl) hydrogen bonding are formed in the bc plane. A highly disordered solvent mol-ecule is present within a mol-ecular cavity defined by the organic and water mol-ecules. Its contribution to the electron density was removed from the observed data in the final cycles of refinement and the formula, mol-ecular weight and density are given without taking into account the contribution of the solvent mol-ecule.

Entities:  

Year:  2010        PMID: 21580408      PMCID: PMC2983612          DOI: 10.1107/S1600536810006124

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the pharmacological potential of Hantzsch 4-dihydro­pyridines, see: Gaudio et al. (1994 ▶); Böcker & Guengerich (1986 ▶); Gordeev et al. (1996 ▶); Sunkel et al. (1992 ▶); Vo et al. (1995 ▶); Cooper et al. (1992 ▶). For the synthesis, see: Rathore et al. (2009 ▶). For a related structure, see: de Armas et al. (2000 ▶). For additional geometric analysis, see: Cremer & Pople, (1975 ▶).

Experimental

Crystal data

C17H18BrNO2·H2O M = 366.25 Monoclinic, a = 13.5236 (3) Å b = 10.3866 (2) Å c = 15.0939 (3) Å β = 102.112 (1)° V = 2072.96 (7) Å3 Z = 4 Mo Kα radiation μ = 1.99 mm−1 T = 293 K 0.21 × 0.11 × 0.10 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.768, T max = 0.819 27847 measured reflections 3658 independent reflections 2611 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.147 S = 1.08 3658 reflections 212 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.56 e Å−3 Δρmin = −0.75 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks general, I. DOI: 10.1107/S1600536810006124/hg2647sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810006124/hg2647Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H18BrNO2·H2OF(000) = 752
Mr = 366.25Dx = 1.174 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7408 reflections
a = 13.5236 (3) Åθ = 2.4–22.7°
b = 10.3866 (2) ŵ = 1.99 mm1
c = 15.0939 (3) ÅT = 293 K
β = 102.112 (1)°Block, colourless
V = 2072.96 (7) Å30.21 × 0.11 × 0.10 mm
Z = 4
Bruker SMART APEX CCD diffractometer3658 independent reflections
Radiation source: fine-focus sealed tube2611 reflections with I > 2σ(I)
graphiteRint = 0.032
ω scansθmax = 25.0°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −16→15
Tmin = 0.768, Tmax = 0.819k = 0→12
27847 measured reflectionsl = 0→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.147H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.071P)2 + 1.0899P] where P = (Fo2 + 2Fc2)/3
3658 reflections(Δ/σ)max = 0.001
212 parametersΔρmax = 0.56 e Å3
4 restraintsΔρmin = −0.75 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br−0.15936 (3)0.08244 (7)0.77808 (4)0.1238 (3)
O10.3468 (2)0.35143 (19)0.87926 (13)0.0640 (6)
O20.3961 (2)−0.2324 (2)0.88848 (14)0.0691 (7)
N10.35579 (19)0.0281 (2)1.09364 (14)0.0423 (5)
H1N0.367 (2)0.001 (3)1.1502 (7)0.051*
C10.3493 (2)0.1585 (2)1.07651 (16)0.0388 (6)
C20.33562 (19)0.1993 (2)0.98949 (16)0.0350 (6)
C30.3071 (2)0.1007 (2)0.91317 (16)0.0356 (6)
H30.33580.13030.86230.043*
C40.3524 (2)−0.0305 (2)0.94161 (16)0.0365 (6)
C50.3691 (2)−0.0629 (2)1.03099 (17)0.0389 (6)
C60.3600 (3)0.2362 (3)1.16203 (18)0.0559 (8)
H6A0.42530.27681.17520.084*
H6B0.35350.18051.21130.084*
H6C0.30820.30081.15420.084*
C70.3489 (2)0.3316 (2)0.96005 (17)0.0425 (6)
C80.3688 (3)0.4445 (3)1.0225 (2)0.0683 (10)
H8A0.37820.52010.98860.102*
H8B0.42870.42891.06810.102*
H8C0.31230.45701.05080.102*
C90.3687 (2)−0.1214 (3)0.87207 (19)0.0463 (7)
C100.3516 (3)−0.0759 (3)0.7756 (2)0.0723 (11)
H10A0.3597−0.14690.73700.108*
H10B0.3997−0.00990.77050.108*
H10C0.2843−0.04200.75770.108*
C110.4025 (3)−0.1911 (3)1.07260 (19)0.0558 (8)
H11A0.3465−0.25001.06120.084*
H11B0.4262−0.18111.13680.084*
H11C0.4561−0.22431.04640.084*
C120.1926 (2)0.0954 (3)0.88046 (17)0.0417 (6)
C130.1332 (2)0.0057 (3)0.9125 (2)0.0638 (9)
H130.1640−0.05420.95530.077*
C140.0291 (3)0.0023 (4)0.8828 (3)0.0778 (11)
H14−0.0092−0.05920.90540.093*
C15−0.0166 (3)0.0895 (4)0.8205 (3)0.0766 (10)
C160.0384 (3)0.1807 (4)0.7877 (3)0.0858 (12)
H160.00630.24060.74560.103*
C170.1432 (3)0.1839 (4)0.8176 (2)0.0686 (9)
H170.18050.24650.79510.082*
O1W0.40559 (17)−0.05147 (18)1.28219 (12)0.0510 (5)
H1w0.392 (3)0.0100 (17)1.3139 (18)0.076*
H2w0.397 (3)−0.1227 (12)1.3060 (19)0.076*
U11U22U33U12U13U23
Br0.0512 (3)0.1686 (6)0.1423 (5)−0.0066 (3)−0.0009 (3)0.0017 (4)
O10.1159 (19)0.0375 (11)0.0411 (11)−0.0092 (11)0.0222 (11)0.0047 (9)
O20.117 (2)0.0393 (12)0.0529 (12)0.0149 (12)0.0218 (12)−0.0105 (10)
N10.0692 (15)0.0318 (12)0.0288 (11)0.0016 (11)0.0171 (11)0.0033 (9)
C10.0527 (16)0.0324 (14)0.0334 (13)−0.0002 (12)0.0141 (11)−0.0015 (11)
C20.0460 (14)0.0276 (13)0.0329 (13)0.0004 (11)0.0114 (11)−0.0029 (10)
C30.0488 (15)0.0305 (13)0.0289 (12)−0.0032 (11)0.0115 (11)−0.0018 (10)
C40.0500 (15)0.0261 (13)0.0345 (13)−0.0033 (11)0.0112 (11)−0.0032 (10)
C50.0489 (15)0.0315 (14)0.0384 (14)−0.0017 (11)0.0139 (12)−0.0024 (11)
C60.094 (2)0.0406 (16)0.0359 (15)0.0006 (16)0.0212 (15)−0.0059 (12)
C70.0553 (16)0.0337 (14)0.0383 (15)0.0002 (12)0.0095 (12)−0.0004 (11)
C80.119 (3)0.0339 (16)0.0524 (19)−0.0096 (17)0.019 (2)−0.0023 (14)
C90.0599 (18)0.0373 (16)0.0431 (15)−0.0024 (13)0.0142 (13)−0.0079 (12)
C100.128 (4)0.053 (2)0.0389 (17)0.0131 (19)0.026 (2)−0.0095 (14)
C110.089 (2)0.0354 (15)0.0454 (16)0.0085 (15)0.0189 (16)0.0056 (12)
C120.0522 (16)0.0400 (14)0.0342 (13)−0.0012 (13)0.0123 (12)−0.0037 (11)
C130.057 (2)0.064 (2)0.069 (2)−0.0095 (16)0.0116 (16)0.0129 (17)
C140.061 (2)0.088 (3)0.087 (3)−0.019 (2)0.020 (2)0.005 (2)
C150.0472 (19)0.097 (3)0.082 (3)−0.005 (2)0.0069 (18)−0.005 (2)
C160.061 (2)0.093 (3)0.093 (3)0.011 (2)−0.005 (2)0.028 (2)
C170.059 (2)0.076 (2)0.067 (2)−0.0011 (18)0.0042 (16)0.0236 (18)
O1w0.0796 (15)0.0376 (10)0.0379 (11)0.0059 (10)0.0170 (10)0.0048 (8)
Br—C151.904 (4)C8—H8B0.9600
O1—C71.231 (3)C8—H8C0.9600
O2—C91.221 (3)C9—C101.501 (4)
N1—C51.375 (3)C10—H10A0.9600
N1—C11.378 (3)C10—H10B0.9600
N1—H1n0.881 (14)C10—H10C0.9600
C1—C21.355 (3)C11—H11A0.9600
C1—C61.503 (4)C11—H11B0.9600
C2—C71.467 (4)C11—H11C0.9600
C2—C31.530 (3)C12—C131.383 (4)
C3—C41.519 (3)C12—C171.388 (4)
C3—C121.523 (4)C13—C141.385 (5)
C3—H30.9800C13—H130.9300
C4—C51.363 (4)C14—C151.358 (6)
C4—C91.462 (4)C14—H140.9300
C5—C111.501 (4)C15—C161.360 (6)
C6—H6A0.9600C16—C171.394 (5)
C6—H6B0.9600C16—H160.9300
C6—H6C0.9600C17—H170.9300
C7—C81.492 (4)O1w—H1w0.84 (2)
C8—H8A0.9600O1w—H2w0.841 (18)
C5—N1—C1124.0 (2)H8B—C8—H8C109.5
C5—N1—H1N115 (2)O2—C9—C4123.3 (3)
C1—N1—H1N119 (2)O2—C9—C10118.2 (2)
C2—C1—N1118.7 (2)C4—C9—C10118.5 (2)
C2—C1—C6129.3 (2)C9—C10—H10A109.5
N1—C1—C6112.0 (2)C9—C10—H10B109.5
C1—C2—C7125.9 (2)H10A—C10—H10B109.5
C1—C2—C3118.8 (2)C9—C10—H10C109.5
C7—C2—C3115.3 (2)H10A—C10—H10C109.5
C4—C3—C12112.4 (2)H10B—C10—H10C109.5
C4—C3—C2111.4 (2)C5—C11—H11A109.5
C12—C3—C2110.3 (2)C5—C11—H11B109.5
C4—C3—H3107.5H11A—C11—H11B109.5
C12—C3—H3107.5C5—C11—H11C109.5
C2—C3—H3107.5H11A—C11—H11C109.5
C5—C4—C9122.2 (2)H11B—C11—H11C109.5
C5—C4—C3118.3 (2)C13—C12—C17116.9 (3)
C9—C4—C3119.3 (2)C13—C12—C3122.5 (3)
C4—C5—N1119.5 (2)C17—C12—C3120.6 (3)
C4—C5—C11127.3 (2)C12—C13—C14122.0 (3)
N1—C5—C11113.2 (2)C12—C13—H13119.0
C1—C6—H6A109.5C14—C13—H13119.0
C1—C6—H6B109.5C15—C14—C13119.4 (3)
H6A—C6—H6B109.5C15—C14—H14120.3
C1—C6—H6C109.5C13—C14—H14120.3
H6A—C6—H6C109.5C14—C15—C16120.8 (3)
H6B—C6—H6C109.5C14—C15—Br119.3 (3)
O1—C7—C2118.6 (2)C16—C15—Br119.9 (3)
O1—C7—C8117.2 (2)C15—C16—C17119.7 (4)
C2—C7—C8124.2 (2)C15—C16—H16120.1
C7—C8—H8A109.5C17—C16—H16120.1
C7—C8—H8B109.5C12—C17—C16121.1 (3)
H8A—C8—H8B109.5C12—C17—H17119.5
C7—C8—H8C109.5C16—C17—H17119.5
H8A—C8—H8C109.5H1w—O1w—H2w111 (3)
C5—N1—C1—C213.2 (4)C3—C2—C7—O1−7.3 (4)
C5—N1—C1—C6−166.2 (3)C1—C2—C7—C8−7.1 (5)
N1—C1—C2—C7−165.8 (3)C3—C2—C7—C8175.0 (3)
C6—C1—C2—C713.5 (5)C5—C4—C9—O21.6 (5)
N1—C1—C2—C312.1 (4)C3—C4—C9—O2−173.2 (3)
C6—C1—C2—C3−168.6 (3)C5—C4—C9—C10−178.1 (3)
C1—C2—C3—C4−31.5 (3)C3—C4—C9—C107.2 (4)
C7—C2—C3—C4146.5 (2)C4—C3—C12—C1329.6 (3)
C1—C2—C3—C1294.1 (3)C2—C3—C12—C13−95.5 (3)
C7—C2—C3—C12−87.9 (3)C4—C3—C12—C17−151.8 (3)
C12—C3—C4—C5−95.4 (3)C2—C3—C12—C1783.1 (3)
C2—C3—C4—C529.0 (3)C17—C12—C13—C140.9 (5)
C12—C3—C4—C979.5 (3)C3—C12—C13—C14179.5 (3)
C2—C3—C4—C9−156.1 (2)C12—C13—C14—C15−0.1 (6)
C9—C4—C5—N1177.7 (3)C13—C14—C15—C16−0.7 (6)
C3—C4—C5—N1−7.5 (4)C13—C14—C15—Br178.7 (3)
C9—C4—C5—C11−1.8 (5)C14—C15—C16—C170.7 (7)
C3—C4—C5—C11173.0 (3)Br—C15—C16—C17−178.7 (3)
C1—N1—C5—C4−15.7 (4)C13—C12—C17—C16−0.8 (5)
C1—N1—C5—C11163.9 (3)C3—C12—C17—C16−179.5 (3)
C1—C2—C7—O1170.6 (3)C15—C16—C17—C120.0 (6)
D—H···AD—HH···AD···AD—H···A
N1—H1n···O1w0.881 (14)2.025 (13)2.904 (3)174 (2)
O1W—H1w···O1i0.84 (2)1.92 (3)2.754 (3)174 (4)
O1W—H2w···O2ii0.84 (2)1.96 (2)2.778 (3)166 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1n⋯O1w0.88 (1)2.03 (1)2.904 (3)174 (2)
O1W—H1w⋯O1i0.84 (2)1.92 (3)2.754 (3)174 (4)
O1W—H2w⋯O2ii0.84 (2)1.96 (2)2.778 (3)166 (2)

Symmetry codes: (i) ; (ii) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Quantitative structure-activity relationships for 1,4-dihydropyridine calcium channel antagonists (nifedipine analogues): a quantum chemical/classical approach.

Authors:  A C Gaudio; A Korolkovas; Y Takahata
Journal:  J Pharm Sci       Date:  1994-08       Impact factor: 3.534

3.  Syntheses, calcium channel agonist-antagonist modulation activities, and voltage-clamp studies of isopropyl 1,4-dihydro-2,6-dimethyl-3-nitro-4-pyridinylpyridine-5-carboxylate racemates and enantiomers.

Authors:  D Vo; W C Matowe; M Ramesh; N Iqbal; M W Wolowyk; S E Howlett; E E Knaus
Journal:  J Med Chem       Date:  1995-07-21       Impact factor: 7.446

4.  Oxidation of 4-aryl- and 4-alkyl-substituted 2,6-dimethyl-3,5-bis(alkoxycarbonyl)-1,4-dihydropyridines by human liver microsomes and immunochemical evidence for the involvement of a form of cytochrome P-450.

Authors:  R H Böcker; F P Guengerich
Journal:  J Med Chem       Date:  1986-09       Impact factor: 7.446

5.  Synthesis of 3-[(2,3-dihydro-1,1,3-trioxo-1,2-benzisothiazol-2-yl)alkyl] 1,4-dihydropyridine-3,5-dicarboxylate derivatives as calcium channel modulators.

Authors:  C E Sunkel; M Fau de Casa-Juana; L Santos; A G García; C R Artalejo; M Villarroya; M A González-Morales; M G López; J Cillero; S Alonso
Journal:  J Med Chem       Date:  1992-06-26       Impact factor: 7.446

6.  1,4-Dihydropyridines as antagonists of platelet activating factor. 1. Synthesis and structure-activity relationships of 2-(4-heterocyclyl)phenyl derivatives.

Authors:  K Cooper; M J Fray; M J Parry; K Richardson; J Steele
Journal:  J Med Chem       Date:  1992-08-21       Impact factor: 7.446

7.  Hantzsch 1,4-dihydropyridine esters and analogs: candidates for generating reproducible one-dimensional packing motifs.

Authors:  R S Rathore; B Palakshi Reddy; V Vijayakumar; R Venkat Ragavan; T Narasimhamurthy
Journal:  Acta Crystallogr B       Date:  2009-05-02

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total
  3 in total

1.  Dimethyl 4-(3-hydroxy-phen-yl)-2,6-dimethyl-1,4-dihydro-pyridine-3,5-dicarboxyl-ate.

Authors:  K Rajesh; V Vijayakumar; T Narasimhamurthy; J Suresh; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-31

2.  (2E)-1-(6-Chloro-2-methyl-4-phenyl-quinolin-3-yl)-3-(4-chloro-phen-yl)prop-2-en-1-one.

Authors:  S Sarveswari; V Vijayakumar; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-12

3.  9-(4-Hy-droxy-phen-yl)-3,3,6,6-tetra-methyl-4,5,6,9-tetra-hydro-3H-xanthene-1,8(2H,7H)-dione.

Authors:  Hoong-Kun Fun; Wan-Sin Loh; K Rajesh; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-02
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.