Literature DB >> 21580397

3-(4-Fluoro-phenyl-sulfin-yl)-2,4,6,7-tetra-methyl-1-benzofuran.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(18)H(17)FO(2)S, the 4-fluoro-phenyl ring is almost perpendicular to the benzofuran fragment [88.07 (5)°]. The crystal structure exhibits weak inter-molecular C-H⋯O hydrogen bonds and C-H⋯π inter-actions. The mol-ecules form pseudo-helices along the a axis.

Entities:  

Year:  2010        PMID: 21580397      PMCID: PMC2983659          DOI: 10.1107/S1600536810005702

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar 2-methyl-3-phenyl­sulfinyl-1-benzofuran derivatives, see: Choi et al. (2007 ▶, 2008a ▶,b ▶). For the biological activity of benzofuran compounds, see: Aslam et al. (2006 ▶); Galal et al. (2009 ▶); Khan et al. (2005 ▶). For natural products with benzofuran rings, see: Akgul & Anil (2003 ▶); Soekamto et al. (2003 ▶).

Experimental

Crystal data

C18H17FO2S M = 316.38 Orthorhombic, a = 12.0034 (5) Å b = 19.7455 (7) Å c = 6.4918 (3) Å V = 1538.64 (11) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 169 K 0.18 × 0.17 × 0.16 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.644, T max = 0.746 8107 measured reflections 2280 independent reflections 2175 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.082 S = 1.06 2280 reflections 204 parameters 1 restraint H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.28 e Å−3 Absolute structure: Flack (1983 ▶), 366 Friedel pairs Flack parameter: 0.01 (12) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I. DOI: 10.1107/S1600536810005702/gw2077sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810005702/gw2077Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H17FO2SF(000) = 664
Mr = 316.38Dx = 1.366 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 4518 reflections
a = 12.0034 (5) Åθ = 2.7–27.4°
b = 19.7455 (7) ŵ = 0.23 mm1
c = 6.4918 (3) ÅT = 169 K
V = 1538.64 (11) Å3Block, colourless
Z = 40.18 × 0.17 × 0.16 mm
Bruker SMART APEXII CCD diffractometer2280 independent reflections
Radiation source: Rotating Anode2175 reflections with I > 2σ(I)
Bruker HELIOS graded multilayer opticsRint = 0.024
Detector resolution: 10.0 pixels mm-1θmax = 27.5°, θmin = 2.0°
φ and ω scansh = −13→15
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −25→25
Tmin = 0.644, Tmax = 0.746l = −4→8
8107 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032H-atom parameters constrained
wR(F2) = 0.082w = 1/[σ2(Fo2) + (0.0551P)2 + 0.1527P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2280 reflectionsΔρmax = 0.25 e Å3
204 parametersΔρmin = −0.28 e Å3
1 restraintAbsolute structure: Flack (1983), 366 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.01 (12)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S0.38790 (4)0.25971 (2)0.83129 (12)0.02606 (12)
F0.48409 (13)0.07177 (8)0.1553 (3)0.0599 (5)
O10.66099 (10)0.36300 (7)0.9163 (2)0.0258 (3)
O20.28018 (11)0.29365 (7)0.7817 (3)0.0352 (4)
C10.49909 (14)0.31749 (9)0.8113 (3)0.0235 (4)
C20.52977 (15)0.36899 (9)0.6611 (3)0.0232 (4)
C30.48697 (16)0.39560 (10)0.4772 (3)0.0273 (4)
C40.54918 (17)0.44634 (9)0.3828 (3)0.0307 (4)
H40.52140.46550.25870.037*
C50.65120 (17)0.47098 (9)0.4609 (4)0.0306 (4)
C60.69347 (16)0.44561 (9)0.6454 (4)0.0265 (4)
C70.62992 (15)0.39505 (9)0.7356 (3)0.0241 (4)
C80.57968 (16)0.31611 (9)0.9575 (3)0.0246 (4)
C90.38031 (17)0.37126 (12)0.3799 (3)0.0315 (5)
H9A0.35370.40510.28120.047*
H9B0.32390.36440.48710.047*
H9C0.39390.32840.30810.047*
C100.71324 (19)0.52419 (10)0.3411 (5)0.0419 (5)
H10A0.70750.56780.41260.063*
H10B0.68090.52820.20310.063*
H10C0.79180.51120.32970.063*
C110.80130 (18)0.46820 (11)0.7418 (4)0.0362 (5)
H11A0.86220.43950.69200.054*
H11B0.79590.46430.89200.054*
H11C0.81600.51540.70430.054*
C120.59977 (17)0.27324 (11)1.1404 (4)0.0297 (4)
H12A0.53540.24361.16300.045*
H12B0.61090.30211.26150.045*
H12C0.66640.24551.11790.045*
C130.42124 (15)0.20619 (9)0.6169 (3)0.0248 (4)
C140.33994 (16)0.19268 (9)0.4725 (4)0.0274 (4)
H140.26970.21460.48120.033*
C150.36070 (16)0.14697 (9)0.3142 (4)0.0311 (4)
H150.30590.13750.21270.037*
C160.46320 (18)0.11590 (10)0.3093 (4)0.0370 (5)
C170.54509 (18)0.12796 (11)0.4537 (4)0.0387 (5)
H170.61450.10500.44600.046*
C180.52465 (16)0.17380 (10)0.6092 (4)0.0309 (4)
H180.58000.18320.70970.037*
U11U22U33U12U13U23
S0.0189 (2)0.0315 (2)0.0278 (2)−0.00380 (16)0.0001 (2)0.0014 (2)
F0.0513 (8)0.0624 (9)0.0659 (11)0.0177 (7)−0.0131 (9)−0.0339 (9)
O10.0215 (7)0.0287 (6)0.0273 (7)−0.0043 (5)−0.0026 (6)0.0005 (6)
O20.0195 (7)0.0421 (8)0.0440 (10)0.0022 (6)0.0003 (6)−0.0035 (7)
C10.0197 (8)0.0252 (8)0.0255 (9)−0.0019 (6)0.0007 (8)−0.0010 (8)
C20.0212 (8)0.0233 (8)0.0252 (9)0.0028 (7)0.0013 (7)−0.0002 (8)
C30.0268 (9)0.0274 (9)0.0276 (10)0.0066 (7)−0.0018 (8)−0.0002 (8)
C40.0328 (10)0.0297 (9)0.0294 (11)0.0072 (8)0.0002 (8)0.0044 (8)
C50.0326 (10)0.0221 (8)0.0372 (11)0.0048 (8)0.0075 (10)0.0043 (9)
C60.0257 (9)0.0216 (8)0.0322 (10)0.0009 (7)0.0042 (9)−0.0023 (8)
C70.0223 (9)0.0241 (8)0.0258 (9)0.0019 (6)0.0010 (8)−0.0015 (8)
C80.0211 (9)0.0263 (9)0.0263 (9)−0.0023 (7)0.0005 (8)−0.0026 (7)
C90.0289 (10)0.0375 (10)0.0282 (12)0.0049 (8)−0.0065 (8)0.0007 (8)
C100.0422 (11)0.0345 (10)0.0490 (13)0.0003 (9)0.0082 (13)0.0131 (12)
C110.0327 (11)0.0328 (10)0.0431 (12)−0.0084 (8)0.0013 (10)−0.0025 (10)
C120.0259 (10)0.0351 (10)0.0279 (10)−0.0026 (8)−0.0022 (9)0.0053 (8)
C130.0205 (9)0.0235 (8)0.0303 (9)−0.0031 (7)−0.0028 (8)0.0019 (8)
C140.0212 (9)0.0268 (8)0.0342 (10)−0.0014 (7)−0.0054 (8)0.0023 (8)
C150.0275 (9)0.0294 (9)0.0364 (12)−0.0023 (7)−0.0083 (10)−0.0017 (10)
C160.0374 (11)0.0314 (9)0.0421 (13)0.0042 (8)−0.0050 (11)−0.0079 (10)
C170.0277 (11)0.0358 (11)0.0525 (14)0.0074 (8)−0.0074 (11)−0.0071 (11)
C180.0228 (9)0.0297 (9)0.0403 (11)0.0010 (8)−0.0071 (9)0.0002 (9)
S—O21.4915 (14)C9—H9C0.9800
S—C11.7606 (18)C10—H10A0.9800
S—C131.793 (2)C10—H10B0.9800
F—C161.350 (3)C10—H10C0.9800
O1—C81.372 (2)C11—H11A0.9800
O1—C71.384 (2)C11—H11B0.9800
C1—C81.356 (3)C11—H11C0.9800
C1—C21.456 (3)C12—H12A0.9800
C2—C71.394 (3)C12—H12B0.9800
C2—C31.402 (3)C12—H12C0.9800
C3—C41.392 (3)C13—C141.379 (3)
C3—C91.506 (3)C13—C181.397 (3)
C4—C51.412 (3)C14—C151.390 (3)
C4—H40.9500C14—H140.9500
C5—C61.394 (3)C15—C161.375 (3)
C5—C101.504 (3)C15—H150.9500
C6—C71.386 (3)C16—C171.379 (3)
C6—C111.505 (3)C17—C181.378 (3)
C8—C121.478 (3)C17—H170.9500
C9—H9A0.9800C18—H180.9500
C9—H9B0.9800
O2—S—C1110.49 (9)C5—C10—H10B109.5
O2—S—C13106.91 (10)H10A—C10—H10B109.5
C1—S—C1398.95 (9)C5—C10—H10C109.5
C8—O1—C7106.41 (15)H10A—C10—H10C109.5
C8—C1—C2107.61 (16)H10B—C10—H10C109.5
C8—C1—S118.44 (15)C6—C11—H11A109.5
C2—C1—S133.91 (15)C6—C11—H11B109.5
C7—C2—C3118.25 (18)H11A—C11—H11B109.5
C7—C2—C1104.08 (16)C6—C11—H11C109.5
C3—C2—C1137.67 (18)H11A—C11—H11C109.5
C4—C3—C2116.62 (18)H11B—C11—H11C109.5
C4—C3—C9120.07 (19)C8—C12—H12A109.5
C2—C3—C9123.30 (18)C8—C12—H12B109.5
C3—C4—C5123.73 (19)H12A—C12—H12B109.5
C3—C4—H4118.1C8—C12—H12C109.5
C5—C4—H4118.1H12A—C12—H12C109.5
C6—C5—C4120.03 (18)H12B—C12—H12C109.5
C6—C5—C10121.0 (2)C14—C13—C18121.06 (19)
C4—C5—C10119.0 (2)C14—C13—S118.92 (15)
C7—C6—C5114.95 (18)C18—C13—S119.72 (16)
C7—C6—C11120.7 (2)C13—C14—C15120.07 (18)
C5—C6—C11124.32 (19)C13—C14—H14120.0
O1—C7—C6122.64 (18)C15—C14—H14120.0
O1—C7—C2110.96 (16)C16—C15—C14117.8 (2)
C6—C7—C2126.40 (19)C16—C15—H15121.1
C1—C8—O1110.94 (17)C14—C15—H15121.1
C1—C8—C12133.67 (17)F—C16—C15118.1 (2)
O1—C8—C12115.30 (17)F—C16—C17118.86 (19)
C3—C9—H9A109.5C15—C16—C17123.0 (2)
C3—C9—H9B109.5C18—C17—C16118.98 (19)
H9A—C9—H9B109.5C18—C17—H17120.5
C3—C9—H9C109.5C16—C17—H17120.5
H9A—C9—H9C109.5C17—C18—C13119.01 (19)
H9B—C9—H9C109.5C17—C18—H18120.5
C5—C10—H10A109.5C13—C18—H18120.5
O2—S—C1—C8137.99 (16)C11—C6—C7—C2−179.11 (19)
C13—S—C1—C8−110.10 (17)C3—C2—C7—O1−179.38 (16)
O2—S—C1—C2−44.4 (2)C1—C2—C7—O10.3 (2)
C13—S—C1—C267.5 (2)C3—C2—C7—C6−0.1 (3)
C8—C1—C2—C7−0.4 (2)C1—C2—C7—C6179.60 (18)
S—C1—C2—C7−178.16 (16)C2—C1—C8—O10.3 (2)
C8—C1—C2—C3179.2 (2)S—C1—C8—O1178.51 (13)
S—C1—C2—C31.4 (4)C2—C1—C8—C12−176.0 (2)
C7—C2—C3—C40.3 (3)S—C1—C8—C122.2 (3)
C1—C2—C3—C4−179.3 (2)C7—O1—C8—C1−0.1 (2)
C7—C2—C3—C9179.36 (18)C7—O1—C8—C12176.90 (17)
C1—C2—C3—C9−0.2 (4)O2—S—C13—C14−13.62 (19)
C2—C3—C4—C50.6 (3)C1—S—C13—C14−128.35 (17)
C9—C3—C4—C5−178.50 (19)O2—S—C13—C18172.58 (16)
C3—C4—C5—C6−1.7 (3)C1—S—C13—C1857.85 (18)
C3—C4—C5—C10177.73 (19)C18—C13—C14—C15−1.0 (3)
C4—C5—C6—C71.7 (3)S—C13—C14—C15−174.70 (16)
C10—C5—C6—C7−177.71 (18)C13—C14—C15—C160.7 (3)
C4—C5—C6—C11179.86 (19)C14—C15—C16—F−179.6 (2)
C10—C5—C6—C110.4 (3)C14—C15—C16—C170.2 (4)
C8—O1—C7—C6−179.43 (18)F—C16—C17—C18179.0 (2)
C8—O1—C7—C2−0.12 (19)C15—C16—C17—C18−0.8 (4)
C5—C6—C7—O1178.31 (17)C16—C17—C18—C130.6 (4)
C11—C6—C7—O10.1 (3)C14—C13—C18—C170.3 (3)
C5—C6—C7—C2−0.9 (3)S—C13—C18—C17173.99 (18)
Cg is the centroid of the C13–C18 ring.
D—H···AD—HH···AD···AD—H···A
C15—H15···O1i0.952.593.529 (3)169
C18—H18···O2ii0.952.493.328 (2)147
C11—H11A···Cgii0.982.663.553 (3)152
C12—H12A···Cgiii0.982.783.590 (3)141
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C13–C18 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C15—H15⋯O1i0.952.593.529 (3)169
C18—H18⋯O2ii0.952.493.328 (2)147
C11—H11ACgii0.982.663.553 (3)152
C12—H12ACgiii0.982.783.590 (3)141

Symmetry codes: (i) ; (ii) ; (iii) .

  7 in total

1.  Benzofurans and another constituent from seeds of Styrax officinalis.

Authors:  Yurdanur Yayla Akgul; Huseyin Anil
Journal:  Phytochemistry       Date:  2003-08       Impact factor: 4.072

2.  A new structural alternative in benzo[b]furans for antimicrobial activity.

Authors:  M Wahab Khan; M Jahangir Alam; M A Rashid; R Chowdhury
Journal:  Bioorg Med Chem       Date:  2005-08-15       Impact factor: 3.641

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Artoindonesianins X and Y, two isoprenylated 2-arylbenzofurans, from Artocarpus fretessi (Moraceae).

Authors:  Nunuk H Soekamto; Sjamsul A Achmad; Emilio L Ghisalberti; Euis H Hakim; Yana M Syah
Journal:  Phytochemistry       Date:  2003-10       Impact factor: 4.072

5.  2,5,7-Trimethyl-3-phenyl-sulfinyl-1-benzo-furan.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-05

6.  Synthesis of potent antitumor and antiviral benzofuran derivatives.

Authors:  Shadia A Galal; Amira S Abd El-All; Mohamed M Abdallah; Hoda I El-Diwani
Journal:  Bioorg Med Chem Lett       Date:  2009-03-21       Impact factor: 2.823

7.  2,4,6-Trimethyl-3-phenyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-12
  7 in total
  2 in total

1.  3-(3-Fluoro-phenyl-sulfin-yl)-2,4,6,7-tetra-methyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-07

2.  3-(4-Bromo-phenyl-sulfin-yl)-2,4,6,7-tetra-methyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-21
  2 in total

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