Literature DB >> 21580391

4,4,6-Trimethyl-1-(3-methyl-phen-yl)-3,4-dihydro-pyrimidine-2(1H)-thione.

Aamer Saeed, Rasheed Ahmad Khera, Masood Parvez.   

Abstract

The asymmetric unit of the title compound, C(14)H(18)N(2)S, contains two independent and conformationally similar mol-ecules, which form cyclic dimers via inter-molecular hydrogen bonds of the type N-H⋯S [graph set R(2) (2)(8)]. The structure is iso-morphous with that of one of the polymorphs of 4,4,6-tri-methyl-1-phenyl-3,4-dihydro-pyrimidine-2(1H)-thione [Yam-in et al. (2005 ▶). Acta Cryst. E61, o55-o57].

Entities:  

Year:  2010        PMID: 21580391      PMCID: PMC2983710          DOI: 10.1107/S1600536810004708

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyrimidine-2-thio­nes, see: Alam et al. (2005 ▶); Sriram et al. (2006 ▶); Swamy et al. (2005 ▶). For related structures, see: Yamin et al. (2005 ▶); Ismail et al. (2007 ▶). For graph-set analysis, see Etter et al. (1990 ▶).

Experimental

Crystal data

C14H18N2S M = 246.36 Orthorhombic, a = 10.5904 (3) Å b = 16.9189 (5) Å c = 30.5713 (10) Å V = 5477.7 (3) Å3 Z = 16 Mo Kα radiation μ = 0.22 mm−1 T = 173 K 0.14 × 0.12 × 0.08 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SORTAV; Blessing, 1997 ▶) T min = 0.970, T max = 0.983 19135 measured reflections 4830 independent reflections 3231 reflections with I > 2.0σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.115 S = 1.04 4830 reflections 315 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.23 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: HKL (Otwinowski & Minor, 1997 ▶); data reduction: SCALEPACK (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks Global, I. DOI: 10.1107/S1600536810004708/zs2028sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810004708/zs2028Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H18N2SF(000) = 2112
Mr = 246.36Dx = 1.195 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 8634 reflections
a = 10.5904 (3) Åθ = 1.0–25.3°
b = 16.9189 (5) ŵ = 0.22 mm1
c = 30.5713 (10) ÅT = 173 K
V = 5477.7 (3) Å3Block, colorless
Z = 160.14 × 0.12 × 0.08 mm
Bruker APEXII CCD diffractometer4830 independent reflections
Radiation source: fine-focus sealed tube3231 reflections with I > 2.0σ(I)
graphiteRint = 0.041
φ & ω scansθmax = 25.3°, θmin = 2.3°
Absorption correction: multi-scan (SORTAV; Blessing, 1997)h = −12→12
Tmin = 0.970, Tmax = 0.983k = −20→20
19135 measured reflectionsl = −36→36
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.115H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.038P)2 + 3.05P] where P = (Fo2 + 2Fc2)/3
4830 reflections(Δ/σ)max < 0.001
315 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.85314 (7)0.07897 (4)0.325070 (19)0.03644 (19)
S20.84290 (7)0.24913 (4)0.43316 (2)0.03863 (19)
N10.75860 (19)0.22309 (11)0.32616 (6)0.0343 (5)
H1N0.75790.21640.35470.041*
N20.76802 (18)0.16559 (11)0.25790 (6)0.0305 (5)
N30.7806 (2)0.09853 (11)0.43444 (6)0.0376 (5)
H3N0.78970.10320.40600.045*
N40.7743 (2)0.16054 (12)0.50157 (6)0.0354 (5)
C10.7907 (2)0.16081 (13)0.30203 (7)0.0285 (6)
C20.7240 (2)0.30212 (14)0.30983 (8)0.0327 (6)
C30.6741 (2)0.29264 (14)0.26468 (8)0.0365 (6)
H30.62200.33320.25300.044*
C40.6990 (2)0.23009 (14)0.23982 (8)0.0325 (6)
C50.6260 (3)0.33607 (17)0.34098 (9)0.0513 (8)
H5A0.60520.39020.33210.062*
H5B0.66010.33650.37080.062*
H5C0.54960.30340.34010.062*
C60.8409 (3)0.35435 (16)0.31010 (10)0.0476 (7)
H6A0.81820.40770.30030.057*
H6B0.90450.33210.29030.057*
H6C0.87530.35690.33980.057*
C70.6571 (3)0.22143 (16)0.19344 (8)0.0440 (7)
H7A0.61240.26940.18430.053*
H7B0.60030.17590.19090.053*
H7C0.73090.21330.17460.053*
C80.8098 (2)0.10194 (14)0.23002 (7)0.0293 (6)
C90.7269 (2)0.04236 (14)0.21939 (7)0.0316 (6)
H90.64330.04320.23060.038*
C100.7653 (2)−0.01925 (14)0.19210 (8)0.0346 (6)
C110.8885 (3)−0.01932 (15)0.17714 (8)0.0380 (6)
H110.9167−0.06170.15920.046*
C120.9715 (2)0.04068 (16)0.18757 (8)0.0386 (6)
H121.05540.03970.17660.046*
C130.9320 (2)0.10269 (15)0.21418 (7)0.0339 (6)
H130.98790.14470.22130.041*
C140.6721 (3)−0.08216 (16)0.17965 (9)0.0494 (8)
H14A0.7167−0.12640.16580.059*
H14B0.6104−0.06020.15910.059*
H14C0.6283−0.10090.20590.059*
C150.7974 (2)0.16412 (14)0.45766 (8)0.0325 (6)
C160.7484 (3)0.01867 (14)0.45061 (8)0.0390 (7)
C170.7067 (3)0.02656 (17)0.49684 (9)0.0549 (8)
H170.6667−0.01760.51010.066*
C180.7217 (3)0.09111 (15)0.52074 (8)0.0420 (7)
C190.8654 (3)−0.03424 (16)0.44798 (10)0.0569 (8)
H19A0.8435−0.08780.45760.068*
H19B0.9317−0.01290.46700.068*
H19C0.8959−0.03590.41770.068*
C200.6454 (3)−0.01520 (17)0.42148 (10)0.0532 (8)
H20A0.6238−0.06860.43140.064*
H20B0.6756−0.01740.39120.064*
H20C0.57040.01860.42300.064*
C210.6857 (4)0.09640 (19)0.56755 (10)0.0709 (10)
H21A0.65610.04470.57770.085*
H21B0.61800.13540.57100.085*
H21C0.75910.11270.58490.085*
C220.8055 (2)0.22713 (14)0.52939 (8)0.0331 (6)
C230.7123 (2)0.27825 (15)0.54251 (8)0.0355 (6)
H230.62880.27180.53170.043*
C240.7391 (3)0.33970 (15)0.57156 (8)0.0381 (6)
C250.8616 (3)0.34748 (16)0.58649 (8)0.0425 (7)
H250.88150.38870.60640.051*
C260.9557 (3)0.29648 (17)0.57300 (8)0.0464 (7)
H261.03960.30330.58330.056*
C270.9278 (3)0.23536 (16)0.54441 (8)0.0403 (7)
H270.99180.19970.53530.048*
C280.6363 (3)0.39498 (17)0.58604 (10)0.0541 (8)
H28A0.66590.42600.61110.065*
H28B0.56170.36440.59450.065*
H28C0.61440.43060.56190.065*
U11U22U33U12U13U23
S10.0510 (4)0.0257 (3)0.0326 (3)0.0049 (3)−0.0024 (3)0.0000 (3)
S20.0582 (5)0.0254 (3)0.0322 (3)−0.0035 (3)−0.0002 (3)0.0002 (3)
N10.0497 (13)0.0252 (11)0.0281 (10)0.0039 (10)0.0008 (10)−0.0014 (9)
N20.0352 (12)0.0272 (11)0.0292 (10)0.0041 (10)−0.0024 (10)−0.0019 (9)
N30.0615 (15)0.0240 (11)0.0274 (11)−0.0043 (11)0.0009 (11)−0.0011 (9)
N40.0493 (14)0.0276 (11)0.0291 (11)−0.0034 (11)0.0026 (10)−0.0016 (9)
C10.0295 (13)0.0243 (13)0.0318 (13)−0.0033 (11)0.0000 (11)−0.0012 (10)
C20.0375 (15)0.0245 (13)0.0362 (13)0.0026 (12)−0.0003 (12)−0.0029 (11)
C30.0383 (15)0.0272 (14)0.0439 (15)0.0046 (12)−0.0074 (13)0.0029 (12)
C40.0326 (14)0.0304 (14)0.0345 (14)0.0000 (12)−0.0033 (12)0.0016 (11)
C50.0586 (19)0.0457 (18)0.0495 (16)0.0192 (16)0.0048 (15)−0.0015 (14)
C60.0503 (18)0.0360 (16)0.0564 (17)−0.0044 (14)−0.0067 (15)0.0013 (13)
C70.0522 (18)0.0370 (16)0.0427 (15)0.0072 (14)−0.0087 (14)0.0001 (12)
C80.0337 (15)0.0272 (13)0.0270 (12)0.0039 (12)−0.0030 (11)0.0003 (10)
C90.0310 (14)0.0335 (14)0.0304 (13)0.0018 (12)0.0000 (11)0.0007 (11)
C100.0437 (16)0.0299 (14)0.0300 (13)0.0001 (13)−0.0069 (12)0.0011 (11)
C110.0471 (17)0.0375 (16)0.0293 (13)0.0127 (14)−0.0058 (13)−0.0053 (12)
C120.0360 (15)0.0475 (17)0.0324 (14)0.0066 (14)0.0006 (12)−0.0001 (13)
C130.0338 (15)0.0375 (15)0.0305 (13)−0.0008 (12)−0.0011 (12)−0.0006 (11)
C140.061 (2)0.0392 (16)0.0475 (16)−0.0060 (15)−0.0062 (15)−0.0059 (13)
C150.0375 (15)0.0285 (14)0.0316 (13)0.0011 (12)−0.0027 (11)−0.0003 (11)
C160.0558 (18)0.0235 (14)0.0378 (15)−0.0044 (13)0.0016 (14)0.0008 (11)
C170.083 (2)0.0356 (17)0.0457 (17)−0.0191 (17)0.0134 (16)0.0015 (13)
C180.0555 (18)0.0337 (15)0.0369 (14)−0.0072 (14)0.0043 (14)0.0028 (12)
C190.067 (2)0.0353 (17)0.068 (2)0.0020 (16)−0.0107 (17)0.0072 (15)
C200.060 (2)0.0351 (16)0.0645 (19)−0.0108 (15)−0.0136 (16)0.0014 (14)
C210.114 (3)0.054 (2)0.0451 (17)−0.026 (2)0.0167 (19)0.0044 (15)
C220.0427 (16)0.0287 (14)0.0278 (12)−0.0003 (13)0.0009 (12)−0.0017 (10)
C230.0359 (15)0.0386 (15)0.0319 (13)−0.0014 (13)−0.0031 (12)−0.0013 (12)
C240.0479 (17)0.0339 (15)0.0325 (13)0.0029 (14)0.0026 (13)−0.0058 (12)
C250.0503 (18)0.0429 (17)0.0343 (14)−0.0076 (15)−0.0065 (14)−0.0086 (12)
C260.0418 (17)0.0542 (19)0.0431 (16)−0.0059 (16)−0.0066 (14)0.0004 (14)
C270.0400 (16)0.0384 (16)0.0425 (15)0.0029 (13)0.0002 (13)−0.0008 (12)
C280.0571 (19)0.0471 (18)0.0580 (18)0.0050 (16)0.0054 (16)−0.0155 (15)
S1—C11.688 (2)C11—H110.9500
S2—C151.692 (2)C12—C131.392 (3)
N1—C11.331 (3)C12—H120.9500
N1—C21.473 (3)C13—H130.9500
N1—H1N0.8800C14—H14A0.9800
N2—C11.373 (3)C14—H14B0.9800
N2—C41.425 (3)C14—H14C0.9800
N2—C81.443 (3)C16—C171.487 (4)
N3—C151.329 (3)C16—C201.520 (4)
N3—C161.478 (3)C16—C191.531 (4)
N3—H3N0.8800C17—C181.324 (4)
N4—C151.366 (3)C17—H170.9500
N4—C181.426 (3)C18—C211.484 (4)
N4—C221.450 (3)C19—H19A0.9800
C2—C31.487 (3)C19—H19B0.9800
C2—C51.521 (3)C19—H19C0.9800
C2—C61.521 (3)C20—H20A0.9800
C3—C41.329 (3)C20—H20B0.9800
C3—H30.9500C20—H20C0.9800
C4—C71.493 (3)C21—H21A0.9800
C5—H5A0.9800C21—H21B0.9800
C5—H5B0.9800C21—H21C0.9800
C5—H5C0.9800C22—C231.372 (3)
C6—H6A0.9800C22—C271.381 (3)
C6—H6B0.9800C23—C241.396 (3)
C6—H6C0.9800C23—H230.9500
C7—H7A0.9800C24—C251.382 (4)
C7—H7B0.9800C24—C281.501 (4)
C7—H7C0.9800C25—C261.381 (4)
C8—C91.376 (3)C25—H250.9500
C8—C131.381 (3)C26—C271.386 (4)
C9—C101.396 (3)C26—H260.9500
C9—H90.9500C27—H270.9500
C10—C111.382 (4)C28—H28A0.9800
C10—C141.501 (3)C28—H28B0.9800
C11—C121.380 (3)C28—H28C0.9800
C1—N1—C2126.47 (19)C10—C14—H14A109.5
C1—N1—H1N116.8C10—C14—H14B109.5
C2—N1—H1N116.8H14A—C14—H14B109.5
C1—N2—C4121.07 (19)C10—C14—H14C109.5
C1—N2—C8118.86 (19)H14A—C14—H14C109.5
C4—N2—C8119.99 (18)H14B—C14—H14C109.5
C15—N3—C16128.0 (2)N3—C15—N4117.6 (2)
C15—N3—H3N116.0N3—C15—S2120.77 (18)
C16—N3—H3N116.0N4—C15—S2121.60 (18)
C15—N4—C18120.7 (2)N3—C16—C17107.7 (2)
C15—N4—C22120.1 (2)N3—C16—C20108.3 (2)
C18—N4—C22119.22 (19)C17—C16—C20112.2 (2)
N1—C1—N2117.0 (2)N3—C16—C19109.3 (2)
N1—C1—S1121.21 (17)C17—C16—C19110.0 (2)
N2—C1—S1121.80 (17)C20—C16—C19109.3 (2)
N1—C2—C3107.76 (19)C18—C17—C16124.3 (2)
N1—C2—C5107.5 (2)C18—C17—H17117.9
C3—C2—C5112.3 (2)C16—C17—H17117.9
N1—C2—C6108.8 (2)C17—C18—N4120.0 (2)
C3—C2—C6110.9 (2)C17—C18—C21123.5 (3)
C5—C2—C6109.4 (2)N4—C18—C21116.6 (2)
C4—C3—C2123.1 (2)C16—C19—H19A109.5
C4—C3—H3118.4C16—C19—H19B109.5
C2—C3—H3118.4H19A—C19—H19B109.5
C3—C4—N2119.3 (2)C16—C19—H19C109.5
C3—C4—C7124.2 (2)H19A—C19—H19C109.5
N2—C4—C7116.5 (2)H19B—C19—H19C109.5
C2—C5—H5A109.5C16—C20—H20A109.5
C2—C5—H5B109.5C16—C20—H20B109.5
H5A—C5—H5B109.5H20A—C20—H20B109.5
C2—C5—H5C109.5C16—C20—H20C109.5
H5A—C5—H5C109.5H20A—C20—H20C109.5
H5B—C5—H5C109.5H20B—C20—H20C109.5
C2—C6—H6A109.5C18—C21—H21A109.5
C2—C6—H6B109.5C18—C21—H21B109.5
H6A—C6—H6B109.5H21A—C21—H21B109.5
C2—C6—H6C109.5C18—C21—H21C109.5
H6A—C6—H6C109.5H21A—C21—H21C109.5
H6B—C6—H6C109.5H21B—C21—H21C109.5
C4—C7—H7A109.5C23—C22—C27120.9 (2)
C4—C7—H7B109.5C23—C22—N4119.8 (2)
H7A—C7—H7B109.5C27—C22—N4119.2 (2)
C4—C7—H7C109.5C22—C23—C24120.6 (2)
H7A—C7—H7C109.5C22—C23—H23119.7
H7B—C7—H7C109.5C24—C23—H23119.7
C9—C8—C13121.5 (2)C25—C24—C23118.1 (2)
C9—C8—N2119.4 (2)C25—C24—C28121.6 (2)
C13—C8—N2119.2 (2)C23—C24—C28120.3 (2)
C8—C9—C10120.1 (2)C26—C25—C24121.3 (2)
C8—C9—H9119.9C26—C25—H25119.3
C10—C9—H9119.9C24—C25—H25119.3
C11—C10—C9118.3 (2)C25—C26—C27120.0 (3)
C11—C10—C14122.4 (2)C25—C26—H26120.0
C9—C10—C14119.3 (2)C27—C26—H26120.0
C12—C11—C10121.6 (2)C22—C27—C26119.0 (3)
C12—C11—H11119.2C22—C27—H27120.5
C10—C11—H11119.2C26—C27—H27120.5
C11—C12—C13119.9 (2)C24—C28—H28A109.5
C11—C12—H12120.1C24—C28—H28B109.5
C13—C12—H12120.1H28A—C28—H28B109.5
C8—C13—C12118.7 (2)C24—C28—H28C109.5
C8—C13—H13120.7H28A—C28—H28C109.5
C12—C13—H13120.7H28B—C28—H28C109.5
C2—N1—C1—N2−12.6 (4)C16—N3—C15—N4−5.1 (4)
C2—N1—C1—S1168.88 (18)C16—N3—C15—S2176.2 (2)
C4—N2—C1—N1−7.6 (3)C18—N4—C15—N3−6.2 (4)
C8—N2—C1—N1175.5 (2)C22—N4—C15—N3172.5 (2)
C4—N2—C1—S1170.90 (17)C18—N4—C15—S2172.50 (19)
C8—N2—C1—S1−6.0 (3)C22—N4—C15—S2−8.8 (3)
C1—N1—C2—C325.6 (3)C15—N3—C16—C1713.6 (4)
C1—N1—C2—C5146.8 (2)C15—N3—C16—C20135.1 (3)
C1—N1—C2—C6−94.7 (3)C15—N3—C16—C19−105.9 (3)
N1—C2—C3—C4−21.0 (3)N3—C16—C17—C18−12.5 (4)
C5—C2—C3—C4−139.2 (3)C20—C16—C17—C18−131.6 (3)
C6—C2—C3—C498.0 (3)C19—C16—C17—C18106.6 (3)
C2—C3—C4—N25.3 (4)C16—C17—C18—N43.8 (5)
C2—C3—C4—C7−175.9 (2)C16—C17—C18—C21−176.6 (3)
C1—N2—C4—C311.0 (3)C15—N4—C18—C176.8 (4)
C8—N2—C4—C3−172.1 (2)C22—N4—C18—C17−171.9 (3)
C1—N2—C4—C7−167.8 (2)C15—N4—C18—C21−172.8 (3)
C8—N2—C4—C79.1 (3)C22—N4—C18—C218.5 (4)
C1—N2—C8—C994.8 (3)C15—N4—C22—C23100.7 (3)
C4—N2—C8—C9−82.2 (3)C18—N4—C22—C23−80.6 (3)
C1—N2—C8—C13−85.9 (3)C15—N4—C22—C27−83.1 (3)
C4—N2—C8—C1397.1 (3)C18—N4—C22—C2795.6 (3)
C13—C8—C9—C100.1 (4)C27—C22—C23—C24−0.2 (4)
N2—C8—C9—C10179.3 (2)N4—C22—C23—C24175.8 (2)
C8—C9—C10—C111.4 (3)C22—C23—C24—C250.2 (4)
C8—C9—C10—C14−177.9 (2)C22—C23—C24—C28−179.5 (2)
C9—C10—C11—C12−1.8 (4)C23—C24—C25—C260.4 (4)
C14—C10—C11—C12177.4 (2)C28—C24—C25—C26−179.9 (3)
C10—C11—C12—C130.8 (4)C24—C25—C26—C27−0.9 (4)
C9—C8—C13—C12−1.2 (4)C23—C22—C27—C26−0.2 (4)
N2—C8—C13—C12179.5 (2)N4—C22—C27—C26−176.4 (2)
C11—C12—C13—C80.8 (3)C25—C26—C27—C220.8 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1N···S20.882.623.419 (2)151
N3—H3N···S10.882.603.447 (2)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯S20.882.623.419 (2)151
N3—H3N⋯S10.882.603.447 (2)163
  4 in total

1.  Synthesis, in vitro and in vivo antimycobacterial activities of diclofenac acid hydrazones and amides.

Authors:  Dharmarajan Sriram; Perumal Yogeeswari; Ruth Vandana Devakaram
Journal:  Bioorg Med Chem       Date:  2006-01-18       Impact factor: 3.641

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

4.  Synthesis of pharmaceutically important condensed heterocyclic 4,6-disubstituted-1,2,4-triazolo-1,3,4-thiadiazole derivatives as antimicrobials.

Authors:  S Nanjunda Swamy; B S Priya; B Prabhuswamy; B H Doreswamy; J Shashidhara Prasad; Kanchugarakoppal S Rangappa
Journal:  Eur J Med Chem       Date:  2006-03-10       Impact factor: 6.514

  4 in total
  1 in total

1.  1-(3-Fluoro-phen-yl)-4,4,6-trimethyl-3,4-dihydro-pyrimidine-2(1H)-thione.

Authors:  Bohari M Yamin; Ruhana L Lawi; Halima F Salem
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-25
  1 in total

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