Literature DB >> 21580390

(E)-3-[2,5-Dioxo-3-(propan-2-yl-idene)pyrrolidin-1-yl]acrylic acid.

Fang Miao, Bao-Fu Qin, Li-Zhen Yang, Xin-Juan Yang, Le Zhou.   

Abstract

The title compound, C(10)H(11)NO(4), was extracted from a culture broth of Penicillium verruculosum YL-52. The mol-ecular structure is essentially planar, with an r.m.s. deviation of 0.01342 (2) Å for the non-H atoms. In the crystal structure, adjacent mol-ecules are connected into a centrosymmetric dimer through a pair of O-H⋯O hydrogen bonds. The dimers are further extended into a chain by weak C-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21580390      PMCID: PMC2983691          DOI: 10.1107/S1600536810005040

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Cheng et al. (2009 ▶). For details of Penicillium verruculosum YL-52, see: Yang et al. (2009 ▶).

Experimental

Crystal data

C10H11NO4 M = 209.20 Triclinic, a = 6.5384 (14) Å b = 7.5309 (17) Å c = 10.405 (2) Å α = 93.009 (3)° β = 101.247 (2)° γ = 90.410 (3)° V = 501.74 (19) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.33 × 0.12 × 0.08 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.965, T max = 0.991 3845 measured reflections 1849 independent reflections 1255 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.125 S = 1.05 1849 reflections 139 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810005040/is2521sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810005040/is2521Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H11NO4Z = 2
Mr = 209.20F(000) = 220
Triclinic, P1Dx = 1.385 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.5384 (14) ÅCell parameters from 773 reflections
b = 7.5309 (17) Åθ = 0.00–0.00°
c = 10.405 (2) ŵ = 0.11 mm1
α = 93.009 (3)°T = 296 K
β = 101.247 (2)°Block, colourless
γ = 90.410 (3)°0.33 × 0.12 × 0.08 mm
V = 501.74 (19) Å3
Bruker APEXII CCD diffractometer1849 independent reflections
Radiation source: fine-focus sealed tube1255 reflections with I > 2σ(I)
graphiteRint = 0.024
φ and ω scansθmax = 25.5°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −7→7
Tmin = 0.965, Tmax = 0.991k = −9→9
3845 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0581P)2 + 0.0541P] where P = (Fo2 + 2Fc2)/3
1849 reflections(Δ/σ)max < 0.001
139 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O21.2795 (3)0.5891 (2)0.92347 (15)0.0617 (5)
O11.5542 (3)0.5091 (3)0.83867 (17)0.0664 (5)
H11.59820.48180.91420.100*
N10.9689 (2)0.7432 (2)0.55825 (16)0.0375 (4)
O40.6865 (2)0.8327 (2)0.64451 (17)0.0611 (5)
O31.2017 (2)0.6881 (2)0.42194 (15)0.0555 (5)
C41.0334 (3)0.7417 (3)0.4361 (2)0.0372 (5)
C31.0819 (3)0.6860 (3)0.6763 (2)0.0403 (5)
H31.01430.69040.74720.048*
C50.8620 (3)0.8155 (3)0.3422 (2)0.0382 (5)
C80.8650 (3)0.8428 (3)0.2160 (2)0.0445 (6)
C21.2744 (3)0.6264 (3)0.6983 (2)0.0437 (6)
H21.34910.61840.63090.052*
C11.3693 (3)0.5730 (3)0.8297 (2)0.0441 (6)
C60.6859 (3)0.8529 (3)0.4118 (2)0.0458 (6)
H6A0.64630.97650.40600.055*
H6B0.56540.77820.37430.055*
C70.7675 (3)0.8117 (3)0.5505 (2)0.0433 (5)
C100.6796 (4)0.9171 (3)0.1284 (2)0.0580 (7)
H10A0.57140.93960.17730.087*
H10B0.62940.83310.05630.087*
H10C0.71921.02620.09530.087*
C91.0460 (4)0.8041 (4)0.1519 (3)0.0675 (8)
H9A1.10760.91380.13380.101*
H9B0.99920.73470.07130.101*
H9C1.14760.73880.20930.101*
U11U22U33U12U13U23
O20.0608 (11)0.0854 (13)0.0385 (10)0.0281 (9)0.0066 (8)0.0098 (8)
O10.0544 (11)0.0958 (14)0.0481 (10)0.0294 (10)0.0024 (8)0.0214 (10)
N10.0320 (9)0.0440 (10)0.0355 (10)0.0051 (8)0.0029 (8)0.0055 (8)
O40.0491 (10)0.0836 (12)0.0550 (11)0.0187 (9)0.0177 (9)0.0121 (9)
O30.0375 (9)0.0838 (12)0.0452 (9)0.0178 (8)0.0060 (7)0.0105 (8)
C40.0296 (11)0.0413 (12)0.0396 (12)0.0026 (9)0.0032 (9)0.0046 (9)
C30.0427 (13)0.0417 (12)0.0348 (12)0.0027 (10)0.0024 (10)0.0065 (9)
C50.0328 (11)0.0386 (12)0.0413 (13)0.0022 (9)0.0014 (9)0.0054 (9)
C80.0448 (13)0.0447 (13)0.0414 (13)0.0022 (10)0.0009 (10)0.0051 (10)
C20.0446 (14)0.0478 (13)0.0373 (12)0.0043 (11)0.0027 (10)0.0072 (10)
C10.0426 (13)0.0442 (13)0.0425 (13)0.0081 (10)0.0005 (11)0.0045 (10)
C60.0360 (12)0.0521 (13)0.0480 (14)0.0092 (10)0.0033 (10)0.0093 (11)
C70.0364 (12)0.0478 (13)0.0465 (14)0.0048 (10)0.0094 (11)0.0055 (10)
C100.0571 (16)0.0625 (16)0.0484 (15)0.0082 (12)−0.0073 (12)0.0138 (12)
C90.0633 (17)0.093 (2)0.0487 (15)0.0124 (15)0.0150 (13)0.0130 (14)
O2—C11.234 (3)C8—C91.491 (3)
O1—C11.293 (3)C8—C101.499 (3)
O1—H10.8200C2—C11.465 (3)
N1—C31.395 (3)C2—H20.9300
N1—C71.407 (3)C6—C71.488 (3)
N1—C41.415 (3)C6—H6A0.9700
O4—C71.203 (3)C6—H6B0.9700
O3—C41.207 (2)C10—H10A0.9600
C4—C51.469 (3)C10—H10B0.9600
C3—C21.321 (3)C10—H10C0.9600
C3—H30.9300C9—H9A0.9600
C5—C81.343 (3)C9—H9B0.9600
C5—C61.496 (3)C9—H9C0.9600
C1—O1—H1109.5C7—C6—C5105.09 (17)
C3—N1—C7120.90 (18)C7—C6—H6A110.7
C3—N1—C4127.07 (17)C5—C6—H6A110.7
C7—N1—C4112.03 (17)C7—C6—H6B110.7
O3—C4—N1122.39 (18)C5—C6—H6B110.7
O3—C4—C5130.8 (2)H6A—C6—H6B108.8
N1—C4—C5106.80 (17)O4—C7—N1122.9 (2)
C2—C3—N1127.1 (2)O4—C7—C6129.1 (2)
C2—C3—H3116.5N1—C7—C6107.93 (18)
N1—C3—H3116.5C8—C10—H10A109.5
C8—C5—C4125.4 (2)C8—C10—H10B109.5
C8—C5—C6126.63 (19)H10A—C10—H10B109.5
C4—C5—C6107.97 (18)C8—C10—H10C109.5
C5—C8—C9124.3 (2)H10A—C10—H10C109.5
C5—C8—C10120.9 (2)H10B—C10—H10C109.5
C9—C8—C10114.8 (2)C8—C9—H9A109.5
C3—C2—C1119.5 (2)C8—C9—H9B109.5
C3—C2—H2120.2H9A—C9—H9B109.5
C1—C2—H2120.2C8—C9—H9C109.5
O2—C1—O1123.3 (2)H9A—C9—H9C109.5
O2—C1—C2122.4 (2)H9B—C9—H9C109.5
O1—C1—C2114.3 (2)
C3—N1—C4—O3−0.1 (3)C6—C5—C8—C10−0.4 (3)
C7—N1—C4—O3179.89 (19)N1—C3—C2—C1179.57 (19)
C3—N1—C4—C5−179.71 (17)C3—C2—C1—O2−3.5 (3)
C7—N1—C4—C50.3 (2)C3—C2—C1—O1177.0 (2)
C7—N1—C3—C2−176.9 (2)C8—C5—C6—C7−176.1 (2)
C4—N1—C3—C23.1 (3)C4—C5—C6—C74.3 (2)
O3—C4—C5—C8−2.1 (4)C3—N1—C7—O43.7 (3)
N1—C4—C5—C8177.4 (2)C4—N1—C7—O4−176.4 (2)
O3—C4—C5—C6177.6 (2)C3—N1—C7—C6−177.54 (18)
N1—C4—C5—C6−2.9 (2)C4—N1—C7—C62.4 (2)
C4—C5—C8—C9−0.8 (4)C5—C6—C7—O4174.6 (2)
C6—C5—C8—C9179.6 (2)C5—C6—C7—N1−4.1 (2)
C4—C5—C8—C10179.3 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1···O2i0.821.832.647 (2)174
C6—H6A···O4ii0.972.603.399 (3)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O2i0.821.832.647 (2)174
C6—H6A⋯O4ii0.972.603.399 (3)140

Symmetry codes: (i) ; (ii) .

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