Literature DB >> 21580382

2-Butyl-11-phenyl-5,10-dihydro-1H-benzo[e]imidazo[1,5-a][1,4]diazepine-1,3(2H)-dione.

Gary S Nichol, Steven Gunawan, Justin Dietrich, Christopher Hulme.   

Abstract

The title compound, C(21)H(21)N(3)O(2), was obtained following a five-step synthetic procedure yielding weakly diffracting rod and needle-shaped crystals which crystallized concomitantly. Structural analysis of a rod-shaped crystal showed that the central seven-membered heterocyclic ring adopts a conformation that is perhaps best described as a distorted boat, with the H-bearing (CH(2) and NH) atoms lying well out of the least-squares mean plane fitted through the other five atoms in the ring (r.m.s. deviation 0.075 Å). In the crystal, the compound packs as a twisted chain, which propagates along the b axis by means of an R(1) (2)(6) motif formed by one of the carbonyl O atoms acting as a bifurcated acceptor in an N-H⋯O and C-H⋯O inter-action. No diffraction was observed from the needle-shaped crystals.

Entities:  

Year:  2010        PMID: 21580382      PMCID: PMC2983587          DOI: 10.1107/S1600536810005477

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the synthetic procedure, see: Hulme & Gore (2003 ▶); Hulme et al. (2000 ▶). For graph-set analysis of hydrogen-bond networks, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C21H21N3O2 M = 347.41 Monoclinic, a = 12.192 (4) Å b = 7.638 (2) Å c = 18.514 (6) Å β = 95.494 (5)° V = 1716.1 (9) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.29 × 0.14 × 0.08 mm

Data collection

Bruker Kappa APEXII DUO CCD diffractometer Absorption correction: numerical (SADABS; Sheldrick, 1996 ▶) T min = 0.975, T max = 0.993 14047 measured reflections 2724 independent reflections 1908 reflections with I > 2σ(I) R int = 0.067 θmax = 24.1°

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.181 S = 1.03 2724 reflections 239 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.71 e Å−3 Δρmin = −0.29 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXTL and local programs. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810005477/bh2272sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810005477/bh2272Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H21N3O2F(000) = 736
Mr = 347.41Dx = 1.345 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2525 reflections
a = 12.192 (4) Åθ = 2.2–24.8°
b = 7.638 (2) ŵ = 0.09 mm1
c = 18.514 (6) ÅT = 100 K
β = 95.494 (5)°Rod, yellow
V = 1716.1 (9) Å30.29 × 0.14 × 0.08 mm
Z = 4
Bruker Kappa APEXII DUO CCD diffractometer2724 independent reflections
Radiation source: fine-focus sealed tube with Miracol optics1908 reflections with I > 2σ(I)
graphiteRint = 0.067
φ and ω scansθmax = 24.1°, θmin = 1.9°
Absorption correction: numerical (SADABS; Sheldrick, 1996)h = −14→14
Tmin = 0.975, Tmax = 0.993k = −8→5
14047 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065Hydrogen site location: difference Fourier map
wR(F2) = 0.181H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.1146P)2 + 0.6555P] where P = (Fo2 + 2Fc2)/3
2724 reflections(Δ/σ)max = 0.001
239 parametersΔρmax = 0.71 e Å3
0 restraintsΔρmin = −0.29 e Å3
0 constraints
Experimental. 1H NMR (300 MHz, CDCl3) δ ppm 0.89 (t, J = 7.2 Hz, 3H), 1.28 (m, 2H), 1.56 (m, 2H), 3.49 (t, J = 7.3 Hz, 2H), 4.98 (s, 2H), 5.95 (s, 1H), 6.89 (d, J = 7.8 Hz, 1H), 7.06 (t, J = 7.2 Hz, 1H), 7.28 (t, J = 7.7 Hz, 1H), 7.34 (d, J = 7.5 Hz, 1H), 7.52 (m, 5H).13C NMR (75 MHz, CDCl3) δ ppm 14.1, 20.5, 30.7, 39.0, 45.7, 109.4, 120.7, 123.9, 126.4, 129.1, 129.6, 129.7, 130.5, 130.6, 134.6, 135.4, 142.5, 153.7, 161.9.
xyzUiso*/Ueq
O10.88328 (17)0.0841 (3)0.87585 (11)0.0267 (6)
O20.61570 (19)0.1425 (3)1.03172 (11)0.0346 (6)
N10.7648 (2)0.0891 (4)0.96528 (13)0.0249 (6)
N20.62702 (19)0.2468 (3)0.91468 (13)0.0221 (6)
N30.6120 (2)0.4044 (4)0.76450 (14)0.0253 (7)
H3N0.625 (3)0.466 (5)0.7271 (19)0.030*
C10.7968 (3)0.1375 (4)0.89869 (16)0.0243 (8)
C20.6618 (3)0.1580 (5)0.97655 (17)0.0282 (8)
C30.5292 (3)0.3561 (5)0.90814 (17)0.0290 (8)
H3A0.55190.48030.91300.035*
H3B0.48430.32850.94850.035*
C40.4598 (2)0.3329 (5)0.83796 (17)0.0272 (8)
C50.3498 (3)0.2811 (5)0.83711 (18)0.0308 (8)
H50.32220.25010.88160.037*
C60.2800 (3)0.2733 (5)0.77408 (18)0.0316 (8)
H60.20600.23510.77520.038*
C70.3188 (3)0.3216 (5)0.70925 (18)0.0295 (8)
H70.27070.32230.66580.035*
C80.4285 (3)0.3690 (4)0.70802 (17)0.0274 (8)
H80.45510.40170.66340.033*
C90.4995 (2)0.3694 (4)0.77089 (17)0.0241 (8)
C100.7038 (2)0.3312 (4)0.80057 (16)0.0239 (8)
C110.7095 (2)0.2491 (4)0.86567 (16)0.0215 (7)
C120.8299 (3)−0.0207 (5)1.01778 (16)0.0291 (8)
H12A0.80600.00081.06660.035*
H12B0.90830.01361.01890.035*
C130.8194 (3)−0.2160 (5)1.00075 (16)0.0290 (8)
H13A0.7411−0.25090.99970.035*
H13B0.8435−0.23810.95200.035*
C140.8874 (3)−0.3268 (5)1.05583 (17)0.0297 (8)
H14A0.8702−0.29371.10520.036*
H14B0.9666−0.30321.05230.036*
C150.8653 (3)−0.5210 (5)1.04422 (19)0.0377 (9)
H15A0.7890−0.54711.05310.057*
H15B0.9157−0.58871.07790.057*
H15C0.8768−0.55250.99420.057*
C160.8047 (2)0.3506 (4)0.76174 (16)0.0231 (7)
C170.8030 (2)0.2989 (5)0.68966 (16)0.0256 (8)
H170.73770.25060.66540.031*
C180.8963 (3)0.3177 (5)0.65308 (16)0.0279 (8)
H180.89430.28300.60370.033*
C190.9920 (3)0.3863 (5)0.68772 (17)0.0292 (8)
H191.05590.39790.66250.035*
C200.9944 (3)0.4382 (4)0.75934 (17)0.0272 (8)
H201.06010.48520.78350.033*
C210.9005 (2)0.4217 (4)0.79611 (17)0.0256 (8)
H210.90220.45940.84510.031*
U11U22U33U12U13U23
O10.0233 (12)0.0323 (14)0.0259 (12)0.0001 (10)0.0093 (9)−0.0012 (10)
O20.0315 (13)0.0513 (17)0.0230 (12)−0.0006 (11)0.0132 (10)0.0038 (11)
N10.0252 (14)0.0305 (17)0.0200 (13)0.0005 (12)0.0063 (11)0.0030 (11)
N20.0193 (13)0.0305 (17)0.0179 (13)0.0017 (11)0.0093 (10)0.0011 (11)
N30.0213 (14)0.0332 (18)0.0226 (14)−0.0016 (12)0.0080 (11)0.0057 (12)
C10.0251 (17)0.028 (2)0.0209 (16)−0.0040 (14)0.0075 (13)−0.0026 (14)
C20.0274 (18)0.034 (2)0.0242 (18)−0.0042 (15)0.0092 (14)−0.0018 (15)
C30.0250 (17)0.036 (2)0.0281 (17)0.0057 (14)0.0145 (14)−0.0007 (15)
C40.0240 (17)0.035 (2)0.0244 (17)0.0043 (14)0.0109 (13)−0.0012 (14)
C50.0239 (17)0.041 (2)0.0297 (18)0.0028 (15)0.0147 (14)0.0035 (15)
C60.0176 (16)0.044 (2)0.0348 (19)−0.0002 (15)0.0084 (14)0.0032 (16)
C70.0222 (17)0.038 (2)0.0293 (18)0.0033 (15)0.0059 (13)0.0009 (15)
C80.0256 (17)0.031 (2)0.0274 (17)0.0024 (14)0.0093 (14)0.0030 (14)
C90.0223 (16)0.023 (2)0.0285 (17)0.0013 (13)0.0112 (13)0.0003 (14)
C100.0216 (17)0.026 (2)0.0253 (17)0.0004 (13)0.0084 (13)−0.0035 (14)
C110.0197 (16)0.027 (2)0.0193 (15)−0.0018 (13)0.0082 (12)−0.0033 (13)
C120.0282 (18)0.038 (2)0.0221 (16)0.0009 (15)0.0079 (13)0.0041 (15)
C130.0294 (18)0.040 (2)0.0183 (16)−0.0014 (15)0.0059 (13)0.0011 (14)
C140.0256 (17)0.036 (2)0.0279 (17)0.0005 (15)0.0063 (14)0.0023 (15)
C150.040 (2)0.038 (2)0.036 (2)−0.0037 (17)0.0099 (16)−0.0002 (17)
C160.0218 (16)0.027 (2)0.0207 (16)0.0008 (13)0.0058 (12)0.0031 (13)
C170.0219 (16)0.034 (2)0.0220 (16)0.0008 (14)0.0060 (13)0.0016 (14)
C180.0276 (17)0.037 (2)0.0199 (16)0.0041 (15)0.0078 (13)0.0012 (15)
C190.0289 (18)0.031 (2)0.0299 (18)0.0049 (15)0.0152 (14)0.0062 (15)
C200.0238 (17)0.030 (2)0.0285 (17)−0.0012 (14)0.0045 (13)0.0048 (14)
C210.0266 (17)0.029 (2)0.0227 (16)0.0023 (14)0.0091 (13)0.0024 (14)
O1—C11.241 (4)C10—C111.355 (4)
O2—C21.218 (4)C10—C161.491 (4)
N1—C11.379 (4)C12—H12A0.990
N1—C21.396 (4)C12—H12B0.990
N1—C121.459 (4)C12—C131.528 (5)
N2—C21.363 (4)C13—H13A0.990
N2—C31.452 (4)C13—H13B0.990
N2—C111.417 (4)C13—C141.510 (5)
N3—H3N0.86 (4)C14—H14A0.990
N3—C91.413 (4)C14—H14B0.990
N3—C101.367 (4)C14—C151.519 (5)
C1—C111.453 (5)C15—H15A0.980
C3—H3A0.990C15—H15B0.980
C3—H3B0.990C15—H15C0.980
C3—C41.492 (5)C16—C171.390 (4)
C4—C51.396 (5)C16—C211.387 (5)
C4—C91.403 (4)C17—H170.950
C5—H50.950C17—C181.386 (4)
C5—C61.379 (5)C18—H180.950
C6—H60.950C18—C191.380 (5)
C6—C71.382 (5)C19—H190.950
C7—H70.950C19—C201.381 (5)
C7—C81.387 (4)C20—H200.950
C8—H80.950C20—C211.392 (4)
C8—C91.383 (5)C21—H210.950
C1—N1—C2111.6 (3)C1—C11—C10128.3 (3)
C1—N1—C12124.5 (3)N1—C12—H12A108.9
C2—N1—C12123.8 (2)N1—C12—H12B108.9
C2—N2—C3122.9 (2)N1—C12—C13113.2 (3)
C2—N2—C11111.2 (2)H12A—C12—H12B107.7
C3—N2—C11124.5 (3)H12A—C12—C13108.9
H3N—N3—C9115 (2)H12B—C12—C13108.9
H3N—N3—C10115 (2)C12—C13—H13A109.2
C9—N3—C10129.6 (3)C12—C13—H13B109.2
O1—C1—N1122.6 (3)C12—C13—C14112.2 (3)
O1—C1—C11131.4 (3)H13A—C13—H13B107.9
N1—C1—C11105.9 (3)H13A—C13—C14109.2
O2—C2—N1125.6 (3)H13B—C13—C14109.2
O2—C2—N2128.5 (3)C13—C14—H14A109.2
N1—C2—N2105.9 (2)C13—C14—H14B109.2
N2—C3—H3A108.9C13—C14—C15111.9 (3)
N2—C3—H3B108.9H14A—C14—H14B107.9
N2—C3—C4113.4 (3)H14A—C14—C15109.2
H3A—C3—H3B107.7H14B—C14—C15109.2
H3A—C3—C4108.9C14—C15—H15A109.5
H3B—C3—C4108.9C14—C15—H15B109.5
C3—C4—C5120.5 (3)C14—C15—H15C109.5
C3—C4—C9122.2 (3)H15A—C15—H15B109.5
C5—C4—C9117.3 (3)H15A—C15—H15C109.5
C4—C5—H5118.8H15B—C15—H15C109.5
C4—C5—C6122.5 (3)C10—C16—C17119.8 (3)
H5—C5—C6118.8C10—C16—C21121.0 (3)
C5—C6—H6120.4C17—C16—C21119.1 (3)
C5—C6—C7119.2 (3)C16—C17—H17119.9
H6—C6—C7120.4C16—C17—C18120.1 (3)
C6—C7—H7120.2H17—C17—C18119.9
C6—C7—C8119.7 (3)C17—C18—H18119.7
H7—C7—C8120.2C17—C18—C19120.6 (3)
C7—C8—H8119.6H18—C18—C19119.7
C7—C8—C9120.9 (3)C18—C19—H19120.2
H8—C8—C9119.6C18—C19—C20119.6 (3)
N3—C9—C4122.1 (3)H19—C19—C20120.2
N3—C9—C8117.7 (3)C19—C20—H20120.0
C4—C9—C8120.2 (3)C19—C20—C21120.1 (3)
N3—C10—C11126.4 (3)H20—C20—C21120.0
N3—C10—C16113.5 (3)C16—C21—C20120.5 (3)
C11—C10—C16120.1 (3)C16—C21—H21119.8
N2—C11—C1105.0 (2)C20—C21—H21119.8
N2—C11—C10126.6 (3)
C2—N1—C1—O1−176.4 (3)C9—N3—C10—C16158.5 (3)
C2—N1—C1—C111.5 (4)N3—C10—C11—N2−10.9 (6)
C12—N1—C1—O13.5 (5)N3—C10—C11—C1165.3 (3)
C12—N1—C1—C11−178.5 (3)C16—C10—C11—N2168.2 (3)
C3—N2—C2—O26.5 (5)C16—C10—C11—C1−15.6 (5)
C3—N2—C2—N1−172.0 (3)C2—N2—C11—C15.7 (4)
C11—N2—C2—O2173.7 (3)C2—N2—C11—C10−177.3 (3)
C11—N2—C2—N1−4.8 (4)C3—N2—C11—C1172.7 (3)
C1—N1—C2—O2−176.7 (3)C3—N2—C11—C10−10.4 (5)
C1—N1—C2—N22.0 (4)O1—C1—C11—N2173.5 (3)
C12—N1—C2—O23.4 (5)O1—C1—C11—C10−3.4 (6)
C12—N1—C2—N2−178.0 (3)N1—C1—C11—N2−4.2 (3)
C2—N2—C3—C4−136.8 (3)N1—C1—C11—C10178.9 (3)
C11—N2—C3—C457.7 (4)C1—N1—C12—C13−80.8 (4)
N2—C3—C4—C5121.8 (3)C2—N1—C12—C1399.1 (3)
N2—C3—C4—C9−61.3 (4)N1—C12—C13—C14−180.0 (2)
C3—C4—C5—C6174.0 (3)C12—C13—C14—C15172.6 (3)
C9—C4—C5—C6−3.1 (5)N3—C10—C16—C17−52.2 (4)
C4—C5—C6—C7−1.3 (5)N3—C10—C16—C21127.0 (3)
C5—C6—C7—C83.1 (5)C11—C10—C16—C17128.6 (3)
C6—C7—C8—C9−0.3 (5)C11—C10—C16—C21−52.2 (5)
C7—C8—C9—N3174.6 (3)C10—C16—C17—C18179.6 (3)
C7—C8—C9—C4−4.3 (5)C21—C16—C17—C180.3 (5)
C3—C4—C9—N39.9 (5)C16—C17—C18—C190.5 (5)
C3—C4—C9—C8−171.2 (3)C17—C18—C19—C20−0.6 (5)
C5—C4—C9—N3−173.1 (3)C18—C19—C20—C21−0.2 (5)
C5—C4—C9—C85.8 (5)C10—C16—C21—C20179.7 (3)
C10—N3—C9—C437.7 (5)C17—C16—C21—C20−1.1 (5)
C10—N3—C9—C8−141.3 (3)C19—C20—C21—C161.1 (5)
C9—N3—C10—C11−22.3 (6)
D—H···AD—HH···AD···AD—H···A
N3—H3N···O1i0.86 (4)2.10 (4)2.944 (3)165 (3)
C8—H8···O1i0.952.573.326 (4)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3N⋯O1i0.86 (4)2.10 (4)2.944 (3)165 (3)
C8—H8⋯O1i0.952.573.326 (4)136

Symmetry code: (i) .

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