| Literature DB >> 21580382 |
Gary S Nichol, Steven Gunawan, Justin Dietrich, Christopher Hulme.
Abstract
The title compound, C(21)H(21)N(3)O(2), was obtained following a five-step synthetic procedure yielding weakly diffracting rod and needle-shaped crystals which crystallized concomitantly. Structural analysis of a rod-shaped crystal showed that the central seven-membered heterocyclic ring adopts a conformation that is perhaps best described as a distorted boat, with the H-bearing (CH(2) and NH) atoms lying well out of the least-squares mean plane fitted through the other five atoms in the ring (r.m.s. deviation 0.075 Å). In the crystal, the compound packs as a twisted chain, which propagates along the b axis by means of an R(1) (2)(6) motif formed by one of the carbonyl O atoms acting as a bifurcated acceptor in an N-H⋯O and C-H⋯O inter-action. No diffraction was observed from the needle-shaped crystals.Entities:
Year: 2010 PMID: 21580382 PMCID: PMC2983587 DOI: 10.1107/S1600536810005477
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C21H21N3O2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 2525 reflections |
| θ = 2.2–24.8° | |
| µ = 0.09 mm−1 | |
| β = 95.494 (5)° | Rod, yellow |
| 0.29 × 0.14 × 0.08 mm | |
| Bruker Kappa APEXII DUO CCD diffractometer | 2724 independent reflections |
| Radiation source: fine-focus sealed tube with Miracol optics | 1908 reflections with |
| graphite | |
| φ and ω scans | θmax = 24.1°, θmin = 1.9° |
| Absorption correction: numerical ( | |
| 14047 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2724 reflections | (Δ/σ)max = 0.001 |
| 239 parameters | Δρmax = 0.71 e Å−3 |
| 0 restraints | Δρmin = −0.29 e Å−3 |
| 0 constraints |
| Experimental. 1H NMR (300 MHz, CDCl3) δ ppm 0.89 (t, |
| O1 | 0.88328 (17) | 0.0841 (3) | 0.87585 (11) | 0.0267 (6) | |
| O2 | 0.61570 (19) | 0.1425 (3) | 1.03172 (11) | 0.0346 (6) | |
| N1 | 0.7648 (2) | 0.0891 (4) | 0.96528 (13) | 0.0249 (6) | |
| N2 | 0.62702 (19) | 0.2468 (3) | 0.91468 (13) | 0.0221 (6) | |
| N3 | 0.6120 (2) | 0.4044 (4) | 0.76450 (14) | 0.0253 (7) | |
| H3N | 0.625 (3) | 0.466 (5) | 0.7271 (19) | 0.030* | |
| C1 | 0.7968 (3) | 0.1375 (4) | 0.89869 (16) | 0.0243 (8) | |
| C2 | 0.6618 (3) | 0.1580 (5) | 0.97655 (17) | 0.0282 (8) | |
| C3 | 0.5292 (3) | 0.3561 (5) | 0.90814 (17) | 0.0290 (8) | |
| H3A | 0.5519 | 0.4803 | 0.9130 | 0.035* | |
| H3B | 0.4843 | 0.3285 | 0.9485 | 0.035* | |
| C4 | 0.4598 (2) | 0.3329 (5) | 0.83796 (17) | 0.0272 (8) | |
| C5 | 0.3498 (3) | 0.2811 (5) | 0.83711 (18) | 0.0308 (8) | |
| H5 | 0.3222 | 0.2501 | 0.8816 | 0.037* | |
| C6 | 0.2800 (3) | 0.2733 (5) | 0.77408 (18) | 0.0316 (8) | |
| H6 | 0.2060 | 0.2351 | 0.7752 | 0.038* | |
| C7 | 0.3188 (3) | 0.3216 (5) | 0.70925 (18) | 0.0295 (8) | |
| H7 | 0.2707 | 0.3223 | 0.6658 | 0.035* | |
| C8 | 0.4285 (3) | 0.3690 (4) | 0.70802 (17) | 0.0274 (8) | |
| H8 | 0.4551 | 0.4017 | 0.6634 | 0.033* | |
| C9 | 0.4995 (2) | 0.3694 (4) | 0.77089 (17) | 0.0241 (8) | |
| C10 | 0.7038 (2) | 0.3312 (4) | 0.80057 (16) | 0.0239 (8) | |
| C11 | 0.7095 (2) | 0.2491 (4) | 0.86567 (16) | 0.0215 (7) | |
| C12 | 0.8299 (3) | −0.0207 (5) | 1.01778 (16) | 0.0291 (8) | |
| H12A | 0.8060 | 0.0008 | 1.0666 | 0.035* | |
| H12B | 0.9083 | 0.0136 | 1.0189 | 0.035* | |
| C13 | 0.8194 (3) | −0.2160 (5) | 1.00075 (16) | 0.0290 (8) | |
| H13A | 0.7411 | −0.2509 | 0.9997 | 0.035* | |
| H13B | 0.8435 | −0.2381 | 0.9520 | 0.035* | |
| C14 | 0.8874 (3) | −0.3268 (5) | 1.05583 (17) | 0.0297 (8) | |
| H14A | 0.8702 | −0.2937 | 1.1052 | 0.036* | |
| H14B | 0.9666 | −0.3032 | 1.0523 | 0.036* | |
| C15 | 0.8653 (3) | −0.5210 (5) | 1.04422 (19) | 0.0377 (9) | |
| H15A | 0.7890 | −0.5471 | 1.0531 | 0.057* | |
| H15B | 0.9157 | −0.5887 | 1.0779 | 0.057* | |
| H15C | 0.8768 | −0.5525 | 0.9942 | 0.057* | |
| C16 | 0.8047 (2) | 0.3506 (4) | 0.76174 (16) | 0.0231 (7) | |
| C17 | 0.8030 (2) | 0.2989 (5) | 0.68966 (16) | 0.0256 (8) | |
| H17 | 0.7377 | 0.2506 | 0.6654 | 0.031* | |
| C18 | 0.8963 (3) | 0.3177 (5) | 0.65308 (16) | 0.0279 (8) | |
| H18 | 0.8943 | 0.2830 | 0.6037 | 0.033* | |
| C19 | 0.9920 (3) | 0.3863 (5) | 0.68772 (17) | 0.0292 (8) | |
| H19 | 1.0559 | 0.3979 | 0.6625 | 0.035* | |
| C20 | 0.9944 (3) | 0.4382 (4) | 0.75934 (17) | 0.0272 (8) | |
| H20 | 1.0601 | 0.4852 | 0.7835 | 0.033* | |
| C21 | 0.9005 (2) | 0.4217 (4) | 0.79611 (17) | 0.0256 (8) | |
| H21 | 0.9022 | 0.4594 | 0.8451 | 0.031* |
| O1 | 0.0233 (12) | 0.0323 (14) | 0.0259 (12) | 0.0001 (10) | 0.0093 (9) | −0.0012 (10) |
| O2 | 0.0315 (13) | 0.0513 (17) | 0.0230 (12) | −0.0006 (11) | 0.0132 (10) | 0.0038 (11) |
| N1 | 0.0252 (14) | 0.0305 (17) | 0.0200 (13) | 0.0005 (12) | 0.0063 (11) | 0.0030 (11) |
| N2 | 0.0193 (13) | 0.0305 (17) | 0.0179 (13) | 0.0017 (11) | 0.0093 (10) | 0.0011 (11) |
| N3 | 0.0213 (14) | 0.0332 (18) | 0.0226 (14) | −0.0016 (12) | 0.0080 (11) | 0.0057 (12) |
| C1 | 0.0251 (17) | 0.028 (2) | 0.0209 (16) | −0.0040 (14) | 0.0075 (13) | −0.0026 (14) |
| C2 | 0.0274 (18) | 0.034 (2) | 0.0242 (18) | −0.0042 (15) | 0.0092 (14) | −0.0018 (15) |
| C3 | 0.0250 (17) | 0.036 (2) | 0.0281 (17) | 0.0057 (14) | 0.0145 (14) | −0.0007 (15) |
| C4 | 0.0240 (17) | 0.035 (2) | 0.0244 (17) | 0.0043 (14) | 0.0109 (13) | −0.0012 (14) |
| C5 | 0.0239 (17) | 0.041 (2) | 0.0297 (18) | 0.0028 (15) | 0.0147 (14) | 0.0035 (15) |
| C6 | 0.0176 (16) | 0.044 (2) | 0.0348 (19) | −0.0002 (15) | 0.0084 (14) | 0.0032 (16) |
| C7 | 0.0222 (17) | 0.038 (2) | 0.0293 (18) | 0.0033 (15) | 0.0059 (13) | 0.0009 (15) |
| C8 | 0.0256 (17) | 0.031 (2) | 0.0274 (17) | 0.0024 (14) | 0.0093 (14) | 0.0030 (14) |
| C9 | 0.0223 (16) | 0.023 (2) | 0.0285 (17) | 0.0013 (13) | 0.0112 (13) | 0.0003 (14) |
| C10 | 0.0216 (17) | 0.026 (2) | 0.0253 (17) | 0.0004 (13) | 0.0084 (13) | −0.0035 (14) |
| C11 | 0.0197 (16) | 0.027 (2) | 0.0193 (15) | −0.0018 (13) | 0.0082 (12) | −0.0033 (13) |
| C12 | 0.0282 (18) | 0.038 (2) | 0.0221 (16) | 0.0009 (15) | 0.0079 (13) | 0.0041 (15) |
| C13 | 0.0294 (18) | 0.040 (2) | 0.0183 (16) | −0.0014 (15) | 0.0059 (13) | 0.0011 (14) |
| C14 | 0.0256 (17) | 0.036 (2) | 0.0279 (17) | 0.0005 (15) | 0.0063 (14) | 0.0023 (15) |
| C15 | 0.040 (2) | 0.038 (2) | 0.036 (2) | −0.0037 (17) | 0.0099 (16) | −0.0002 (17) |
| C16 | 0.0218 (16) | 0.027 (2) | 0.0207 (16) | 0.0008 (13) | 0.0058 (12) | 0.0031 (13) |
| C17 | 0.0219 (16) | 0.034 (2) | 0.0220 (16) | 0.0008 (14) | 0.0060 (13) | 0.0016 (14) |
| C18 | 0.0276 (17) | 0.037 (2) | 0.0199 (16) | 0.0041 (15) | 0.0078 (13) | 0.0012 (15) |
| C19 | 0.0289 (18) | 0.031 (2) | 0.0299 (18) | 0.0049 (15) | 0.0152 (14) | 0.0062 (15) |
| C20 | 0.0238 (17) | 0.030 (2) | 0.0285 (17) | −0.0012 (14) | 0.0045 (13) | 0.0048 (14) |
| C21 | 0.0266 (17) | 0.029 (2) | 0.0227 (16) | 0.0023 (14) | 0.0091 (13) | 0.0024 (14) |
| O1—C1 | 1.241 (4) | C10—C11 | 1.355 (4) |
| O2—C2 | 1.218 (4) | C10—C16 | 1.491 (4) |
| N1—C1 | 1.379 (4) | C12—H12A | 0.990 |
| N1—C2 | 1.396 (4) | C12—H12B | 0.990 |
| N1—C12 | 1.459 (4) | C12—C13 | 1.528 (5) |
| N2—C2 | 1.363 (4) | C13—H13A | 0.990 |
| N2—C3 | 1.452 (4) | C13—H13B | 0.990 |
| N2—C11 | 1.417 (4) | C13—C14 | 1.510 (5) |
| N3—H3N | 0.86 (4) | C14—H14A | 0.990 |
| N3—C9 | 1.413 (4) | C14—H14B | 0.990 |
| N3—C10 | 1.367 (4) | C14—C15 | 1.519 (5) |
| C1—C11 | 1.453 (5) | C15—H15A | 0.980 |
| C3—H3A | 0.990 | C15—H15B | 0.980 |
| C3—H3B | 0.990 | C15—H15C | 0.980 |
| C3—C4 | 1.492 (5) | C16—C17 | 1.390 (4) |
| C4—C5 | 1.396 (5) | C16—C21 | 1.387 (5) |
| C4—C9 | 1.403 (4) | C17—H17 | 0.950 |
| C5—H5 | 0.950 | C17—C18 | 1.386 (4) |
| C5—C6 | 1.379 (5) | C18—H18 | 0.950 |
| C6—H6 | 0.950 | C18—C19 | 1.380 (5) |
| C6—C7 | 1.382 (5) | C19—H19 | 0.950 |
| C7—H7 | 0.950 | C19—C20 | 1.381 (5) |
| C7—C8 | 1.387 (4) | C20—H20 | 0.950 |
| C8—H8 | 0.950 | C20—C21 | 1.392 (4) |
| C8—C9 | 1.383 (5) | C21—H21 | 0.950 |
| C1—N1—C2 | 111.6 (3) | C1—C11—C10 | 128.3 (3) |
| C1—N1—C12 | 124.5 (3) | N1—C12—H12A | 108.9 |
| C2—N1—C12 | 123.8 (2) | N1—C12—H12B | 108.9 |
| C2—N2—C3 | 122.9 (2) | N1—C12—C13 | 113.2 (3) |
| C2—N2—C11 | 111.2 (2) | H12A—C12—H12B | 107.7 |
| C3—N2—C11 | 124.5 (3) | H12A—C12—C13 | 108.9 |
| H3N—N3—C9 | 115 (2) | H12B—C12—C13 | 108.9 |
| H3N—N3—C10 | 115 (2) | C12—C13—H13A | 109.2 |
| C9—N3—C10 | 129.6 (3) | C12—C13—H13B | 109.2 |
| O1—C1—N1 | 122.6 (3) | C12—C13—C14 | 112.2 (3) |
| O1—C1—C11 | 131.4 (3) | H13A—C13—H13B | 107.9 |
| N1—C1—C11 | 105.9 (3) | H13A—C13—C14 | 109.2 |
| O2—C2—N1 | 125.6 (3) | H13B—C13—C14 | 109.2 |
| O2—C2—N2 | 128.5 (3) | C13—C14—H14A | 109.2 |
| N1—C2—N2 | 105.9 (2) | C13—C14—H14B | 109.2 |
| N2—C3—H3A | 108.9 | C13—C14—C15 | 111.9 (3) |
| N2—C3—H3B | 108.9 | H14A—C14—H14B | 107.9 |
| N2—C3—C4 | 113.4 (3) | H14A—C14—C15 | 109.2 |
| H3A—C3—H3B | 107.7 | H14B—C14—C15 | 109.2 |
| H3A—C3—C4 | 108.9 | C14—C15—H15A | 109.5 |
| H3B—C3—C4 | 108.9 | C14—C15—H15B | 109.5 |
| C3—C4—C5 | 120.5 (3) | C14—C15—H15C | 109.5 |
| C3—C4—C9 | 122.2 (3) | H15A—C15—H15B | 109.5 |
| C5—C4—C9 | 117.3 (3) | H15A—C15—H15C | 109.5 |
| C4—C5—H5 | 118.8 | H15B—C15—H15C | 109.5 |
| C4—C5—C6 | 122.5 (3) | C10—C16—C17 | 119.8 (3) |
| H5—C5—C6 | 118.8 | C10—C16—C21 | 121.0 (3) |
| C5—C6—H6 | 120.4 | C17—C16—C21 | 119.1 (3) |
| C5—C6—C7 | 119.2 (3) | C16—C17—H17 | 119.9 |
| H6—C6—C7 | 120.4 | C16—C17—C18 | 120.1 (3) |
| C6—C7—H7 | 120.2 | H17—C17—C18 | 119.9 |
| C6—C7—C8 | 119.7 (3) | C17—C18—H18 | 119.7 |
| H7—C7—C8 | 120.2 | C17—C18—C19 | 120.6 (3) |
| C7—C8—H8 | 119.6 | H18—C18—C19 | 119.7 |
| C7—C8—C9 | 120.9 (3) | C18—C19—H19 | 120.2 |
| H8—C8—C9 | 119.6 | C18—C19—C20 | 119.6 (3) |
| N3—C9—C4 | 122.1 (3) | H19—C19—C20 | 120.2 |
| N3—C9—C8 | 117.7 (3) | C19—C20—H20 | 120.0 |
| C4—C9—C8 | 120.2 (3) | C19—C20—C21 | 120.1 (3) |
| N3—C10—C11 | 126.4 (3) | H20—C20—C21 | 120.0 |
| N3—C10—C16 | 113.5 (3) | C16—C21—C20 | 120.5 (3) |
| C11—C10—C16 | 120.1 (3) | C16—C21—H21 | 119.8 |
| N2—C11—C1 | 105.0 (2) | C20—C21—H21 | 119.8 |
| N2—C11—C10 | 126.6 (3) | ||
| C2—N1—C1—O1 | −176.4 (3) | C9—N3—C10—C16 | 158.5 (3) |
| C2—N1—C1—C11 | 1.5 (4) | N3—C10—C11—N2 | −10.9 (6) |
| C12—N1—C1—O1 | 3.5 (5) | N3—C10—C11—C1 | 165.3 (3) |
| C12—N1—C1—C11 | −178.5 (3) | C16—C10—C11—N2 | 168.2 (3) |
| C3—N2—C2—O2 | 6.5 (5) | C16—C10—C11—C1 | −15.6 (5) |
| C3—N2—C2—N1 | −172.0 (3) | C2—N2—C11—C1 | 5.7 (4) |
| C11—N2—C2—O2 | 173.7 (3) | C2—N2—C11—C10 | −177.3 (3) |
| C11—N2—C2—N1 | −4.8 (4) | C3—N2—C11—C1 | 172.7 (3) |
| C1—N1—C2—O2 | −176.7 (3) | C3—N2—C11—C10 | −10.4 (5) |
| C1—N1—C2—N2 | 2.0 (4) | O1—C1—C11—N2 | 173.5 (3) |
| C12—N1—C2—O2 | 3.4 (5) | O1—C1—C11—C10 | −3.4 (6) |
| C12—N1—C2—N2 | −178.0 (3) | N1—C1—C11—N2 | −4.2 (3) |
| C2—N2—C3—C4 | −136.8 (3) | N1—C1—C11—C10 | 178.9 (3) |
| C11—N2—C3—C4 | 57.7 (4) | C1—N1—C12—C13 | −80.8 (4) |
| N2—C3—C4—C5 | 121.8 (3) | C2—N1—C12—C13 | 99.1 (3) |
| N2—C3—C4—C9 | −61.3 (4) | N1—C12—C13—C14 | −180.0 (2) |
| C3—C4—C5—C6 | 174.0 (3) | C12—C13—C14—C15 | 172.6 (3) |
| C9—C4—C5—C6 | −3.1 (5) | N3—C10—C16—C17 | −52.2 (4) |
| C4—C5—C6—C7 | −1.3 (5) | N3—C10—C16—C21 | 127.0 (3) |
| C5—C6—C7—C8 | 3.1 (5) | C11—C10—C16—C17 | 128.6 (3) |
| C6—C7—C8—C9 | −0.3 (5) | C11—C10—C16—C21 | −52.2 (5) |
| C7—C8—C9—N3 | 174.6 (3) | C10—C16—C17—C18 | 179.6 (3) |
| C7—C8—C9—C4 | −4.3 (5) | C21—C16—C17—C18 | 0.3 (5) |
| C3—C4—C9—N3 | 9.9 (5) | C16—C17—C18—C19 | 0.5 (5) |
| C3—C4—C9—C8 | −171.2 (3) | C17—C18—C19—C20 | −0.6 (5) |
| C5—C4—C9—N3 | −173.1 (3) | C18—C19—C20—C21 | −0.2 (5) |
| C5—C4—C9—C8 | 5.8 (5) | C10—C16—C21—C20 | 179.7 (3) |
| C10—N3—C9—C4 | 37.7 (5) | C17—C16—C21—C20 | −1.1 (5) |
| C10—N3—C9—C8 | −141.3 (3) | C19—C20—C21—C16 | 1.1 (5) |
| C9—N3—C10—C11 | −22.3 (6) |
| H··· | ||||
| N3—H3N···O1i | 0.86 (4) | 2.10 (4) | 2.944 (3) | 165 (3) |
| C8—H8···O1i | 0.95 | 2.57 | 3.326 (4) | 136 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.86 (4) | 2.10 (4) | 2.944 (3) | 165 (3) |
| C8—H8⋯O1i | 0.95 | 2.57 | 3.326 (4) | 136 |
Symmetry code: (i) .