Literature DB >> 21580368

2-Phenyl-imidazole dihydrogen phosphate phospho-ric acid.

Dao-Cheng Xia1, Ji-Huan Yao.   

Abstract

The crystal structure of the title compound, C(9)H(9)N(2) (+)·H(2)PO(4) (-)·H(3)PO(4), is stabilized by N-H⋯O and O-H⋯O hydrogen-bonding inter-actions, resulting in a two-dimensional network.

Entities:  

Year:  2010        PMID: 21580368      PMCID: PMC2983698          DOI: 10.1107/S1600536810004927

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Liu et al. (2008 ▶); Yang et al. (2008 ▶); Xia et al. (2009 ▶).

Experimental

Crystal data

C9H9N2 +·H2PO4 −·H3PO4 M = 340.16 Monoclinic, a = 17.1875 (12) Å b = 4.7220 (3) Å c = 17.7585 (14) Å β = 99.767 (7)° V = 1420.38 (17) Å3 Z = 4 Mo Kα radiation μ = 0.35 mm−1 T = 293 K 0.25 × 0.22 × 0.20 mm

Data collection

Oxford Diffraction Gemini R Ultra diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006 ▶) T min = 0.61, T max = 0.84 5555 measured reflections 2893 independent reflections 1549 reflections with I > 2.0 σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.080 S = 0.87 2893 reflections 190 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.37 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2006 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810004927/pv2259sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810004927/pv2259Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H9N2+·H2PO4·H3PO4F(000) = 704
Mr = 340.16Dx = 1.591 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2893 reflections
a = 17.1875 (12) Åθ = 2.3–26.4°
b = 4.7220 (3) ŵ = 0.35 mm1
c = 17.7585 (14) ÅT = 293 K
β = 99.767 (7)°Block, colorless
V = 1420.38 (17) Å30.25 × 0.22 × 0.20 mm
Z = 4
Oxford Diffraction Gemini R Ultra diffractometer2893 independent reflections
Radiation source: fine-focus sealed tube1549 reflections with I > 2.0 σ(I)
graphiteRint = 0.038
Detector resolution: 10.0 pixels mm-1θmax = 26.4°, θmin = 2.3°
ω scanh = −21→21
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006)k = −5→4
Tmin = 0.61, Tmax = 0.84l = −13→22
5555 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.080H-atom parameters constrained
S = 0.87w = 1/[σ2(Fo2) + (0.0302P)2] where P = (Fo2 + 2Fc2)/3
2893 reflections(Δ/σ)max < 0.001
190 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.37 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.21882 (4)−0.03732 (14)0.43687 (4)0.0302 (2)
P20.42236 (4)0.04439 (15)0.89806 (4)0.0299 (2)
O40.35030 (10)−0.0447 (4)0.84416 (10)0.0393 (5)
O50.28575 (10)0.0703 (4)0.50061 (9)0.0381 (5)
H5A0.30470.21620.48640.057*
O30.48015 (11)−0.2115 (3)0.91299 (11)0.0381 (5)
H3A0.5199−0.16350.94250.057*
O60.18630 (11)−0.3002 (3)0.46455 (11)0.0388 (5)
O20.40773 (10)0.1605 (4)0.97411 (10)0.0380 (5)
O70.25178 (11)−0.0717 (4)0.36199 (10)0.0428 (5)
H70.2877−0.18820.36820.064*
O10.46827 (11)0.2710 (4)0.85825 (11)0.0399 (5)
H10.43990.40910.84660.060*
O80.15458 (10)0.1928 (4)0.41974 (11)0.0405 (5)
H8A0.17380.33650.40450.061*
N20.26383 (14)0.5520 (5)0.61475 (12)0.0382 (6)
H20.23090.61520.57650.046*
N10.31292 (13)0.3278 (5)0.71534 (12)0.0395 (6)
H1B0.31760.21810.75450.047*
C50.16191 (18)0.0460 (7)0.72484 (19)0.0548 (9)
H50.20370.01780.76490.066*
C80.37239 (17)0.4892 (6)0.69554 (17)0.0443 (8)
H80.42420.49910.72120.053*
C60.17162 (16)0.2248 (6)0.66598 (16)0.0361 (7)
C30.0300 (2)−0.0510 (8)0.6673 (2)0.0657 (10)
H3−0.0174−0.14540.66760.079*
C90.34158 (17)0.6299 (6)0.63224 (17)0.0429 (8)
H90.36790.75650.60520.051*
C20.03804 (19)0.1260 (9)0.6094 (2)0.0719 (11)
H2A−0.00430.15310.56990.086*
C70.24664 (16)0.3649 (6)0.66528 (15)0.0332 (7)
C10.10825 (19)0.2679 (8)0.60773 (18)0.0604 (10)
H1A0.11280.39110.56780.072*
C40.0923 (2)−0.0905 (8)0.7256 (2)0.0691 (10)
H40.0870−0.21090.76580.083*
U11U22U33U12U13U23
P10.0327 (4)0.0264 (4)0.0305 (4)−0.0009 (3)0.0027 (3)−0.0005 (3)
P20.0291 (4)0.0297 (4)0.0301 (4)0.0019 (3)0.0027 (3)0.0022 (3)
O40.0320 (10)0.0512 (12)0.0313 (11)−0.0061 (9)−0.0042 (9)0.0072 (9)
O50.0402 (11)0.0425 (11)0.0293 (11)−0.0111 (9)−0.0012 (9)0.0036 (9)
O30.0348 (11)0.0290 (10)0.0457 (13)0.0045 (8)−0.0063 (9)−0.0022 (9)
O60.0451 (12)0.0271 (10)0.0430 (13)−0.0067 (9)0.0036 (10)−0.0010 (9)
O20.0331 (11)0.0520 (12)0.0283 (11)0.0102 (9)0.0033 (9)−0.0007 (9)
O70.0525 (13)0.0445 (12)0.0315 (12)0.0114 (10)0.0077 (9)0.0030 (9)
O10.0448 (12)0.0311 (10)0.0461 (13)0.0029 (9)0.0136 (10)0.0066 (9)
O80.0350 (12)0.0289 (10)0.0547 (15)0.0002 (9)−0.0011 (10)−0.0008 (9)
N20.0431 (15)0.0443 (14)0.0263 (14)0.0063 (12)0.0031 (11)0.0070 (12)
N10.0407 (16)0.0522 (15)0.0246 (14)−0.0007 (12)0.0023 (12)0.0090 (11)
C50.0418 (19)0.065 (2)0.054 (2)−0.0073 (17)−0.0042 (16)0.0145 (18)
C80.0353 (17)0.061 (2)0.0354 (18)−0.0041 (15)0.0028 (14)0.0083 (16)
C60.0346 (18)0.0438 (17)0.0296 (19)0.0066 (14)0.0049 (14)−0.0059 (14)
C30.042 (2)0.079 (3)0.077 (3)−0.0129 (19)0.013 (2)−0.012 (2)
C90.0433 (19)0.0520 (19)0.0337 (19)−0.0065 (16)0.0073 (15)0.0051 (15)
C20.041 (2)0.117 (3)0.051 (3)−0.001 (2)−0.0093 (18)−0.004 (2)
C70.0368 (17)0.0394 (16)0.0234 (16)0.0082 (14)0.0052 (14)−0.0019 (13)
C10.041 (2)0.097 (3)0.039 (2)−0.0023 (18)−0.0026 (17)0.0111 (18)
C40.051 (2)0.081 (3)0.074 (3)−0.0155 (19)0.007 (2)0.018 (2)
P1—O61.4790 (18)N1—C81.368 (3)
P1—O71.5400 (19)N1—H1B0.8600
P1—O81.5421 (18)C5—C41.361 (4)
P1—O51.5559 (17)C5—C61.376 (4)
P2—O41.4916 (18)C5—H50.9300
P2—O21.5175 (19)C8—C91.335 (4)
P2—O31.5579 (18)C8—H80.9300
P2—O11.568 (2)C6—C11.384 (4)
O5—H5A0.8200C6—C71.451 (4)
O3—H3A0.8200C3—C21.350 (5)
O7—H70.8200C3—C41.370 (4)
O1—H10.8200C3—H30.9300
O8—H8A0.8200C9—H90.9300
N2—C71.328 (3)C2—C11.385 (5)
N2—C91.370 (3)C2—H2A0.9300
N2—H20.8600C1—H1A0.9300
N1—C71.332 (3)C4—H40.9300
O6—P1—O7114.43 (11)C6—C5—H5119.4
O6—P1—O8111.01 (11)C9—C8—N1106.7 (3)
O7—P1—O8105.07 (11)C9—C8—H8126.7
O6—P1—O5107.86 (10)N1—C8—H8126.7
O7—P1—O5109.12 (10)C5—C6—C1118.5 (3)
O8—P1—O5109.25 (10)C5—C6—C7120.6 (3)
O4—P2—O2115.35 (11)C1—C6—C7120.9 (3)
O4—P2—O3109.06 (11)C2—C3—C4119.5 (3)
O2—P2—O3109.01 (10)C2—C3—H3120.3
O4—P2—O1109.26 (11)C4—C3—H3120.3
O2—P2—O1109.08 (11)C8—C9—N2106.8 (3)
O3—P2—O1104.53 (11)C8—C9—H9126.6
P1—O5—H5A109.5N2—C9—H9126.6
P2—O3—H3A109.5C3—C2—C1121.2 (3)
P1—O7—H7109.5C3—C2—H2A119.4
P2—O1—H1109.5C1—C2—H2A119.4
P1—O8—H8A109.5N2—C7—N1106.0 (2)
C7—N2—C9110.2 (2)N2—C7—C6127.5 (2)
C7—N2—H2124.9N1—C7—C6126.5 (3)
C9—N2—H2124.9C6—C1—C2119.4 (3)
C7—N1—C8110.3 (2)C6—C1—H1A120.3
C7—N1—H1B124.9C2—C1—H1A120.3
C8—N1—H1B124.9C5—C4—C3120.3 (3)
C4—C5—C6121.2 (3)C5—C4—H4119.9
C4—C5—H5119.4C3—C4—H4119.9
D—H···AD—HH···AD···AD—H···A
O5—H5A···O2i0.821.912.563 (2)136
O3—H3A···O2ii0.821.762.546 (2)159
O8—H8A···O6iii0.822.012.553 (2)123
N2—H2···O6iii0.862.052.859 (3)157
N1—H1B···O40.862.022.871 (3)169
O7—H7···O4iv0.821.762.536 (3)158
O1—H1···O3iii0.822.192.625 (2)113
C9—H9···O5iii0.932.603.154 (3)119
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5A⋯O2i0.821.912.563 (2)136
O3—H3A⋯O2ii0.821.762.546 (2)159
O8—H8A⋯O6iii0.822.012.553 (2)123
N2—H2⋯O6iii0.862.052.859 (3)157
N1—H1B⋯O40.862.022.871 (3)169
O7—H7⋯O4iv0.821.762.536 (3)158
O1—H1⋯O3iii0.822.192.625 (2)113

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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