Literature DB >> 21580350

(E)-1,2-Bis(1-propyl-5,6-dimethyl-1H-benzimidazol-2-yl)ethene.

Robert T Stibrany1, Joseph A Potenza.   

Abstract

In the title compound, C(26)H(32)N(4), the essentially planar (r.m.s. deviations of 0.0053 and 0.0242 Å) benzimidazole fragments are trans with respect to a central ethene fragment, and are canted in opposite directions by 2.78 (6) and 5.87 (6)° with respect to the ethene plane, giving the mol-ecule a propeller conformation. The terminal ethyl fragments of the pendant n-propyl groups protrude to either side of the benzimidazole planes. Overall, the mol-ecule exhibits a pseudo-center of symmetry at the mid-point of the ethene fragment. Both π-π stacking and typical C-H⋯π inter-actions are notably absent, as are inter-molecular hydrogen bonds. When viewed along the a axis, the structure appears as criss-crossed layers of mol-ecules with the planar fragments separated along the c-cell direction by the protruding ethyl groups.

Entities:  

Year:  2010        PMID: 21580350      PMCID: PMC2983724          DOI: 10.1107/S1600536810003405

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of bis­(imidazoles), bis­(benzimidazoles) and their complexes with metal ions, see: Knapp et al. (1990 ▶); Stibrany et al. (2002 ▶, 2003 ▶, 2004 ▶); Stibrany & Potenza (2008 ▶). The title compound was prepared from rac-1,2-bis­(1H-5,6-dimethyl­benzimidazol-2-yl)-1-hydroxy­ethane (Taffs et al., 1961 ▶). Alkyl­ation was effected according to a reported method (Stibrany et al., 2004 ▶). For related structures see: Stibrany et al. (2005 ▶); Stibrany & Potenza (2006a ▶,b ▶, 2009 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C26H32N4 M = 400.56 Monoclinic, a = 12.7822 (15) Å b = 10.4802 (12) Å c = 16.5944 (19) Å β = 100.284 (2)° V = 2187.3 (4) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 100 K 0.32 × 0.28 × 0.11 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Blessing, 1995 ▶) T min = 0.795, T max = 1.00 20415 measured reflections 4324 independent reflections 3596 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.151 S = 1.00 4324 reflections 277 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT-Plus (Bruker, 2000 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and ORTEP-32 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810003405/jh2128sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810003405/jh2128Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H32N4F(000) = 864
Mr = 400.56Dx = 1.216 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 953 reflections
a = 12.7822 (15) Åθ = 2.3–25.6°
b = 10.4802 (12) ŵ = 0.07 mm1
c = 16.5944 (19) ÅT = 100 K
β = 100.284 (2)°Plate, yellow
V = 2187.3 (4) Å30.32 × 0.28 × 0.11 mm
Z = 4
Bruker SMART CCD area-detector diffractometer4324 independent reflections
Radiation source: fine-focus sealed tube3596 reflections with I > 2σ(I)
graphiteRint = 0.041
φ and ω scansθmax = 26.1°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Blessing, 1995)h = −15→15
Tmin = 0.795, Tmax = 1.00k = −12→12
20415 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.151H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.090P)2 + 1.071P] where P = (Fo2 + 2Fc2)/3
4324 reflections(Δ/σ)max < 0.001
277 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N23−0.03575 (12)0.86314 (15)0.21188 (9)0.0185 (4)
N130.04680 (12)0.38211 (15)0.29290 (9)0.0184 (4)
C130.12082 (14)0.28848 (18)0.32073 (10)0.0162 (4)
N110.20831 (12)0.47168 (14)0.32962 (9)0.0164 (3)
N21−0.19800 (12)0.77194 (14)0.18947 (9)0.0164 (3)
C160.29931 (14)0.13963 (18)0.38184 (11)0.0179 (4)
C24−0.10049 (14)1.08026 (18)0.15724 (11)0.0188 (4)
H24−0.03271.12020.16770.023*
C110.22163 (14)0.34258 (17)0.34411 (10)0.0154 (4)
C21−0.21246 (14)0.89625 (18)0.16303 (10)0.0168 (4)
C26−0.29142 (15)1.08870 (18)0.10388 (11)0.0187 (4)
C170.31163 (14)0.27017 (18)0.37496 (11)0.0182 (4)
H170.37920.30930.39070.022*
C23−0.11131 (14)0.95179 (18)0.17796 (10)0.0170 (4)
C150.19728 (14)0.08225 (18)0.35742 (10)0.0175 (4)
C140.10936 (14)0.15596 (18)0.32759 (11)0.0179 (4)
H140.04160.11720.31180.021*
C25−0.18941 (15)1.14824 (18)0.12140 (11)0.0191 (4)
C120.10150 (14)0.49004 (17)0.29953 (11)0.0164 (4)
C22−0.09024 (14)0.75650 (18)0.21683 (11)0.0167 (4)
C27−0.30311 (14)0.96279 (18)0.12593 (11)0.0180 (4)
H27−0.37090.92270.11610.022*
C2−0.04547 (15)0.63331 (18)0.24519 (11)0.0186 (4)
H2−0.09180.56190.24180.022*
C10.05794 (14)0.61551 (18)0.27588 (11)0.0178 (4)
H10.10420.68720.28240.021*
C190.39431 (15)0.05820 (19)0.41661 (12)0.0221 (4)
H19A0.45800.11190.42840.033*
H19B0.4045−0.00750.37670.033*
H19C0.38210.01740.46730.033*
C180.18662 (16)−0.06113 (18)0.36216 (12)0.0228 (4)
H18A0.1118−0.08520.34570.034*
H18B0.2125−0.08950.41850.034*
H18C0.2288−0.10160.32540.034*
C28−0.17841 (16)1.28882 (19)0.10451 (13)0.0251 (5)
H28A−0.10301.31230.11500.038*
H28B−0.21611.33850.14040.038*
H28C−0.20901.30680.04720.038*
C29−0.38687 (16)1.1613 (2)0.06029 (12)0.0250 (5)
H29A−0.44961.10600.05330.037*
H29B−0.37411.18880.00650.037*
H29C−0.39891.23620.09280.037*
C6−0.28135 (14)0.67505 (18)0.17675 (11)0.0175 (4)
H6A−0.34990.71440.18290.021*
H6B−0.26450.60780.21900.021*
C30.29247 (14)0.56624 (17)0.35368 (11)0.0167 (4)
H3A0.27680.64330.31920.020*
H3B0.36110.53080.34430.020*
C40.30192 (15)0.60307 (19)0.44332 (11)0.0210 (4)
H4A0.23700.64970.45090.025*
H4B0.30670.52460.47700.025*
C50.39858 (16)0.6861 (2)0.47298 (12)0.0248 (4)
H5A0.46340.63750.47030.037*
H5B0.39860.71240.52970.037*
H5C0.39610.76180.43810.037*
C7−0.29199 (15)0.61516 (19)0.09218 (12)0.0222 (4)
H7A−0.30020.68330.05020.027*
H7B−0.22650.56690.08840.027*
C8−0.38697 (17)0.5262 (2)0.07528 (14)0.0312 (5)
H8A−0.38380.46570.12070.047*
H8B−0.38580.47930.02440.047*
H8C−0.45270.57610.06990.047*
U11U22U33U12U13U23
N230.0164 (8)0.0184 (8)0.0205 (8)0.0018 (6)0.0026 (6)0.0001 (6)
N130.0171 (8)0.0177 (8)0.0194 (8)0.0012 (6)0.0008 (6)0.0012 (6)
C130.0158 (9)0.0196 (10)0.0134 (8)0.0000 (7)0.0030 (7)−0.0004 (7)
N110.0164 (8)0.0155 (8)0.0169 (7)−0.0006 (6)0.0017 (6)−0.0001 (6)
N210.0160 (8)0.0153 (8)0.0179 (7)0.0006 (6)0.0028 (6)0.0006 (6)
C160.0191 (9)0.0193 (10)0.0150 (8)0.0041 (7)0.0023 (7)0.0000 (7)
C240.0178 (9)0.0186 (10)0.0207 (9)−0.0016 (7)0.0053 (7)−0.0018 (7)
C110.0188 (9)0.0137 (9)0.0138 (8)−0.0003 (7)0.0035 (7)−0.0004 (7)
C210.0200 (9)0.0172 (9)0.0131 (8)0.0006 (7)0.0027 (7)−0.0020 (7)
C260.0204 (10)0.0193 (10)0.0163 (9)0.0032 (8)0.0032 (7)−0.0013 (7)
C170.0153 (9)0.0203 (10)0.0184 (9)−0.0006 (7)0.0012 (7)−0.0006 (7)
C230.0175 (9)0.0195 (10)0.0144 (8)0.0020 (7)0.0038 (7)−0.0012 (7)
C150.0226 (10)0.0161 (9)0.0137 (8)−0.0021 (7)0.0028 (7)0.0005 (7)
C140.0171 (9)0.0190 (10)0.0173 (9)−0.0043 (7)0.0025 (7)−0.0022 (7)
C250.0247 (10)0.0178 (10)0.0160 (9)0.0014 (8)0.0070 (7)0.0002 (7)
C120.0160 (9)0.0184 (9)0.0144 (8)−0.0002 (7)0.0015 (7)−0.0003 (7)
C220.0169 (9)0.0181 (9)0.0149 (8)0.0013 (7)0.0025 (7)−0.0014 (7)
C270.0173 (9)0.0203 (10)0.0160 (9)−0.0011 (7)0.0016 (7)−0.0022 (7)
C20.0196 (10)0.0186 (10)0.0183 (9)−0.0011 (7)0.0056 (7)−0.0003 (7)
C10.0200 (10)0.0158 (9)0.0179 (9)0.0002 (7)0.0041 (7)−0.0003 (7)
C190.0214 (10)0.0190 (10)0.0244 (10)0.0032 (8)0.0004 (8)0.0024 (8)
C180.0263 (10)0.0168 (10)0.0242 (10)−0.0014 (8)0.0014 (8)0.0001 (8)
C280.0267 (11)0.0204 (11)0.0284 (10)0.0008 (8)0.0056 (8)0.0039 (8)
C290.0247 (11)0.0237 (11)0.0252 (10)0.0037 (8)0.0010 (8)0.0033 (8)
C60.0154 (9)0.0172 (9)0.0198 (9)−0.0013 (7)0.0029 (7)0.0016 (7)
C30.0144 (9)0.0140 (9)0.0216 (9)−0.0023 (7)0.0030 (7)0.0014 (7)
C40.0226 (10)0.0190 (10)0.0221 (10)−0.0033 (8)0.0056 (8)−0.0007 (8)
C50.0255 (10)0.0245 (11)0.0236 (10)−0.0039 (9)0.0022 (8)−0.0044 (8)
C70.0245 (10)0.0189 (10)0.0226 (10)0.0014 (8)0.0028 (8)−0.0011 (8)
C80.0253 (11)0.0297 (12)0.0370 (12)0.0001 (9)0.0013 (9)−0.0121 (10)
N23—C221.327 (2)C2—H20.9500
N23—C231.385 (2)C1—H10.9500
N13—C121.324 (2)C19—H19A0.9800
N13—C131.384 (2)C19—H19B0.9800
C13—C111.398 (2)C19—H19C0.9800
C13—C141.403 (3)C18—H18A0.9800
N11—C111.379 (2)C18—H18B0.9800
N11—C121.381 (2)C18—H18C0.9800
N11—C31.465 (2)C28—H28A0.9800
N21—C211.377 (2)C28—H28B0.9800
N21—C221.381 (2)C28—H28C0.9800
N21—C61.460 (2)C29—H29A0.9800
C16—C171.384 (3)C29—H29B0.9800
C16—C151.428 (3)C29—H29C0.9800
C16—C191.512 (3)C6—C71.521 (3)
C24—C251.383 (3)C6—H6A0.9900
C24—C231.403 (3)C6—H6B0.9900
C24—H240.9500C3—C41.521 (3)
C11—C171.397 (3)C3—H3A0.9900
C21—C271.397 (3)C3—H3B0.9900
C21—C231.399 (3)C4—C51.519 (3)
C26—C271.385 (3)C4—H4A0.9900
C26—C251.428 (3)C4—H4B0.9900
C26—C291.508 (3)C5—H5A0.9800
C17—H170.9500C5—H5B0.9800
C15—C141.381 (3)C5—H5C0.9800
C15—C181.512 (3)C7—C81.517 (3)
C14—H140.9500C7—H7A0.9900
C25—C281.511 (3)C7—H7B0.9900
C12—C11.454 (3)C8—H8A0.9800
C22—C21.456 (3)C8—H8B0.9800
C27—H270.9500C8—H8C0.9800
C2—C11.342 (3)
C22—N23—C23104.73 (15)H19A—C19—H19B109.5
C12—N13—C13104.98 (15)C16—C19—H19C109.5
N13—C13—C11110.28 (16)H19A—C19—H19C109.5
N13—C13—C14130.83 (17)H19B—C19—H19C109.5
C11—C13—C14118.90 (17)C15—C18—H18A109.5
C11—N11—C12106.44 (15)C15—C18—H18B109.5
C11—N11—C3123.67 (15)H18A—C18—H18B109.5
C12—N11—C3129.41 (15)C15—C18—H18C109.5
C21—N21—C22106.56 (15)H18A—C18—H18C109.5
C21—N21—C6124.01 (15)H18B—C18—H18C109.5
C22—N21—C6128.73 (15)C25—C28—H28A109.5
C17—C16—C15120.30 (17)C25—C28—H28B109.5
C17—C16—C19119.60 (17)H28A—C28—H28B109.5
C15—C16—C19120.09 (17)C25—C28—H28C109.5
C25—C24—C23119.38 (17)H28A—C28—H28C109.5
C25—C24—H24120.3H28B—C28—H28C109.5
C23—C24—H24120.3C26—C29—H29A109.5
N11—C11—C17131.66 (17)C26—C29—H29B109.5
N11—C11—C13105.69 (16)H29A—C29—H29B109.5
C17—C11—C13122.65 (17)C26—C29—H29C109.5
N21—C21—C27131.78 (17)H29A—C29—H29C109.5
N21—C21—C23105.66 (15)H29B—C29—H29C109.5
C27—C21—C23122.53 (17)N21—C6—C7111.30 (15)
C27—C26—C25120.02 (17)N21—C6—H6A109.4
C27—C26—C29119.42 (17)C7—C6—H6A109.4
C25—C26—C29120.55 (17)N21—C6—H6B109.4
C16—C17—C11117.96 (17)C7—C6—H6B109.4
C16—C17—H17121.0H6A—C6—H6B108.0
C11—C17—H17121.0N11—C3—C4111.38 (14)
N23—C23—C21110.38 (16)N11—C3—H3A109.4
N23—C23—C24130.64 (17)C4—C3—H3A109.4
C21—C23—C24118.97 (17)N11—C3—H3B109.4
C14—C15—C16120.66 (17)C4—C3—H3B109.4
C14—C15—C18119.97 (17)H3A—C3—H3B108.0
C16—C15—C18119.34 (17)C5—C4—C3112.34 (16)
C15—C14—C13119.53 (17)C5—C4—H4A109.1
C15—C14—H14120.2C3—C4—H4A109.1
C13—C14—H14120.2C5—C4—H4B109.1
C24—C25—C26120.87 (17)C3—C4—H4B109.1
C24—C25—C28119.06 (17)H4A—C4—H4B107.9
C26—C25—C28120.01 (17)C4—C5—H5A109.5
N13—C12—N11112.60 (16)C4—C5—H5B109.5
N13—C12—C1125.38 (16)H5A—C5—H5B109.5
N11—C12—C1121.99 (16)C4—C5—H5C109.5
N23—C22—N21112.63 (16)H5A—C5—H5C109.5
N23—C22—C2125.90 (16)H5B—C5—H5C109.5
N21—C22—C2121.45 (16)C8—C7—C6111.16 (16)
C26—C27—C21118.16 (17)C8—C7—H7A109.4
C26—C27—H27120.9C6—C7—H7A109.4
C21—C27—H27120.9C8—C7—H7B109.4
C1—C2—C22123.34 (18)C6—C7—H7B109.4
C1—C2—H2118.3H7A—C7—H7B108.0
C22—C2—H2118.3C7—C8—H8A109.5
C2—C1—C12122.13 (18)C7—C8—H8B109.5
C2—C1—H1118.9H8A—C8—H8B109.5
C12—C1—H1118.9C7—C8—H8C109.5
C16—C19—H19A109.5H8A—C8—H8C109.5
C16—C19—H19B109.5H8B—C8—H8C109.5
C12—N13—C13—C11−0.16 (19)C23—C24—C25—C26−1.2 (3)
C12—N13—C13—C14−179.65 (18)C23—C24—C25—C28175.89 (17)
C12—N11—C11—C17−179.41 (18)C27—C26—C25—C242.7 (3)
C3—N11—C11—C17−6.7 (3)C29—C26—C25—C24−176.39 (17)
C12—N11—C11—C130.71 (18)C27—C26—C25—C28−174.33 (17)
C3—N11—C11—C13173.39 (15)C29—C26—C25—C286.6 (3)
N13—C13—C11—N11−0.36 (19)C13—N13—C12—N110.6 (2)
C14—C13—C11—N11179.20 (15)C13—N13—C12—C1178.64 (17)
N13—C13—C11—C17179.75 (16)C11—N11—C12—N13−0.9 (2)
C14—C13—C11—C17−0.7 (3)C3—N11—C12—N13−172.99 (16)
C22—N21—C21—C27176.43 (18)C11—N11—C12—C1−178.96 (16)
C6—N21—C21—C275.3 (3)C3—N11—C12—C18.9 (3)
C22—N21—C21—C23−1.54 (18)C23—N23—C22—N21−1.3 (2)
C6—N21—C21—C23−172.65 (15)C23—N23—C22—C2176.97 (16)
C15—C16—C17—C110.4 (3)C21—N21—C22—N231.9 (2)
C19—C16—C17—C11−178.72 (16)C6—N21—C22—N23172.42 (16)
N11—C11—C17—C16−179.49 (18)C21—N21—C22—C2−176.52 (16)
C13—C11—C17—C160.4 (3)C6—N21—C22—C2−6.0 (3)
C22—N23—C23—C210.30 (19)C25—C26—C27—C21−1.9 (3)
C22—N23—C23—C24−178.94 (18)C29—C26—C27—C21177.25 (16)
N21—C21—C23—N230.80 (19)N21—C21—C27—C26−178.11 (18)
C27—C21—C23—N23−177.40 (15)C23—C21—C27—C26−0.4 (3)
N21—C21—C23—C24−179.86 (15)N23—C22—C2—C15.1 (3)
C27—C21—C23—C241.9 (3)N21—C22—C2—C1−176.72 (17)
C25—C24—C23—N23178.11 (17)C22—C2—C1—C12−176.52 (16)
C25—C24—C23—C21−1.1 (3)N13—C12—C1—C20.9 (3)
C17—C16—C15—C14−0.8 (3)N11—C12—C1—C2178.73 (16)
C19—C16—C15—C14178.29 (16)C21—N21—C6—C783.2 (2)
C17—C16—C15—C18177.44 (17)C22—N21—C6—C7−85.9 (2)
C19—C16—C15—C18−3.5 (2)C11—N11—C3—C4−81.9 (2)
C16—C15—C14—C130.5 (3)C12—N11—C3—C489.0 (2)
C18—C15—C14—C13−177.76 (16)N11—C3—C4—C5171.72 (15)
N13—C13—C14—C15179.71 (17)N21—C6—C7—C8−173.22 (16)
C11—C13—C14—C150.3 (2)
  7 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

4.  Three structures containing (E)-1,2-bis(benzimidazol-2-yl)ethene groups.

Authors:  Robert T Stibrany; Harvey J Schugar; Joseph A Potenza
Journal:  Acta Crystallogr C       Date:  2005-05-13       Impact factor: 1.172

5.  An alternating copolymer containing trigonal planar homocoordinated copper(I) ions: catena-poly[[[bis[mu-(E)-1,2-bis(1-ethyl-1H-benzimidazol-2-yl)ethene-kappa2N3:N3']dicopper(I)]-mu-(E)-1,2-bis(1-ethyl-1H-benzimidazol-2-yl)ethene-kappa2N3:N3'] bis(perchlorate) acetonitrile disolvate].

Authors:  Robert T Stibrany; Joseph A Potenza
Journal:  Acta Crystallogr C       Date:  2008-04-19       Impact factor: 1.172

6.  A geometrically constraining bis(benzimidazole) ligand and its nearly tetrahedral complexes with Fe(II) and Mn(II).

Authors:  Robert T Stibrany; Maxim V Lobanov; Harvey J Schugar; Joseph A Potenza
Journal:  Inorg Chem       Date:  2004-02-23       Impact factor: 5.165

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

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