Literature DB >> 21580347

4-[(2,4-Dihydroxy-benzyl-idene)ammonio]benzene-sulfonate trihydrate.

Chin Sing Yeap1, Madhukar Hemamalini, Hoong-Kun Fun.   

Abstract

The title Schiff base compound, C(13)H(11)NO(5)S·3H(2)O, formed from sulfanilic acid and 2,4-dihydroxy-benzaldehyde, crystallized out as a zwitterion with the N atom protonated. The asymmetric unit consists of one 4-[(2,4-dihydroxy-benzyl-idene)ammonio]benzene-sulfonate and three water mol-ecules. The zwitterion exists in an E configuration with respect to the central C=N double bond. The two benzene rings of the mol-ecule are oriented at a dihedral angle of 27.33 (8)°. An intra-molecular N-H⋯O hydrogen bond stabilizes the mol-ecular structure. In the crystal, the zwitterions are linked into chains along [101] by inter-molecular O-H⋯O and N-H⋯O hydrogen bonds. The three water mol-ecules link these chains into a three-dimensional framework by additional inter-molecular O-H⋯O hydrogen bonds. A π⋯π inter-action [3.5485 (9) Å] further stabilizes the crystal structure.

Entities:  

Year:  2010        PMID: 21580347      PMCID: PMC2983714          DOI: 10.1107/S1600536810004526

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For Schiff bases and their applications, see: Singh et al. (1975 ▶); Elmali et al. (1999 ▶); Patel et al. (1999 ▶). For details of sulfanilic acid, see: Rae & Maslen (1962 ▶); Banu & Golzar Hossain (2006 ▶); Hempel et al. (1999 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C13H11NO5S·3H2O M = 347.34 Triclinic, a = 7.7855 (1) Å b = 9.0820 (1) Å c = 11.8526 (2) Å α = 70.022 (1)° β = 79.271 (1)° γ = 76.141 (1)° V = 759.70 (2) Å3 Z = 2 Mo Kα radiation μ = 0.26 mm−1 T = 100 K 0.36 × 0.16 × 0.08 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.914, T max = 0.980 19799 measured reflections 5420 independent reflections 4177 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.147 S = 1.05 5420 reflections 220 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.61 e Å−3 Δρmin = −0.60 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810004526/sj2719sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810004526/sj2719Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H11NO5S·3H2OZ = 2
Mr = 347.34F(000) = 364
Triclinic, P1Dx = 1.518 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.7855 (1) ÅCell parameters from 7701 reflections
b = 9.0820 (1) Åθ = 2.6–32.1°
c = 11.8526 (2) ŵ = 0.26 mm1
α = 70.022 (1)°T = 100 K
β = 79.271 (1)°Block, yellow
γ = 76.141 (1)°0.36 × 0.16 × 0.08 mm
V = 759.70 (2) Å3
Bruker SMART APEXII CCD area-detector diffractometer5420 independent reflections
Radiation source: fine-focus sealed tube4177 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 32.4°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −11→11
Tmin = 0.914, Tmax = 0.980k = −13→13
19799 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.147H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.070P)2 + 0.4045P] where P = (Fo2 + 2Fc2)/3
5420 reflections(Δ/σ)max = 0.001
220 parametersΔρmax = 0.61 e Å3
0 restraintsΔρmin = −0.60 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.71640 (6)0.60676 (5)1.18660 (4)0.02504 (12)
O10.33982 (17)0.77778 (14)0.52286 (11)0.0226 (2)
O20.00861 (17)1.21132 (17)0.24684 (11)0.0256 (3)
O30.89905 (19)0.52191 (18)1.16735 (13)0.0371 (3)
O40.7119 (3)0.75067 (16)1.21434 (16)0.0530 (5)
O50.60457 (18)0.50241 (15)1.27306 (10)0.0267 (3)
N10.41704 (17)0.82152 (16)0.71713 (11)0.0170 (2)
C10.2641 (2)0.93133 (18)0.48282 (13)0.0170 (3)
C20.1775 (2)0.99664 (19)0.37933 (13)0.0190 (3)
H2A0.17280.93310.33330.023*
C30.0980 (2)1.15723 (19)0.34488 (13)0.0195 (3)
C40.1103 (2)1.25788 (19)0.40959 (14)0.0207 (3)
H4A0.05931.36580.38430.025*
C50.1987 (2)1.19458 (18)0.51051 (14)0.0188 (3)
H5A0.20901.26090.55280.023*
C60.2748 (2)1.02971 (17)0.55143 (13)0.0162 (3)
C70.3521 (2)0.97063 (18)0.66134 (13)0.0171 (3)
H7A0.35721.04540.69750.021*
C80.4854 (2)0.76888 (17)0.83072 (13)0.0169 (3)
C90.4177 (2)0.85045 (19)0.91434 (14)0.0212 (3)
H9A0.32460.93790.89790.025*
C100.4905 (2)0.79988 (19)1.02271 (14)0.0219 (3)
H10A0.44660.85371.07930.026*
C110.6291 (2)0.66864 (18)1.04650 (14)0.0197 (3)
C120.6933 (2)0.58417 (18)0.96441 (14)0.0203 (3)
H12A0.78470.49540.98170.024*
C130.6196 (2)0.63345 (18)0.85627 (14)0.0188 (3)
H13A0.65950.57650.80140.023*
O1W0.1128 (3)0.7226 (3)0.22066 (18)0.0639 (6)
H1W10.02990.68320.20440.096*
H2W10.07540.81890.18360.096*
O2W0.0858 (3)1.0446 (3)0.0769 (2)0.0815 (7)
H1W20.19290.99940.06280.122*
H2W20.04241.11700.12240.122*
O3W0.3001 (2)0.59375 (18)0.41308 (14)0.0368 (3)
H1W30.41800.55580.37960.055*
H2W30.22540.63480.36040.055*
H1N10.415 (3)0.747 (3)0.689 (2)0.041 (7)*
H1O10.327 (4)0.719 (4)0.478 (3)0.057 (8)*
H1O2−0.027 (3)1.305 (3)0.236 (2)0.036 (7)*
U11U22U33U12U13U23
S10.0369 (2)0.01588 (18)0.0241 (2)−0.00608 (15)−0.01801 (17)−0.00021 (14)
O10.0310 (6)0.0164 (5)0.0212 (5)−0.0008 (4)−0.0084 (5)−0.0063 (4)
O20.0257 (6)0.0297 (7)0.0188 (5)−0.0058 (5)−0.0101 (5)−0.0001 (5)
O30.0291 (7)0.0386 (8)0.0338 (7)−0.0045 (6)−0.0170 (6)0.0066 (6)
O40.0943 (14)0.0183 (6)0.0590 (10)−0.0066 (7)−0.0542 (10)−0.0072 (6)
O50.0367 (7)0.0239 (6)0.0173 (5)−0.0029 (5)−0.0064 (5)−0.0037 (4)
N10.0192 (6)0.0167 (6)0.0146 (5)−0.0028 (5)−0.0048 (4)−0.0031 (5)
C10.0172 (6)0.0175 (6)0.0165 (6)−0.0047 (5)−0.0019 (5)−0.0047 (5)
C20.0198 (7)0.0228 (7)0.0158 (6)−0.0070 (5)−0.0033 (5)−0.0051 (5)
C30.0176 (7)0.0241 (7)0.0145 (6)−0.0066 (5)−0.0037 (5)−0.0004 (5)
C40.0208 (7)0.0186 (7)0.0195 (7)−0.0035 (5)−0.0043 (6)−0.0008 (5)
C50.0219 (7)0.0161 (6)0.0175 (6)−0.0034 (5)−0.0042 (5)−0.0033 (5)
C60.0177 (6)0.0159 (6)0.0145 (6)−0.0032 (5)−0.0035 (5)−0.0031 (5)
C70.0193 (7)0.0165 (6)0.0152 (6)−0.0035 (5)−0.0047 (5)−0.0031 (5)
C80.0174 (6)0.0165 (6)0.0150 (6)−0.0039 (5)−0.0044 (5)−0.0012 (5)
C90.0247 (7)0.0184 (7)0.0182 (7)0.0005 (6)−0.0065 (6)−0.0039 (5)
C100.0288 (8)0.0176 (7)0.0183 (7)−0.0018 (6)−0.0067 (6)−0.0038 (5)
C110.0234 (7)0.0158 (6)0.0194 (7)−0.0068 (5)−0.0082 (6)0.0004 (5)
C120.0192 (7)0.0170 (7)0.0211 (7)−0.0025 (5)−0.0063 (5)−0.0002 (5)
C130.0195 (7)0.0176 (6)0.0178 (6)−0.0031 (5)−0.0025 (5)−0.0038 (5)
O1W0.0496 (11)0.1022 (17)0.0610 (12)−0.0363 (11)−0.0095 (9)−0.0358 (12)
O2W0.0746 (15)0.120 (2)0.0831 (16)−0.0358 (15)0.0051 (12)−0.0697 (16)
O3W0.0402 (8)0.0364 (7)0.0420 (8)−0.0097 (6)0.0007 (6)−0.0238 (6)
S1—O41.4441 (14)C5—H5A0.9300
S1—O51.4512 (14)C6—C71.417 (2)
S1—O31.4636 (15)C7—H7A0.9300
S1—C111.7706 (16)C8—C91.389 (2)
O1—C11.3325 (18)C8—C131.394 (2)
O1—H1O10.90 (3)C9—C101.388 (2)
O2—C31.3500 (18)C9—H9A0.9300
O2—H1O20.80 (3)C10—C111.390 (2)
N1—C71.3083 (19)C10—H10A0.9300
N1—C81.4247 (19)C11—C121.389 (2)
N1—H1N10.85 (3)C12—C131.390 (2)
C1—C21.389 (2)C12—H12A0.9300
C1—C61.422 (2)C13—H13A0.9300
C2—C31.390 (2)O1W—H1W10.8863
C2—H2A0.9300O1W—H2W10.8403
C3—C41.408 (2)O2W—H1W20.8500
C4—C51.372 (2)O2W—H2W20.9519
C4—H4A0.9300O3W—H1W30.9617
C5—C61.419 (2)O3W—H2W30.8594
O4—S1—O5113.78 (10)C7—C6—C1123.35 (13)
O4—S1—O3111.65 (11)C5—C6—C1118.67 (13)
O5—S1—O3111.87 (8)N1—C7—C6126.60 (14)
O4—S1—C11106.23 (8)N1—C7—H7A116.7
O5—S1—C11106.54 (8)C6—C7—H7A116.7
O3—S1—C11106.16 (8)C9—C8—C13121.03 (14)
C1—O1—H1O1114.3 (19)C9—C8—N1120.33 (13)
C3—O2—H1O2106.3 (18)C13—C8—N1118.64 (13)
C7—N1—C8123.83 (13)C10—C9—C8119.21 (14)
C7—N1—H1N1121.2 (17)C10—C9—H9A120.4
C8—N1—H1N1114.9 (17)C8—C9—H9A120.4
O1—C1—C2123.11 (14)C9—C10—C11119.89 (15)
O1—C1—C6116.94 (13)C9—C10—H10A120.1
C2—C1—C6119.94 (14)C11—C10—H10A120.1
C1—C2—C3119.77 (14)C12—C11—C10120.89 (14)
C1—C2—H2A120.1C12—C11—S1120.66 (12)
C3—C2—H2A120.1C10—C11—S1118.41 (12)
O2—C3—C2116.77 (15)C11—C12—C13119.41 (14)
O2—C3—C4121.90 (15)C11—C12—H12A120.3
C2—C3—C4121.33 (14)C13—C12—H12A120.3
C5—C4—C3119.07 (14)C12—C13—C8119.48 (14)
C5—C4—H4A120.5C12—C13—H13A120.3
C3—C4—H4A120.5C8—C13—H13A120.3
C4—C5—C6121.14 (14)H1W1—O1W—H2W197.0
C4—C5—H5A119.4H1W2—O2W—H2W2127.8
C6—C5—H5A119.4H1W3—O3W—H2W3113.2
C7—C6—C5117.94 (13)
O1—C1—C2—C3178.43 (14)C7—N1—C8—C13−150.63 (15)
C6—C1—C2—C3−1.5 (2)C13—C8—C9—C102.8 (2)
C1—C2—C3—O2−176.86 (14)N1—C8—C9—C10−177.92 (15)
C1—C2—C3—C43.1 (2)C8—C9—C10—C11−0.2 (2)
O2—C3—C4—C5178.14 (14)C9—C10—C11—C12−1.7 (3)
C2—C3—C4—C5−1.8 (2)C9—C10—C11—S1−179.29 (13)
C3—C4—C5—C6−1.1 (2)O4—S1—C11—C12146.08 (15)
C4—C5—C6—C7−175.27 (15)O5—S1—C11—C12−92.28 (15)
C4—C5—C6—C12.5 (2)O3—S1—C11—C1227.10 (16)
O1—C1—C6—C7−3.5 (2)O4—S1—C11—C10−36.33 (17)
C2—C1—C6—C7176.45 (14)O5—S1—C11—C1085.31 (14)
O1—C1—C6—C5178.82 (14)O3—S1—C11—C10−155.30 (14)
C2—C1—C6—C5−1.2 (2)C10—C11—C12—C131.1 (2)
C8—N1—C7—C6−176.86 (14)S1—C11—C12—C13178.61 (12)
C5—C6—C7—N1174.98 (15)C11—C12—C13—C81.5 (2)
C1—C6—C7—N1−2.7 (3)C9—C8—C13—C12−3.4 (2)
C7—N1—C8—C930.1 (2)N1—C8—C13—C12177.29 (14)
D—H···AD—HH···AD···AD—H···A
O1W—H1W1···O3i0.892.173.020 (3)161
O1W—H1W1···O4i0.892.393.083 (3)135
O1W—H2W1···O2W0.842.022.817 (4)158
O2W—H2W2···O20.951.892.812 (3)161
O3W—H1W3···O5ii0.961.832.756 (2)161
O3W—H2W3···O1W0.861.862.701 (3)166
N1—H1N1···O10.86 (3)2.07 (2)2.6601 (18)126 (2)
N1—H1N1···O5iii0.86 (3)2.19 (3)2.948 (2)148 (2)
O1—H1O1···O3W0.90 (3)1.64 (4)2.543 (2)173 (4)
O2—H1O2···O3iv0.80 (3)1.85 (3)2.627 (2)164 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W1⋯O3i0.892.173.020 (3)161
O1W—H1W1⋯O4i0.892.393.083 (3)135
O1W—H2W1⋯O2W0.842.022.817 (4)158
O2W—H2W2⋯O20.951.892.812 (3)161
O3W—H1W3⋯O5ii0.961.832.756 (2)161
O3W—H2W3⋯O1W0.861.862.701 (3)166
N1—H1N1⋯O10.86 (3)2.07 (2)2.6601 (18)126 (2)
N1—H1N1⋯O5iii0.86 (3)2.19 (3)2.948 (2)148 (2)
O1—H1O1⋯O3W0.90 (3)1.64 (4)2.543 (2)173 (4)
O2—H1O2⋯O3iv0.80 (3)1.85 (3)2.627 (2)164 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  A Schiff base formed from sulfanilic acid and dimethylformamide.

Authors:  A Hempel; N Camerman; D Mastropaolo; A Camerman
Journal:  Acta Crystallogr C       Date:  1999-04-15       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  1 in total

1.  (E)-4-[4-(Diethyl-amino)-benzyl-idene-ammonio]-benzene-sulfonate.

Authors:  Pumsak Ruanwas; Suchada Chantrapromma; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-20
  1 in total

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