Literature DB >> 21580324

1,5-Bis[(E)-1-(2-hydroxyphenyl)ethyl-idene]thiocarbonohydrazide mono-hydrate.

Md Abu Affan, Dayang N A Chee, Fasihuddin B Ahmad, Edward R T Tiekink.   

Abstract

In the title compound, C(17)H(18)N(4)O(2)S·H(2)O, the n class="Chemical">thio-urea derivative is almost planar, with an r.m.s. deviation for the non-H atoms of 0.057 Å. The hydroxyl groups lie to the same side of the mol-ecule as the thione S atom, a conformation that allows the formation of intra-molecular O-H⋯S and O-H⋯N hydrogen bonds. In the crystal structure, the thio-urea and water mol-ecules self-assemble into a two-dimensional array by a combination of O(water)-H⋯O(hydrox-yl), N-H⋯O(water) and O(water)-H⋯S hydrogen bonds and C-H⋯π inter-actions.

Entities:  

Year:  2010        PMID: 21580324      PMCID: PMC2983601          DOI: 10.1107/S1600536810004241

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background and recent studies of the biological activity of organotin compounds, see: Gielen & Tiekink (2005 ▶); Affan et al. (2009 ▶). For the structure of the ketone analogue of the title compound, see: Zukerman-Schpector et al. (2009 ▶).

Experimental

Crystal data

C17H18N4O2S·n class="Chemical">H2O M = 360.43 Monoclinic, a = 15.8654 (3) Å b = 7.3938 (1) Å c = 16.3697 (3) Å β = 115.922 (1)° V = 1727.06 (5) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 100 K 0.44 × 0.13 × 0.07 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.905, T max = 1 15464 measured reflections 3968 independent reflections 3136 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.102 S = 1.03 3968 reflections 246 parameters 7 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.35 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS86 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810004241/hb5327sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810004241/hb5327Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H18N4O2S·H2OF(000) = 760
Mr = 360.43Dx = 1.386 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4324 reflections
a = 15.8654 (3) Åθ = 2.9–27.4°
b = 7.3938 (1) ŵ = 0.21 mm1
c = 16.3697 (3) ÅT = 100 K
β = 115.922 (1)°Prism, colourless
V = 1727.06 (5) Å30.44 × 0.13 × 0.07 mm
Z = 4
Bruker SMART APEXII CCD diffractometer3968 independent reflections
Radiation source: sealed tube3136 reflections with I > 2σ(I)
graphiteRint = 0.033
φ and ω scansθmax = 27.5°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −20→20
Tmin = 0.905, Tmax = 1k = −9→8
15464 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0487P)2 + 0.7503P] where P = (Fo2 + 2Fc2)/3
3968 reflections(Δ/σ)max = 0.001
246 parametersΔρmax = 0.35 e Å3
7 restraintsΔρmin = −0.27 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.65089 (3)0.17338 (6)0.56929 (3)0.02002 (12)
O10.65341 (7)0.31213 (16)0.77557 (8)0.0213 (3)
H1O0.6224 (14)0.300 (3)0.7201 (15)0.032*
O20.70052 (8)−0.01110 (17)0.38996 (7)0.0225 (3)
H2O0.6629 (14)0.041 (3)0.4040 (14)0.034*
O30.82009 (8)0.13214 (18)0.86971 (9)0.0240 (3)
H3O0.7673 (15)0.180 (3)0.8392 (15)0.036*
H4O0.8143 (14)0.022 (3)0.8646 (15)0.036*
N10.47863 (9)0.29267 (19)0.53363 (9)0.0179 (3)
H1N0.4205 (13)0.313 (2)0.4972 (12)0.022*
N20.51214 (9)0.33207 (18)0.62387 (8)0.0166 (3)
N30.49527 (9)0.19563 (19)0.41174 (9)0.0179 (3)
H3N0.4365 (13)0.229 (3)0.3827 (13)0.021*
N40.54462 (9)0.12100 (18)0.36967 (9)0.0172 (3)
C10.53819 (10)0.2217 (2)0.50290 (11)0.0170 (3)
C20.45776 (10)0.4008 (2)0.65560 (10)0.0158 (3)
C30.35589 (10)0.4419 (2)0.59818 (11)0.0203 (3)
H3A0.34990.56030.56930.030*
H3B0.32270.44330.63650.030*
H3C0.32870.34880.55130.030*
C40.50342 (10)0.4407 (2)0.75353 (10)0.0163 (3)
C50.59838 (11)0.3942 (2)0.80910 (11)0.0175 (3)
C60.63916 (11)0.4332 (2)0.90125 (11)0.0206 (3)
H60.70240.39970.93790.025*
C70.58878 (11)0.5202 (2)0.94020 (11)0.0225 (4)
H70.61750.54681.00330.027*
C80.49609 (11)0.5689 (2)0.88708 (11)0.0223 (4)
H80.46130.62950.91360.027*
C90.45484 (11)0.5287 (2)0.79543 (11)0.0191 (3)
H90.39130.56190.75980.023*
C100.50214 (11)0.0843 (2)0.28371 (10)0.0172 (3)
C110.39945 (11)0.1186 (2)0.22693 (11)0.0235 (4)
H11A0.36470.08690.26180.035*
H11B0.37710.04450.17180.035*
H11C0.38960.24680.21010.035*
C120.56124 (11)0.0036 (2)0.24484 (10)0.0178 (3)
C130.65610 (11)−0.0429 (2)0.29941 (11)0.0187 (3)
C140.70852 (11)−0.1286 (2)0.26121 (11)0.0227 (4)
H140.7713−0.16340.29900.027*
C150.67062 (12)−0.1635 (2)0.16938 (12)0.0242 (4)
H150.7073−0.22120.14400.029*
C160.57851 (12)−0.1140 (2)0.11390 (11)0.0247 (4)
H160.5523−0.13600.05040.030*
C170.52543 (12)−0.0331 (2)0.15140 (11)0.0217 (4)
H170.4624−0.00100.11280.026*
U11U22U33U12U13U23
S10.01439 (18)0.0259 (2)0.01724 (19)0.00368 (15)0.00456 (14)0.00086 (17)
O10.0168 (5)0.0242 (6)0.0187 (6)0.0036 (5)0.0039 (5)−0.0026 (5)
O20.0162 (5)0.0326 (7)0.0167 (6)0.0010 (5)0.0054 (5)−0.0034 (5)
O30.0144 (5)0.0226 (7)0.0283 (6)0.0009 (5)0.0031 (5)−0.0023 (6)
N10.0135 (6)0.0230 (8)0.0150 (6)0.0015 (5)0.0042 (5)−0.0006 (6)
N20.0165 (6)0.0166 (7)0.0148 (6)−0.0005 (5)0.0049 (5)0.0007 (5)
N30.0142 (6)0.0210 (7)0.0162 (6)0.0020 (5)0.0046 (5)−0.0002 (6)
N40.0170 (6)0.0167 (7)0.0176 (6)−0.0003 (5)0.0075 (5)0.0003 (5)
C10.0168 (7)0.0155 (8)0.0180 (8)−0.0017 (6)0.0069 (6)0.0014 (6)
C20.0152 (7)0.0135 (8)0.0181 (7)−0.0021 (6)0.0066 (6)0.0014 (6)
C30.0165 (7)0.0247 (9)0.0182 (8)−0.0006 (6)0.0062 (6)−0.0005 (7)
C40.0162 (7)0.0139 (8)0.0179 (7)−0.0031 (6)0.0066 (6)0.0008 (6)
C50.0175 (7)0.0130 (8)0.0212 (8)−0.0013 (6)0.0078 (6)0.0005 (6)
C60.0179 (7)0.0185 (9)0.0200 (8)−0.0027 (6)0.0032 (6)0.0014 (7)
C70.0253 (8)0.0226 (9)0.0177 (8)−0.0057 (7)0.0075 (7)−0.0023 (7)
C80.0247 (8)0.0211 (9)0.0243 (8)−0.0022 (7)0.0136 (7)−0.0031 (7)
C90.0167 (7)0.0194 (8)0.0209 (8)−0.0015 (6)0.0081 (6)0.0008 (7)
C100.0186 (7)0.0132 (8)0.0176 (7)−0.0033 (6)0.0058 (6)0.0015 (6)
C110.0193 (8)0.0236 (9)0.0226 (8)−0.0014 (6)0.0046 (7)0.0001 (7)
C120.0212 (8)0.0136 (8)0.0170 (7)−0.0025 (6)0.0069 (6)0.0014 (6)
C130.0206 (7)0.0181 (8)0.0172 (7)−0.0049 (6)0.0080 (6)0.0006 (6)
C140.0190 (8)0.0249 (9)0.0243 (8)−0.0027 (6)0.0096 (7)0.0006 (7)
C150.0319 (9)0.0202 (9)0.0263 (9)−0.0032 (7)0.0181 (7)−0.0024 (7)
C160.0360 (9)0.0202 (9)0.0169 (8)−0.0018 (7)0.0105 (7)−0.0019 (7)
C170.0248 (8)0.0168 (8)0.0186 (8)0.0003 (6)0.0050 (7)0.0008 (7)
S1—C11.6754 (15)C6—C71.380 (2)
O1—C51.3606 (19)C6—H60.9500
O1—H1O0.83 (2)C7—C81.389 (2)
O2—C131.3550 (19)C7—H70.9500
O2—H2O0.82 (2)C8—C91.382 (2)
O3—H3O0.84 (2)C8—H80.9500
O3—H4O0.82 (2)C9—H90.9500
N1—C11.355 (2)C10—C121.470 (2)
N1—N21.3649 (18)C10—C111.503 (2)
N1—H1N0.865 (18)C11—H11A0.9800
N2—C21.290 (2)C11—H11B0.9800
N3—C11.356 (2)C11—H11C0.9800
N3—N41.3650 (18)C12—C171.406 (2)
N3—H3N0.876 (18)C12—C131.416 (2)
N4—C101.2956 (19)C13—C141.392 (2)
C2—C41.472 (2)C14—C151.378 (2)
C2—C31.503 (2)C14—H140.9500
C3—H3A0.9800C15—C161.391 (2)
C3—H3B0.9800C15—H150.9500
C3—H3C0.9800C16—C171.377 (2)
C4—C91.396 (2)C16—H160.9500
C4—C51.420 (2)C17—H170.9500
C5—C61.387 (2)
C5—O1—H1O108.2 (14)C8—C7—H7120.0
C13—O2—H2O107.0 (14)C9—C8—C7119.54 (16)
H3O—O3—H4O109 (2)C9—C8—H8120.2
C1—N1—N2118.65 (13)C7—C8—H8120.2
C1—N1—H1N121.2 (12)C8—C9—C4122.18 (14)
N2—N1—H1N120.2 (12)C8—C9—H9118.9
C2—N2—N1120.48 (12)C4—C9—H9118.9
C1—N3—N4119.32 (13)N4—C10—C12115.31 (13)
C1—N3—H3N117.4 (12)N4—C10—C11123.03 (15)
N4—N3—H3N123.3 (12)C12—C10—C11121.65 (14)
C10—N4—N3119.45 (13)C10—C11—H11A109.5
N1—C1—N3111.55 (13)C10—C11—H11B109.5
N1—C1—S1124.15 (12)H11A—C11—H11B109.5
N3—C1—S1124.30 (12)C10—C11—H11C109.5
N2—C2—C4114.84 (13)H11A—C11—H11C109.5
N2—C2—C3123.59 (14)H11B—C11—H11C109.5
C4—C2—C3121.55 (14)C17—C12—C13116.86 (15)
C2—C3—H3A109.5C17—C12—C10121.22 (14)
C2—C3—H3B109.5C13—C12—C10121.91 (14)
H3A—C3—H3B109.5O2—C13—C14116.31 (14)
C2—C3—H3C109.5O2—C13—C12123.28 (15)
H3A—C3—H3C109.5C14—C13—C12120.40 (15)
H3B—C3—H3C109.5C15—C14—C13120.93 (15)
C9—C4—C5117.19 (14)C15—C14—H14119.5
C9—C4—C2120.92 (13)C13—C14—H14119.5
C5—C4—C2121.88 (14)C14—C15—C16119.74 (16)
O1—C5—C6117.06 (14)C14—C15—H15120.1
O1—C5—C4122.53 (14)C16—C15—H15120.1
C6—C5—C4120.40 (15)C17—C16—C15119.75 (15)
C7—C6—C5120.68 (15)C17—C16—H16120.1
C7—C6—H6119.7C15—C16—H16120.1
C5—C6—H6119.7C16—C17—C12122.27 (15)
C6—C7—C8120.00 (15)C16—C17—H17118.9
C6—C7—H7120.0C12—C17—H17118.9
C1—N1—N2—C2179.58 (14)C7—C8—C9—C4−0.4 (3)
C1—N3—N4—C10175.22 (15)C5—C4—C9—C8−0.4 (2)
N2—N1—C1—N3−178.03 (13)C2—C4—C9—C8−179.56 (15)
N2—N1—C1—S11.7 (2)N3—N4—C10—C12−179.77 (13)
N4—N3—C1—N1−178.53 (13)N3—N4—C10—C11−0.5 (2)
N4—N3—C1—S11.8 (2)N4—C10—C12—C17−176.26 (15)
N1—N2—C2—C4−178.58 (13)C11—C10—C12—C174.5 (2)
N1—N2—C2—C30.2 (2)N4—C10—C12—C134.6 (2)
N2—C2—C4—C9174.83 (15)C11—C10—C12—C13−174.62 (15)
C3—C2—C4—C9−4.0 (2)C17—C12—C13—O2178.25 (15)
N2—C2—C4—C5−4.3 (2)C10—C12—C13—O2−2.6 (2)
C3—C2—C4—C5176.85 (15)C17—C12—C13—C14−2.9 (2)
C9—C4—C5—O1−178.43 (14)C10—C12—C13—C14176.31 (15)
C2—C4—C5—O10.8 (2)O2—C13—C14—C15−178.53 (15)
C9—C4—C5—C61.0 (2)C12—C13—C14—C152.5 (3)
C2—C4—C5—C6−179.76 (15)C13—C14—C15—C16−0.5 (3)
O1—C5—C6—C7178.47 (15)C14—C15—C16—C17−1.0 (3)
C4—C5—C6—C7−1.0 (2)C15—C16—C17—C120.6 (3)
C5—C6—C7—C80.3 (3)C13—C12—C17—C161.4 (2)
C6—C7—C8—C90.4 (3)C10—C12—C17—C16−177.81 (15)
Cg1 is the centroid of the C4–C9 ring.
D—H···AD—HH···AD···AD—H···A
O1—H1O···N20.83 (2)1.79 (2)2.5191 (17)147 (2)
O1—H1O···S10.83 (2)2.86 (2)3.5126 (13)138 (2)
O2—H2O···N40.82 (2)1.81 (2)2.542 (2)148 (2)
O2—H2O···S10.82 (2)2.96 (2)3.6220 (15)139 (2)
O3—H3O···O10.84 (2)1.91 (2)2.7525 (18)174 (2)
O3—H4O···S1i0.82 (2)2.76 (2)3.5089 (14)154 (2)
N1—H1N···O3ii0.87 (2)2.04 (2)2.8169 (19)150 (2)
N3—H3N···O3ii0.88 (2)2.04 (2)2.854 (2)154 (2)
C11—H11C···Cg1iii0.982.613.4497 (17)144
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C4–C9 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O⋯N20.83 (2)1.79 (2)2.5191 (17)147 (2)
O1—H1O⋯S10.83 (2)2.86 (2)3.5126 (13)138 (2)
O2—H2O⋯N40.82 (2)1.81 (2)2.542 (2)148 (2)
O2—H2O⋯S10.82 (2)2.96 (2)3.6220 (15)139 (2)
O3—H3O⋯O10.84 (2)1.91 (2)2.7525 (18)174 (2)
O3—H4O⋯S1i0.82 (2)2.76 (2)3.5089 (14)154 (2)
N1—H1N⋯O3ii0.87 (2)2.04 (2)2.8169 (19)150 (2)
N3—H3N⋯O3ii0.88 (2)2.04 (2)2.854 (2)154 (2)
C11—H11CCg1iii0.982.613.4497 (17)144

Symmetry codes: (i) ; (ii) ; (iii) .

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