| Literature DB >> 21580324 |
Md Abu Affan, Dayang N A Chee, Fasihuddin B Ahmad, Edward R T Tiekink.
Abstract
In the title compound, C(17)H(18)N(4)O(2)S·H(2)O, the thio-urea derivative is almost planar, with an r.m.s. deviation for the non-H atoms of 0.057 Å. The hydroxyl groups lie to the same side of the mol-ecule as the thione S atom, a conformation that allows the formation of intra-molecular O-H⋯S and O-H⋯N hydrogen bonds. In the crystal structure, the thio-urea and water mol-ecules self-assemble into a two-dimensional array by a combination of O(water)-H⋯O(hydrox-yl), N-H⋯O(water) and O(water)-H⋯S hydrogen bonds and C-H⋯π inter-actions.Entities:
Year: 2010 PMID: 21580324 PMCID: PMC2983601 DOI: 10.1107/S1600536810004241
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C17H18N4O2S·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 4324 reflections |
| θ = 2.9–27.4° | |
| µ = 0.21 mm−1 | |
| β = 115.922 (1)° | Prism, colourless |
| 0.44 × 0.13 × 0.07 mm | |
| Bruker SMART APEXII CCD diffractometer | 3968 independent reflections |
| Radiation source: sealed tube | 3136 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.5°, θmin = 1.5° |
| Absorption correction: multi-scan ( | |
| 15464 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3968 reflections | (Δ/σ)max = 0.001 |
| 246 parameters | Δρmax = 0.35 e Å−3 |
| 7 restraints | Δρmin = −0.27 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.65089 (3) | 0.17338 (6) | 0.56929 (3) | 0.02002 (12) | |
| O1 | 0.65341 (7) | 0.31213 (16) | 0.77557 (8) | 0.0213 (3) | |
| H1O | 0.6224 (14) | 0.300 (3) | 0.7201 (15) | 0.032* | |
| O2 | 0.70052 (8) | −0.01110 (17) | 0.38996 (7) | 0.0225 (3) | |
| H2O | 0.6629 (14) | 0.041 (3) | 0.4040 (14) | 0.034* | |
| O3 | 0.82009 (8) | 0.13214 (18) | 0.86971 (9) | 0.0240 (3) | |
| H3O | 0.7673 (15) | 0.180 (3) | 0.8392 (15) | 0.036* | |
| H4O | 0.8143 (14) | 0.022 (3) | 0.8646 (15) | 0.036* | |
| N1 | 0.47863 (9) | 0.29267 (19) | 0.53363 (9) | 0.0179 (3) | |
| H1N | 0.4205 (13) | 0.313 (2) | 0.4972 (12) | 0.022* | |
| N2 | 0.51214 (9) | 0.33207 (18) | 0.62387 (8) | 0.0166 (3) | |
| N3 | 0.49527 (9) | 0.19563 (19) | 0.41174 (9) | 0.0179 (3) | |
| H3N | 0.4365 (13) | 0.229 (3) | 0.3827 (13) | 0.021* | |
| N4 | 0.54462 (9) | 0.12100 (18) | 0.36967 (9) | 0.0172 (3) | |
| C1 | 0.53819 (10) | 0.2217 (2) | 0.50290 (11) | 0.0170 (3) | |
| C2 | 0.45776 (10) | 0.4008 (2) | 0.65560 (10) | 0.0158 (3) | |
| C3 | 0.35589 (10) | 0.4419 (2) | 0.59818 (11) | 0.0203 (3) | |
| H3A | 0.3499 | 0.5603 | 0.5693 | 0.030* | |
| H3B | 0.3227 | 0.4433 | 0.6365 | 0.030* | |
| H3C | 0.3287 | 0.3488 | 0.5513 | 0.030* | |
| C4 | 0.50342 (10) | 0.4407 (2) | 0.75353 (10) | 0.0163 (3) | |
| C5 | 0.59838 (11) | 0.3942 (2) | 0.80910 (11) | 0.0175 (3) | |
| C6 | 0.63916 (11) | 0.4332 (2) | 0.90125 (11) | 0.0206 (3) | |
| H6 | 0.7024 | 0.3997 | 0.9379 | 0.025* | |
| C7 | 0.58878 (11) | 0.5202 (2) | 0.94020 (11) | 0.0225 (4) | |
| H7 | 0.6175 | 0.5468 | 1.0033 | 0.027* | |
| C8 | 0.49609 (11) | 0.5689 (2) | 0.88708 (11) | 0.0223 (4) | |
| H8 | 0.4613 | 0.6295 | 0.9136 | 0.027* | |
| C9 | 0.45484 (11) | 0.5287 (2) | 0.79543 (11) | 0.0191 (3) | |
| H9 | 0.3913 | 0.5619 | 0.7598 | 0.023* | |
| C10 | 0.50214 (11) | 0.0843 (2) | 0.28371 (10) | 0.0172 (3) | |
| C11 | 0.39945 (11) | 0.1186 (2) | 0.22693 (11) | 0.0235 (4) | |
| H11A | 0.3647 | 0.0869 | 0.2618 | 0.035* | |
| H11B | 0.3771 | 0.0445 | 0.1718 | 0.035* | |
| H11C | 0.3896 | 0.2468 | 0.2101 | 0.035* | |
| C12 | 0.56124 (11) | 0.0036 (2) | 0.24484 (10) | 0.0178 (3) | |
| C13 | 0.65610 (11) | −0.0429 (2) | 0.29941 (11) | 0.0187 (3) | |
| C14 | 0.70852 (11) | −0.1286 (2) | 0.26121 (11) | 0.0227 (4) | |
| H14 | 0.7713 | −0.1634 | 0.2990 | 0.027* | |
| C15 | 0.67062 (12) | −0.1635 (2) | 0.16938 (12) | 0.0242 (4) | |
| H15 | 0.7073 | −0.2212 | 0.1440 | 0.029* | |
| C16 | 0.57851 (12) | −0.1140 (2) | 0.11390 (11) | 0.0247 (4) | |
| H16 | 0.5523 | −0.1360 | 0.0504 | 0.030* | |
| C17 | 0.52543 (12) | −0.0331 (2) | 0.15140 (11) | 0.0217 (4) | |
| H17 | 0.4624 | −0.0010 | 0.1128 | 0.026* |
| S1 | 0.01439 (18) | 0.0259 (2) | 0.01724 (19) | 0.00368 (15) | 0.00456 (14) | 0.00086 (17) |
| O1 | 0.0168 (5) | 0.0242 (6) | 0.0187 (6) | 0.0036 (5) | 0.0039 (5) | −0.0026 (5) |
| O2 | 0.0162 (5) | 0.0326 (7) | 0.0167 (6) | 0.0010 (5) | 0.0054 (5) | −0.0034 (5) |
| O3 | 0.0144 (5) | 0.0226 (7) | 0.0283 (6) | 0.0009 (5) | 0.0031 (5) | −0.0023 (6) |
| N1 | 0.0135 (6) | 0.0230 (8) | 0.0150 (6) | 0.0015 (5) | 0.0042 (5) | −0.0006 (6) |
| N2 | 0.0165 (6) | 0.0166 (7) | 0.0148 (6) | −0.0005 (5) | 0.0049 (5) | 0.0007 (5) |
| N3 | 0.0142 (6) | 0.0210 (7) | 0.0162 (6) | 0.0020 (5) | 0.0046 (5) | −0.0002 (6) |
| N4 | 0.0170 (6) | 0.0167 (7) | 0.0176 (6) | −0.0003 (5) | 0.0075 (5) | 0.0003 (5) |
| C1 | 0.0168 (7) | 0.0155 (8) | 0.0180 (8) | −0.0017 (6) | 0.0069 (6) | 0.0014 (6) |
| C2 | 0.0152 (7) | 0.0135 (8) | 0.0181 (7) | −0.0021 (6) | 0.0066 (6) | 0.0014 (6) |
| C3 | 0.0165 (7) | 0.0247 (9) | 0.0182 (8) | −0.0006 (6) | 0.0062 (6) | −0.0005 (7) |
| C4 | 0.0162 (7) | 0.0139 (8) | 0.0179 (7) | −0.0031 (6) | 0.0066 (6) | 0.0008 (6) |
| C5 | 0.0175 (7) | 0.0130 (8) | 0.0212 (8) | −0.0013 (6) | 0.0078 (6) | 0.0005 (6) |
| C6 | 0.0179 (7) | 0.0185 (9) | 0.0200 (8) | −0.0027 (6) | 0.0032 (6) | 0.0014 (7) |
| C7 | 0.0253 (8) | 0.0226 (9) | 0.0177 (8) | −0.0057 (7) | 0.0075 (7) | −0.0023 (7) |
| C8 | 0.0247 (8) | 0.0211 (9) | 0.0243 (8) | −0.0022 (7) | 0.0136 (7) | −0.0031 (7) |
| C9 | 0.0167 (7) | 0.0194 (8) | 0.0209 (8) | −0.0015 (6) | 0.0081 (6) | 0.0008 (7) |
| C10 | 0.0186 (7) | 0.0132 (8) | 0.0176 (7) | −0.0033 (6) | 0.0058 (6) | 0.0015 (6) |
| C11 | 0.0193 (8) | 0.0236 (9) | 0.0226 (8) | −0.0014 (6) | 0.0046 (7) | 0.0001 (7) |
| C12 | 0.0212 (8) | 0.0136 (8) | 0.0170 (7) | −0.0025 (6) | 0.0069 (6) | 0.0014 (6) |
| C13 | 0.0206 (7) | 0.0181 (8) | 0.0172 (7) | −0.0049 (6) | 0.0080 (6) | 0.0006 (6) |
| C14 | 0.0190 (8) | 0.0249 (9) | 0.0243 (8) | −0.0027 (6) | 0.0096 (7) | 0.0006 (7) |
| C15 | 0.0319 (9) | 0.0202 (9) | 0.0263 (9) | −0.0032 (7) | 0.0181 (7) | −0.0024 (7) |
| C16 | 0.0360 (9) | 0.0202 (9) | 0.0169 (8) | −0.0018 (7) | 0.0105 (7) | −0.0019 (7) |
| C17 | 0.0248 (8) | 0.0168 (8) | 0.0186 (8) | 0.0003 (6) | 0.0050 (7) | 0.0008 (7) |
| S1—C1 | 1.6754 (15) | C6—C7 | 1.380 (2) |
| O1—C5 | 1.3606 (19) | C6—H6 | 0.9500 |
| O1—H1O | 0.83 (2) | C7—C8 | 1.389 (2) |
| O2—C13 | 1.3550 (19) | C7—H7 | 0.9500 |
| O2—H2O | 0.82 (2) | C8—C9 | 1.382 (2) |
| O3—H3O | 0.84 (2) | C8—H8 | 0.9500 |
| O3—H4O | 0.82 (2) | C9—H9 | 0.9500 |
| N1—C1 | 1.355 (2) | C10—C12 | 1.470 (2) |
| N1—N2 | 1.3649 (18) | C10—C11 | 1.503 (2) |
| N1—H1N | 0.865 (18) | C11—H11A | 0.9800 |
| N2—C2 | 1.290 (2) | C11—H11B | 0.9800 |
| N3—C1 | 1.356 (2) | C11—H11C | 0.9800 |
| N3—N4 | 1.3650 (18) | C12—C17 | 1.406 (2) |
| N3—H3N | 0.876 (18) | C12—C13 | 1.416 (2) |
| N4—C10 | 1.2956 (19) | C13—C14 | 1.392 (2) |
| C2—C4 | 1.472 (2) | C14—C15 | 1.378 (2) |
| C2—C3 | 1.503 (2) | C14—H14 | 0.9500 |
| C3—H3A | 0.9800 | C15—C16 | 1.391 (2) |
| C3—H3B | 0.9800 | C15—H15 | 0.9500 |
| C3—H3C | 0.9800 | C16—C17 | 1.377 (2) |
| C4—C9 | 1.396 (2) | C16—H16 | 0.9500 |
| C4—C5 | 1.420 (2) | C17—H17 | 0.9500 |
| C5—C6 | 1.387 (2) | ||
| C5—O1—H1O | 108.2 (14) | C8—C7—H7 | 120.0 |
| C13—O2—H2O | 107.0 (14) | C9—C8—C7 | 119.54 (16) |
| H3O—O3—H4O | 109 (2) | C9—C8—H8 | 120.2 |
| C1—N1—N2 | 118.65 (13) | C7—C8—H8 | 120.2 |
| C1—N1—H1N | 121.2 (12) | C8—C9—C4 | 122.18 (14) |
| N2—N1—H1N | 120.2 (12) | C8—C9—H9 | 118.9 |
| C2—N2—N1 | 120.48 (12) | C4—C9—H9 | 118.9 |
| C1—N3—N4 | 119.32 (13) | N4—C10—C12 | 115.31 (13) |
| C1—N3—H3N | 117.4 (12) | N4—C10—C11 | 123.03 (15) |
| N4—N3—H3N | 123.3 (12) | C12—C10—C11 | 121.65 (14) |
| C10—N4—N3 | 119.45 (13) | C10—C11—H11A | 109.5 |
| N1—C1—N3 | 111.55 (13) | C10—C11—H11B | 109.5 |
| N1—C1—S1 | 124.15 (12) | H11A—C11—H11B | 109.5 |
| N3—C1—S1 | 124.30 (12) | C10—C11—H11C | 109.5 |
| N2—C2—C4 | 114.84 (13) | H11A—C11—H11C | 109.5 |
| N2—C2—C3 | 123.59 (14) | H11B—C11—H11C | 109.5 |
| C4—C2—C3 | 121.55 (14) | C17—C12—C13 | 116.86 (15) |
| C2—C3—H3A | 109.5 | C17—C12—C10 | 121.22 (14) |
| C2—C3—H3B | 109.5 | C13—C12—C10 | 121.91 (14) |
| H3A—C3—H3B | 109.5 | O2—C13—C14 | 116.31 (14) |
| C2—C3—H3C | 109.5 | O2—C13—C12 | 123.28 (15) |
| H3A—C3—H3C | 109.5 | C14—C13—C12 | 120.40 (15) |
| H3B—C3—H3C | 109.5 | C15—C14—C13 | 120.93 (15) |
| C9—C4—C5 | 117.19 (14) | C15—C14—H14 | 119.5 |
| C9—C4—C2 | 120.92 (13) | C13—C14—H14 | 119.5 |
| C5—C4—C2 | 121.88 (14) | C14—C15—C16 | 119.74 (16) |
| O1—C5—C6 | 117.06 (14) | C14—C15—H15 | 120.1 |
| O1—C5—C4 | 122.53 (14) | C16—C15—H15 | 120.1 |
| C6—C5—C4 | 120.40 (15) | C17—C16—C15 | 119.75 (15) |
| C7—C6—C5 | 120.68 (15) | C17—C16—H16 | 120.1 |
| C7—C6—H6 | 119.7 | C15—C16—H16 | 120.1 |
| C5—C6—H6 | 119.7 | C16—C17—C12 | 122.27 (15) |
| C6—C7—C8 | 120.00 (15) | C16—C17—H17 | 118.9 |
| C6—C7—H7 | 120.0 | C12—C17—H17 | 118.9 |
| C1—N1—N2—C2 | 179.58 (14) | C7—C8—C9—C4 | −0.4 (3) |
| C1—N3—N4—C10 | 175.22 (15) | C5—C4—C9—C8 | −0.4 (2) |
| N2—N1—C1—N3 | −178.03 (13) | C2—C4—C9—C8 | −179.56 (15) |
| N2—N1—C1—S1 | 1.7 (2) | N3—N4—C10—C12 | −179.77 (13) |
| N4—N3—C1—N1 | −178.53 (13) | N3—N4—C10—C11 | −0.5 (2) |
| N4—N3—C1—S1 | 1.8 (2) | N4—C10—C12—C17 | −176.26 (15) |
| N1—N2—C2—C4 | −178.58 (13) | C11—C10—C12—C17 | 4.5 (2) |
| N1—N2—C2—C3 | 0.2 (2) | N4—C10—C12—C13 | 4.6 (2) |
| N2—C2—C4—C9 | 174.83 (15) | C11—C10—C12—C13 | −174.62 (15) |
| C3—C2—C4—C9 | −4.0 (2) | C17—C12—C13—O2 | 178.25 (15) |
| N2—C2—C4—C5 | −4.3 (2) | C10—C12—C13—O2 | −2.6 (2) |
| C3—C2—C4—C5 | 176.85 (15) | C17—C12—C13—C14 | −2.9 (2) |
| C9—C4—C5—O1 | −178.43 (14) | C10—C12—C13—C14 | 176.31 (15) |
| C2—C4—C5—O1 | 0.8 (2) | O2—C13—C14—C15 | −178.53 (15) |
| C9—C4—C5—C6 | 1.0 (2) | C12—C13—C14—C15 | 2.5 (3) |
| C2—C4—C5—C6 | −179.76 (15) | C13—C14—C15—C16 | −0.5 (3) |
| O1—C5—C6—C7 | 178.47 (15) | C14—C15—C16—C17 | −1.0 (3) |
| C4—C5—C6—C7 | −1.0 (2) | C15—C16—C17—C12 | 0.6 (3) |
| C5—C6—C7—C8 | 0.3 (3) | C13—C12—C17—C16 | 1.4 (2) |
| C6—C7—C8—C9 | 0.4 (3) | C10—C12—C17—C16 | −177.81 (15) |
| Cg1 is the centroid of the C4–C9 ring. |
| H··· | ||||
| O1—H1O···N2 | 0.83 (2) | 1.79 (2) | 2.5191 (17) | 147 (2) |
| O1—H1O···S1 | 0.83 (2) | 2.86 (2) | 3.5126 (13) | 138 (2) |
| O2—H2O···N4 | 0.82 (2) | 1.81 (2) | 2.542 (2) | 148 (2) |
| O2—H2O···S1 | 0.82 (2) | 2.96 (2) | 3.6220 (15) | 139 (2) |
| O3—H3O···O1 | 0.84 (2) | 1.91 (2) | 2.7525 (18) | 174 (2) |
| O3—H4O···S1i | 0.82 (2) | 2.76 (2) | 3.5089 (14) | 154 (2) |
| N1—H1N···O3ii | 0.87 (2) | 2.04 (2) | 2.8169 (19) | 150 (2) |
| N3—H3N···O3ii | 0.88 (2) | 2.04 (2) | 2.854 (2) | 154 (2) |
| C11—H11C···Cg1iii | 0.98 | 2.61 | 3.4497 (17) | 144 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C4–C9 ring.
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.83 (2) | 1.79 (2) | 2.5191 (17) | 147 (2) |
| O1—H1 | 0.83 (2) | 2.86 (2) | 3.5126 (13) | 138 (2) |
| O2—H2 | 0.82 (2) | 1.81 (2) | 2.542 (2) | 148 (2) |
| O2—H2 | 0.82 (2) | 2.96 (2) | 3.6220 (15) | 139 (2) |
| O3—H3 | 0.84 (2) | 1.91 (2) | 2.7525 (18) | 174 (2) |
| O3—H4 | 0.82 (2) | 2.76 (2) | 3.5089 (14) | 154 (2) |
| N1—H1 | 0.87 (2) | 2.04 (2) | 2.8169 (19) | 150 (2) |
| N3—H3 | 0.88 (2) | 2.04 (2) | 2.854 (2) | 154 (2) |
| C11—H11 | 0.98 | 2.61 | 3.4497 (17) | 144 |
Symmetry codes: (i) ; (ii) ; (iii) .