Literature DB >> 21580322

9-Furfuryl-idene-2,3-dimethyl-6,7,8,9-tetrahydro-4H--thieno[2',3':4,5]pyrimidino[1,2-a]pyridin-4-one.

Khurshed A Bozorov1, Burkhon Zh Elmuradov, Rasul Ya Okmanov, Bakhodir Tashkhodjaev, Khusnutdin M Shakhidoyatov.   

Abstract

The title compound, C(17)H(16)N(2)O(2)S, was obtained by condensation of 2,3-dimethyl-thieno[2',3':4,5]pyrimidino[1,2-a]pyridin-4-one with furfural in the presence of sodium hydroxide. One of the methyl-ene groups of the tetra-hydro-pyrido ring is disordered over two positions in a 0.87 (1):0.13 (1) ratio. The thieno[2,3-d]pyrimidin-4-one unit and the furan ring are both planar (r.m.s. deviation = 0.535 Å), and coplanar with each other, forming a dihedral angle of 5.4 (1)°. Four weak inter-molecular hydrogen bonds (C-H⋯O and C-H⋯N) are observed in the structure, which join mol-ecules into a network parallel to (101).

Entities:  

Year:  2010        PMID: 21580322      PMCID: PMC2983712          DOI: 10.1107/S1600536810004101

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of thieno[2,3-d]pyrimidin-4-ones and their derivatives, see: Melik-Ogandzhanyan et al. (1985 ▶); Csukonyi et al. (1986 ▶); Shvedov et al. (1975 ▶); Shakhidoyatov (1983 ▶); Gevald et al. (1966 ▶); Kapustina et al. (1992 ▶); Peet et al. (1986 ▶); Shodiyev et al. (1993 ▶); Bozorov et al. (2009 ▶). For the physiological activity of thieno[2,3-d]pyrimidin-4-ones and their derivatives, see: Kapustina et al. (1992 ▶); Blaskiewich et al. (1975 ▶); Wähäla et al. (2005 ▶); Lilienkampf et al. (2007 ▶); Han et al. (2007 ▶); Moore et al. (2006 ▶). For weak hydrogen bonds in alkaloids, see: Rajnikant et al. (2005 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C17H16N2O2S M = 312.39 Monoclinic, a = 16.569 (3) Å b = 11.034 (2) Å c = 8.2775 (17) Å β = 93.12 (3)° V = 1511.1 (5) Å3 Z = 4 Cu Kα radiation μ = 1.98 mm−1 T = 295 K 0.70 × 0.25 × 0.25 mm

Data collection

Stoe Stadi-4 four-circle diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.749, T max = 0.994 2398 measured reflections 2252 independent reflections 1875 reflections with I > 2σ(I) θmax = 60.0° 3 standard reflections every 60 min intensity decay: 8.8%

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.126 S = 1.06 2252 reflections 212 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.20 e Å−3 Data collection: STADI4 (Stoe & Cie, 1997 ▶); cell refinement: STADI4; data reduction: X-RED (Stoe & Cie, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810004101/zl2270sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810004101/zl2270Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H16N2O2SF(000) = 656
Mr = 312.39Dx = 1.373 Mg m3
Monoclinic, P21/cMelting point: 448(3) K
Hall symbol: -P 2ybcCu Kα radiation, λ = 1.54184 Å
a = 16.569 (3) ÅCell parameters from 14 reflections
b = 11.034 (2) Åθ = 10–20°
c = 8.2775 (17) ŵ = 1.98 mm1
β = 93.12 (3)°T = 295 K
V = 1511.1 (5) Å3Prizmatic, yellow
Z = 40.70 × 0.25 × 0.25 mm
Stoe Stadi-4 four-circle diffractometer1875 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.000
graphiteθmax = 60.0°, θmin = 2.7°
Scan width (ω) = 1.56 – 1.80, scan ratio 2θ:ω = 1.00 I(Net) and sigma(I) calculated according to Blessing (1987)h = 0→18
Absorption correction: ψ scan (North et al., 1968)k = −12→0
Tmin = 0.749, Tmax = 0.994l = −9→9
2398 measured reflections3 standard reflections every 60 min
2252 independent reflections intensity decay: 8.8%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046H-atom parameters constrained
wR(F2) = 0.126w = 1/[σ2(Fo2) + (0.0607P)2 + 0.8817P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.004
2252 reflectionsΔρmax = 0.21 e Å3
212 parametersΔρmin = −0.20 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0065 (6)
Experimental. ψ Scan Reflections used µ * R = 0.00 H K L, θ, χ, Imin/Imax: 2 0 0, 21.5, 84.7, 0.699
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.90729 (13)0.21420 (19)−0.1624 (3)0.0835 (8)
S70.77689 (4)0.60019 (6)−0.01745 (10)0.0595 (3)
N10.71466 (12)0.37806 (19)0.0356 (3)0.0467 (6)
C20.72119 (14)0.2591 (2)0.0249 (3)0.0418 (6)
N30.78599 (12)0.20424 (19)−0.0432 (3)0.0458 (5)
C40.85116 (15)0.2697 (3)−0.1063 (3)0.0518 (7)
C4A0.84293 (15)0.3988 (2)−0.0951 (3)0.0449 (6)
C50.89660 (15)0.4932 (2)−0.1467 (3)0.0487 (6)
C5A0.97383 (17)0.4694 (3)−0.2303 (4)0.0679 (9)
H5AA0.99860.5451−0.25620.102*
H5AB0.96180.4245−0.32800.102*
H5AC1.01020.4235−0.15990.102*
C60.86857 (16)0.6048 (3)−0.1123 (3)0.0531 (7)
C6A0.90635 (19)0.7268 (3)−0.1409 (4)0.0709 (9)
H6AA0.95400.7164−0.20050.106*
H6AB0.92070.7645−0.03880.106*
H6AC0.86840.7772−0.20160.106*
C7A0.77579 (14)0.4433 (2)−0.0239 (3)0.0450 (6)
C80.65649 (15)0.1844 (2)0.0904 (3)0.0421 (6)
C90.65812 (17)0.0487 (2)0.0699 (3)0.0538 (7)
H9A0.60360.01940.04550.065*0.867 (11)
H9B0.67820.01140.17030.065*0.867 (11)
H9C0.63730.01090.16480.065*0.133 (11)
H9D0.62290.0265−0.02280.065*0.133 (11)
C100.7120 (3)0.0122 (3)−0.0664 (6)0.0553 (13)0.867 (11)
H10A0.7188−0.0751−0.06570.066*0.867 (11)
H10B0.68570.0348−0.16960.066*0.867 (11)
C10A0.7417 (14)0.0010 (18)0.046 (5)0.059 (9)0.133 (11)
H10C0.7690−0.00870.15200.071*0.133 (11)
H10D0.7364−0.0790−0.00170.071*0.133 (11)
C110.79243 (19)0.0704 (3)−0.0502 (4)0.0619 (8)
H11A0.82350.0477−0.14140.074*0.867 (11)
H11B0.82110.04140.04760.074*0.867 (11)
H11C0.78200.0459−0.16190.074*0.133 (11)
H11D0.84790.0487−0.02000.074*0.133 (11)
C120.59817 (14)0.2425 (2)0.1664 (3)0.0462 (6)
H12A0.60220.32650.16780.055*
O1'0.48028 (12)0.28051 (16)0.3048 (3)0.0661 (6)
C2'0.53057 (15)0.1931 (2)0.2458 (3)0.0453 (6)
C3'0.50203 (17)0.0833 (2)0.2865 (3)0.0532 (7)
H3'A0.52470.00880.26250.064*
C4'0.43150 (17)0.1016 (3)0.3722 (4)0.0581 (8)
H4'A0.39890.04210.41440.070*
C5'0.42112 (18)0.2205 (3)0.3803 (4)0.0677 (9)
H5'A0.37900.25800.43090.081*
U11U22U33U12U13U23
O10.0666 (14)0.0566 (13)0.132 (2)0.0106 (11)0.0528 (14)−0.0037 (13)
S70.0568 (5)0.0387 (4)0.0861 (6)−0.0057 (3)0.0330 (4)−0.0040 (3)
N10.0458 (12)0.0368 (12)0.0594 (13)−0.0038 (9)0.0206 (10)−0.0035 (9)
C20.0426 (13)0.0371 (14)0.0465 (13)0.0011 (11)0.0084 (11)−0.0033 (11)
N30.0448 (12)0.0374 (12)0.0562 (13)0.0023 (9)0.0121 (10)−0.0027 (9)
C40.0450 (15)0.0491 (16)0.0630 (16)0.0050 (12)0.0176 (13)−0.0004 (13)
C4A0.0391 (13)0.0477 (15)0.0489 (14)0.0007 (11)0.0107 (11)−0.0012 (11)
C50.0412 (14)0.0499 (16)0.0563 (15)−0.0021 (12)0.0144 (12)0.0009 (12)
C5A0.0466 (16)0.068 (2)0.092 (2)−0.0008 (15)0.0275 (15)0.0024 (17)
C60.0466 (15)0.0526 (16)0.0615 (16)−0.0084 (13)0.0175 (13)0.0020 (13)
C6A0.068 (2)0.0541 (18)0.094 (2)−0.0126 (15)0.0291 (17)0.0071 (16)
C7A0.0421 (13)0.0398 (14)0.0543 (15)−0.0018 (11)0.0129 (11)−0.0014 (11)
C80.0442 (14)0.0357 (13)0.0467 (14)−0.0040 (11)0.0061 (11)−0.0004 (10)
C90.0596 (17)0.0386 (15)0.0645 (17)−0.0044 (13)0.0155 (14)−0.0031 (12)
C100.065 (2)0.0360 (17)0.066 (3)0.0019 (16)0.010 (2)−0.0066 (16)
C10A0.048 (13)0.032 (11)0.10 (2)0.004 (9)0.008 (13)0.013 (12)
C110.0681 (19)0.0365 (14)0.083 (2)0.0089 (14)0.0169 (16)−0.0035 (14)
C120.0472 (14)0.0337 (13)0.0587 (15)−0.0056 (11)0.0115 (12)−0.0006 (11)
O1'0.0624 (12)0.0378 (10)0.1018 (15)−0.0008 (9)0.0407 (11)0.0043 (10)
C2'0.0444 (14)0.0357 (13)0.0567 (15)−0.0030 (11)0.0110 (12)−0.0011 (11)
C3'0.0576 (16)0.0346 (14)0.0692 (18)−0.0072 (12)0.0196 (14)−0.0015 (12)
C4'0.0539 (16)0.0467 (16)0.0760 (19)−0.0121 (13)0.0236 (14)0.0027 (13)
C5'0.0569 (17)0.0501 (18)0.100 (2)−0.0057 (14)0.0384 (17)0.0024 (16)
O1—C41.226 (3)C9—H9A0.9700
S7—C7A1.732 (3)C9—H9B0.9700
S7—C61.748 (3)C9—H9C0.9700
N1—C21.321 (3)C9—H9D0.9700
N1—C7A1.357 (3)C10—C111.478 (5)
C2—N31.379 (3)C10—H10A0.9700
C2—C81.479 (3)C10—H10B0.9700
N3—C41.422 (3)C10A—C111.41 (2)
N3—C111.482 (3)C10A—H10C0.9700
C4—C4A1.435 (4)C10A—H10D0.9700
C4A—C7A1.377 (3)C11—H11A0.9700
C4A—C51.449 (3)C11—H11B0.9700
C5—C61.352 (4)C11—H11C0.9700
C5—C5A1.510 (4)C11—H11D0.9700
C5A—H5AA0.9600C12—C2'1.437 (3)
C5A—H5AB0.9600C12—H12A0.9300
C5A—H5AC0.9600O1'—C5'1.363 (3)
C6—C6A1.509 (4)O1'—C2'1.381 (3)
C6A—H6AA0.9600C2'—C3'1.349 (3)
C6A—H6AB0.9600C3'—C4'1.414 (4)
C6A—H6AC0.9600C3'—H3'A0.9300
C8—C121.344 (3)C4'—C5'1.325 (4)
C8—C91.506 (3)C4'—H4'A0.9300
C9—C10A1.51 (2)C5'—H5'A0.9300
C9—C101.531 (4)
C7A—S7—C691.33 (12)C8—C9—H9C109.1
C2—N1—C7A116.0 (2)C10A—C9—H9D109.1
N1—C2—N3122.1 (2)C8—C9—H9D109.1
N1—C2—C8117.8 (2)H9C—C9—H9D107.8
N3—C2—C8120.1 (2)C11—C10—C9112.2 (3)
C2—N3—C4123.4 (2)C11—C10—H10A109.2
C2—N3—C11120.8 (2)C9—C10—H10A109.2
C4—N3—C11115.7 (2)C11—C10—H10B109.2
O1—C4—N3119.5 (3)C9—C10—H10B109.2
O1—C4—C4A126.7 (2)H10A—C10—H10B107.9
N3—C4—C4A113.8 (2)C11—C10A—C9117.6 (17)
C7A—C4A—C4117.6 (2)C11—C10A—H10C107.9
C7A—C4A—C5113.2 (2)C9—C10A—H10C107.9
C4—C4A—C5129.2 (2)C11—C10A—H10D107.9
C6—C5—C4A111.6 (2)C9—C10A—H10D107.9
C6—C5—C5A124.3 (2)H10C—C10A—H10D107.2
C4A—C5—C5A124.0 (2)C10A—C11—N3118.1 (9)
C5—C5A—H5AA109.5C10—C11—N3111.7 (3)
C5—C5A—H5AB109.5C10A—C11—H11A130.9
H5AA—C5A—H5AB109.5C10—C11—H11A109.3
C5—C5A—H5AC109.5N3—C11—H11A109.3
H5AA—C5A—H5AC109.5C10—C11—H11B109.3
H5AB—C5A—H5AC109.5N3—C11—H11B109.3
C5—C6—C6A129.0 (2)H11A—C11—H11B107.9
C5—C6—S7112.7 (2)C10A—C11—H11C107.8
C6A—C6—S7118.3 (2)N3—C11—H11C107.8
C6—C6A—H6AA109.5H11B—C11—H11C139.2
C6—C6A—H6AB109.5C10A—C11—H11D107.8
H6AA—C6A—H6AB109.5C10—C11—H11D138.9
C6—C6A—H6AC109.5N3—C11—H11D107.8
H6AA—C6A—H6AC109.5H11C—C11—H11D107.1
H6AB—C6A—H6AC109.5C8—C12—C2'129.2 (2)
N1—C7A—C4A127.0 (2)C8—C12—H12A115.4
N1—C7A—S7121.74 (18)C2'—C12—H12A115.4
C4A—C7A—S7111.21 (19)C5'—O1'—C2'106.6 (2)
C12—C8—C2117.4 (2)C3'—C2'—O1'108.2 (2)
C12—C8—C9123.0 (2)C3'—C2'—C12138.3 (2)
C2—C8—C9119.6 (2)O1'—C2'—C12113.4 (2)
C10A—C9—C8112.6 (8)C2'—C3'—C4'107.9 (2)
C8—C9—C10111.1 (2)C2'—C3'—H3'A126.0
C10A—C9—H9A135.2C4'—C3'—H3'A126.0
C8—C9—H9A109.4C5'—C4'—C3'106.2 (2)
C10—C9—H9A109.4C5'—C4'—H4'A126.9
C8—C9—H9B109.4C3'—C4'—H4'A126.9
C10—C9—H9B109.4C4'—C5'—O1'111.1 (2)
H9A—C9—H9B108.0C4'—C5'—H5'A124.5
C10A—C9—H9C109.1O1'—C5'—H5'A124.5
D—H···AD—HH···AD···AD—H···A
C3'—H3'A···O1'i0.932.583.442 (3)154
C4'—H4'A···N1i0.932.663.568 (3)166
C5A—H5AA···O1ii0.962.553.486 (4)166
C6A—H6AA···O1ii0.962.623.571 (4)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3′—H3′A⋯O1′i0.932.583.442 (3)154
C4′—H4′A⋯N1i0.932.663.568 (3)166
C5A—H5AA⋯O1ii0.962.553.486 (4)166
C6A—H6AA⋯O1ii0.962.623.571 (4)171

Symmetry codes: (i) ; (ii) .

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1.  2-Methyl-4-oxo-6,7,8,9-tetrahydro-thieno[2',3':4,5]pyrimidino-[1,2-a]pyridine-3-carboxylic acid.

Authors:  Burkhon Zh Elmuradov; Khurshed A Bozorov; Rasul Ya Okmanov; Bakhodir Tashkhodjaev; Khusnutdin M Shakhidoyatov
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-09
  1 in total

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