Literature DB >> 21580182

(E)-4-Methyl-2-{[tris(hydroxymethyl)methyl]iminiomethyl}phenolate.

Gonca Ozdemir Tarı, Hasan Tanak, Mustafa Macit, Ferda Erşahin, Samil Isık.   

Abstract

In the zwitterionic title compound, C(12)H(17)NO(4), an intra-molecular N-H⋯O hydrogen bond generates a six-membered ring, producing an S(6) ring. In the crystal structure, mol-ecules are linked by inter-molecular C-H⋯O and O-H⋯O inter-actions.

Entities:  

Year:  2009        PMID: 21580182      PMCID: PMC2980115          DOI: 10.1107/S1600536809051800

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the properties and uses of Schiff bases, see: Aydoğan et al. (2001 ▶); Barton & Ollis (1979 ▶); Layer (1963 ▶); Ingold (1969 ▶); Cohen et al. (1964 ▶); Ogawa & Harada (2003 ▶); Taggi et al. (2002 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For comparative bond lengths, see: Allen et al. (1987 ▶); Yüce et al. (2006 ▶).

Experimental

Crystal data

C12H17NO4 M = 239.27 Triclinic, a = 6.7501 (6) Å b = 8.5036 (8) Å c = 11.129 (1) Å α = 87.584 (8)° β = 77.192 (8)° γ = 79.215 (8)° V = 611.9 (1) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.80 × 0.48 × 0.21 mm

Data collection

STOE IPDS II diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.942, T max = 0.979 8321 measured reflections 2409 independent reflections 2001 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.105 S = 1.09 2409 reflections 160 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.22 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I. DOI: 10.1107/S1600536809051800/im2160sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809051800/im2160Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H17NO4Z = 2
Mr = 239.27F(000) = 256
Triclinic, P1Dx = 1.299 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.7501 (6) ÅCell parameters from 13032 reflections
b = 8.5036 (8) Åθ = 1.9–28.0°
c = 11.129 (1) ŵ = 0.10 mm1
α = 87.584 (8)°T = 296 K
β = 77.192 (8)°PRISM., yellow
γ = 79.215 (8)°0.80 × 0.48 × 0.21 mm
V = 611.9 (1) Å3
STOE IPDS II diffractometer2409 independent reflections
Radiation source: fine-focus sealed tube2001 reflections with I > 2σ(I)
graphiteRint = 0.022
Detector resolution: 6.67 pixels mm-1θmax = 26.0°, θmin = 1.9°
rotation method scansh = −8→8
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)k = −10→10
Tmin = 0.942, Tmax = 0.979l = −13→13
8321 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.105w = 1/[σ2(Fo2) + (0.0534P)2 + 0.0953P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
2409 reflectionsΔρmax = 0.25 e Å3
160 parametersΔρmin = −0.21 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.046 (8)
Experimental. 339 frames, detector distance = 100 mm
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2299 (2)0.70721 (15)0.73471 (12)0.0388 (3)
C20.2401 (3)0.6812 (2)0.60930 (15)0.0587 (4)
H20.13270.64400.58650.070*
C30.4045 (3)0.7094 (3)0.52063 (15)0.0667 (5)
H30.40620.68880.43900.080*
C40.5709 (3)0.7680 (2)0.54645 (14)0.0570 (4)
C50.5658 (2)0.79155 (18)0.66829 (13)0.0476 (4)
H50.67520.82840.68910.057*
C60.4002 (2)0.76175 (15)0.76301 (12)0.0377 (3)
C70.7462 (3)0.8029 (3)0.44497 (17)0.0820 (6)
H7A0.85090.83310.48040.123*
H7B0.69540.88870.39460.123*
H7C0.80400.70890.39520.123*
C80.4134 (2)0.78295 (15)0.88719 (12)0.0364 (3)
H80.52460.82440.90090.044*
C90.27900 (19)0.76614 (14)1.11183 (11)0.0333 (3)
C100.4917 (2)0.77744 (17)1.13130 (13)0.0422 (3)
H10A0.53510.87251.09100.051*
H10B0.48690.78531.21860.051*
C110.1251 (2)0.91827 (15)1.15916 (13)0.0409 (3)
H11A−0.01060.91141.14650.049*
H11B0.11480.93071.24670.049*
C120.2064 (2)0.61933 (16)1.17826 (13)0.0395 (3)
H12A0.30710.52381.15010.047*
H12B0.19340.62961.26630.047*
N10.28000 (16)0.74792 (12)0.98133 (9)0.0325 (3)
O10.07182 (14)0.68314 (10)0.82072 (9)0.0412 (3)
O20.63352 (16)0.64022 (13)1.08193 (13)0.0655 (4)
H140.74850.64601.09220.098*
O30.19503 (15)1.05030 (11)1.09428 (10)0.0510 (3)
H130.11391.13271.11900.077*
O40.01450 (14)0.60604 (11)1.15400 (9)0.0452 (3)
H4−0.02440.52731.18970.068*
H10.179 (3)0.7122 (19)0.9641 (14)0.047 (4)*
U11U22U33U12U13U23
C10.0392 (7)0.0321 (6)0.0448 (7)−0.0052 (5)−0.0094 (6)0.0000 (5)
C20.0602 (10)0.0732 (11)0.0495 (9)−0.0187 (8)−0.0198 (8)−0.0046 (8)
C30.0721 (12)0.0905 (13)0.0386 (8)−0.0158 (10)−0.0134 (8)−0.0033 (8)
C40.0544 (10)0.0684 (10)0.0420 (8)−0.0070 (8)−0.0013 (7)0.0030 (7)
C50.0414 (8)0.0553 (8)0.0445 (8)−0.0127 (6)−0.0033 (6)0.0017 (6)
C60.0381 (7)0.0357 (6)0.0382 (7)−0.0079 (5)−0.0045 (5)−0.0010 (5)
C70.0720 (13)0.1168 (18)0.0473 (10)−0.0174 (12)0.0065 (9)0.0066 (10)
C80.0331 (6)0.0340 (6)0.0426 (7)−0.0099 (5)−0.0056 (5)−0.0014 (5)
C90.0315 (6)0.0337 (6)0.0355 (6)−0.0097 (5)−0.0060 (5)0.0001 (5)
C100.0380 (7)0.0470 (7)0.0461 (7)−0.0147 (6)−0.0133 (6)0.0016 (6)
C110.0389 (7)0.0360 (7)0.0450 (7)−0.0114 (5)0.0017 (6)−0.0042 (5)
C120.0370 (7)0.0382 (7)0.0457 (7)−0.0126 (5)−0.0109 (6)0.0078 (5)
N10.0289 (5)0.0316 (5)0.0380 (6)−0.0087 (4)−0.0063 (4)−0.0013 (4)
O10.0373 (5)0.0354 (5)0.0522 (6)−0.0108 (4)−0.0086 (4)−0.0016 (4)
O20.0382 (6)0.0497 (6)0.1130 (10)−0.0030 (5)−0.0300 (6)−0.0023 (6)
O30.0417 (6)0.0313 (5)0.0726 (7)−0.0088 (4)0.0055 (5)−0.0010 (4)
O40.0361 (5)0.0378 (5)0.0659 (7)−0.0156 (4)−0.0140 (4)0.0094 (4)
C1—O11.3071 (16)C9—N11.4654 (16)
C1—C21.407 (2)C9—C101.5197 (17)
C1—C61.4174 (19)C9—C121.5282 (17)
C2—C31.363 (3)C9—C111.5305 (18)
C2—H20.9300C10—O21.4080 (19)
C3—C41.399 (3)C10—H10A0.9700
C3—H30.9300C10—H10B0.9700
C4—C51.371 (2)C11—O31.4085 (16)
C4—C71.508 (2)C11—H11A0.9700
C5—C61.4094 (19)C11—H11B0.9700
C5—H50.9300C12—O41.4060 (16)
C6—C81.4255 (18)C12—H12A0.9700
C7—H7A0.9600C12—H12B0.9700
C7—H7B0.9600N1—H10.858 (18)
C7—H7C0.9600O2—H140.8200
C8—N11.2856 (16)O3—H130.8200
C8—H80.9300O4—H40.8200
O1—C1—C2122.02 (13)C10—C9—C12110.25 (10)
O1—C1—C6121.62 (12)N1—C9—C11107.87 (10)
C2—C1—C6116.36 (13)C10—C9—C11109.93 (11)
C3—C2—C1121.25 (15)C12—C9—C11110.19 (11)
C3—C2—H2119.4O2—C10—C9109.24 (11)
C1—C2—H2119.4O2—C10—H10A109.8
C2—C3—C4123.19 (15)C9—C10—H10A109.8
C2—C3—H3118.4O2—C10—H10B109.8
C4—C3—H3118.4C9—C10—H10B109.8
C5—C4—C3116.52 (15)H10A—C10—H10B108.3
C5—C4—C7122.08 (16)O3—C11—C9108.51 (10)
C3—C4—C7121.40 (16)O3—C11—H11A110.0
C4—C5—C6122.10 (14)C9—C11—H11A110.0
C4—C5—H5118.9O3—C11—H11B110.0
C6—C5—H5118.9C9—C11—H11B110.0
C5—C6—C1120.53 (12)H11A—C11—H11B108.4
C5—C6—C8117.94 (12)O4—C12—C9109.49 (10)
C1—C6—C8121.50 (12)O4—C12—H12A109.8
C4—C7—H7A109.5C9—C12—H12A109.8
C4—C7—H7B109.5O4—C12—H12B109.8
H7A—C7—H7B109.5C9—C12—H12B109.8
C4—C7—H7C109.5H12A—C12—H12B108.2
H7A—C7—H7C109.5C8—N1—C9127.73 (11)
H7B—C7—H7C109.5C8—N1—H1114.8 (10)
N1—C8—C6123.60 (12)C9—N1—H1117.5 (10)
N1—C8—H8118.2C10—O2—H14109.5
C6—C8—H8118.2C11—O3—H13109.5
N1—C9—C10111.90 (10)C12—O4—H4109.5
N1—C9—C12106.62 (10)
O1—C1—C2—C3178.89 (16)C1—C6—C8—N13.4 (2)
C6—C1—C2—C3−0.9 (2)N1—C9—C10—O2−57.33 (14)
C1—C2—C3—C4−1.2 (3)C12—C9—C10—O261.16 (15)
C2—C3—C4—C52.2 (3)C11—C9—C10—O2−177.17 (11)
C2—C3—C4—C7−177.89 (19)N1—C9—C11—O3−62.87 (13)
C3—C4—C5—C6−1.3 (2)C10—C9—C11—O359.40 (14)
C7—C4—C5—C6178.83 (16)C12—C9—C11—O3−178.89 (10)
C4—C5—C6—C1−0.7 (2)N1—C9—C12—O4−55.27 (13)
C4—C5—C6—C8177.23 (13)C10—C9—C12—O4−176.94 (11)
O1—C1—C6—C5−178.02 (12)C11—C9—C12—O461.54 (14)
C2—C1—C6—C51.7 (2)C6—C8—N1—C9−179.57 (11)
O1—C1—C6—C84.15 (19)C10—C9—N1—C8−20.27 (17)
C2—C1—C6—C8−176.10 (13)C12—C9—N1—C8−140.89 (12)
C5—C6—C8—N1−174.53 (13)C11—C9—N1—C8100.77 (14)
D—H···AD—HH···AD···AD—H···A
O4—H4···O1i0.821.892.621 (1)148
O3—H13···O1ii0.821.862.679 (1)178
O2—H14···O4iii0.822.032.821 (1)163
C8—H8···O3iv0.932.353.272 (2)171
C10—H10A···O3iv0.972.583.379 (2)140
N1—H1···O10.86 (2)1.93 (2)2.638 (1)138 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4⋯O1i0.821.892.621 (1)148
O3—H13⋯O1ii0.821.862.679 (1)178
O2—H14⋯O4iii0.822.032.821 (1)163
C8—H8⋯O3iv0.932.353.272 (2)171
C10—H10A⋯O3iv0.972.583.379 (2)140
N1—H1⋯O10.86 (2)1.93 (2)2.638 (1)138 (1)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
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Authors:  Süheyla Yüce; Ciğdem Albayrak; Mustafa Odabaşoğlu; Orhan Büyükgüngör
Journal:  Acta Crystallogr C       Date:  2006-06-15       Impact factor: 1.172

3.  The development of the first catalyzed reaction of ketenes and imines: catalytic, asymmetric synthesis of beta-lactams.

Authors:  Andrew E Taggi; Ahmed M Hafez; Harald Wack; Brandon Young; Dana Ferraris; Thomas Lectka
Journal:  J Am Chem Soc       Date:  2002-06-12       Impact factor: 15.419

  3 in total

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