| Literature DB >> 21580182 |
Gonca Ozdemir Tarı, Hasan Tanak, Mustafa Macit, Ferda Erşahin, Samil Isık.
Abstract
In the zwitterionic title compound, C(12)H(17)NO(4), an intra-molecular N-H⋯O hydrogen bond generates a six-membered ring, producing an S(6) ring. In the crystal structure, mol-ecules are linked by inter-molecular C-H⋯O and O-H⋯O inter-actions.Entities:
Year: 2009 PMID: 21580182 PMCID: PMC2980115 DOI: 10.1107/S1600536809051800
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H17NO4 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 13032 reflections | |
| θ = 1.9–28.0° | |
| µ = 0.10 mm−1 | |
| α = 87.584 (8)° | |
| β = 77.192 (8)° | PRISM., yellow |
| γ = 79.215 (8)° | 0.80 × 0.48 × 0.21 mm |
| STOE IPDS II diffractometer | 2409 independent reflections |
| Radiation source: fine-focus sealed tube | 2001 reflections with |
| graphite | |
| Detector resolution: 6.67 pixels mm-1 | θmax = 26.0°, θmin = 1.9° |
| rotation method scans | |
| Absorption correction: integration ( | |
| 8321 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2409 reflections | Δρmax = 0.25 e Å−3 |
| 160 parameters | Δρmin = −0.21 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.046 (8) |
| Experimental. 339 frames, detector distance = 100 mm |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.2299 (2) | 0.70721 (15) | 0.73471 (12) | 0.0388 (3) | |
| C2 | 0.2401 (3) | 0.6812 (2) | 0.60930 (15) | 0.0587 (4) | |
| H2 | 0.1327 | 0.6440 | 0.5865 | 0.070* | |
| C3 | 0.4045 (3) | 0.7094 (3) | 0.52063 (15) | 0.0667 (5) | |
| H3 | 0.4062 | 0.6888 | 0.4390 | 0.080* | |
| C4 | 0.5709 (3) | 0.7680 (2) | 0.54645 (14) | 0.0570 (4) | |
| C5 | 0.5658 (2) | 0.79155 (18) | 0.66829 (13) | 0.0476 (4) | |
| H5 | 0.6752 | 0.8284 | 0.6891 | 0.057* | |
| C6 | 0.4002 (2) | 0.76175 (15) | 0.76301 (12) | 0.0377 (3) | |
| C7 | 0.7462 (3) | 0.8029 (3) | 0.44497 (17) | 0.0820 (6) | |
| H7A | 0.8509 | 0.8331 | 0.4804 | 0.123* | |
| H7B | 0.6954 | 0.8887 | 0.3946 | 0.123* | |
| H7C | 0.8040 | 0.7089 | 0.3952 | 0.123* | |
| C8 | 0.4134 (2) | 0.78295 (15) | 0.88719 (12) | 0.0364 (3) | |
| H8 | 0.5246 | 0.8244 | 0.9009 | 0.044* | |
| C9 | 0.27900 (19) | 0.76614 (14) | 1.11183 (11) | 0.0333 (3) | |
| C10 | 0.4917 (2) | 0.77744 (17) | 1.13130 (13) | 0.0422 (3) | |
| H10A | 0.5351 | 0.8725 | 1.0910 | 0.051* | |
| H10B | 0.4869 | 0.7853 | 1.2186 | 0.051* | |
| C11 | 0.1251 (2) | 0.91827 (15) | 1.15916 (13) | 0.0409 (3) | |
| H11A | −0.0106 | 0.9114 | 1.1465 | 0.049* | |
| H11B | 0.1148 | 0.9307 | 1.2467 | 0.049* | |
| C12 | 0.2064 (2) | 0.61933 (16) | 1.17826 (13) | 0.0395 (3) | |
| H12A | 0.3071 | 0.5238 | 1.1501 | 0.047* | |
| H12B | 0.1934 | 0.6296 | 1.2663 | 0.047* | |
| N1 | 0.28000 (16) | 0.74792 (12) | 0.98133 (9) | 0.0325 (3) | |
| O1 | 0.07182 (14) | 0.68314 (10) | 0.82072 (9) | 0.0412 (3) | |
| O2 | 0.63352 (16) | 0.64022 (13) | 1.08193 (13) | 0.0655 (4) | |
| H14 | 0.7485 | 0.6460 | 1.0922 | 0.098* | |
| O3 | 0.19503 (15) | 1.05030 (11) | 1.09428 (10) | 0.0510 (3) | |
| H13 | 0.1139 | 1.1327 | 1.1190 | 0.077* | |
| O4 | 0.01450 (14) | 0.60604 (11) | 1.15400 (9) | 0.0452 (3) | |
| H4 | −0.0244 | 0.5273 | 1.1897 | 0.068* | |
| H1 | 0.179 (3) | 0.7122 (19) | 0.9641 (14) | 0.047 (4)* |
| C1 | 0.0392 (7) | 0.0321 (6) | 0.0448 (7) | −0.0052 (5) | −0.0094 (6) | 0.0000 (5) |
| C2 | 0.0602 (10) | 0.0732 (11) | 0.0495 (9) | −0.0187 (8) | −0.0198 (8) | −0.0046 (8) |
| C3 | 0.0721 (12) | 0.0905 (13) | 0.0386 (8) | −0.0158 (10) | −0.0134 (8) | −0.0033 (8) |
| C4 | 0.0544 (10) | 0.0684 (10) | 0.0420 (8) | −0.0070 (8) | −0.0013 (7) | 0.0030 (7) |
| C5 | 0.0414 (8) | 0.0553 (8) | 0.0445 (8) | −0.0127 (6) | −0.0033 (6) | 0.0017 (6) |
| C6 | 0.0381 (7) | 0.0357 (6) | 0.0382 (7) | −0.0079 (5) | −0.0045 (5) | −0.0010 (5) |
| C7 | 0.0720 (13) | 0.1168 (18) | 0.0473 (10) | −0.0174 (12) | 0.0065 (9) | 0.0066 (10) |
| C8 | 0.0331 (6) | 0.0340 (6) | 0.0426 (7) | −0.0099 (5) | −0.0056 (5) | −0.0014 (5) |
| C9 | 0.0315 (6) | 0.0337 (6) | 0.0355 (6) | −0.0097 (5) | −0.0060 (5) | 0.0001 (5) |
| C10 | 0.0380 (7) | 0.0470 (7) | 0.0461 (7) | −0.0147 (6) | −0.0133 (6) | 0.0016 (6) |
| C11 | 0.0389 (7) | 0.0360 (7) | 0.0450 (7) | −0.0114 (5) | 0.0017 (6) | −0.0042 (5) |
| C12 | 0.0370 (7) | 0.0382 (7) | 0.0457 (7) | −0.0126 (5) | −0.0109 (6) | 0.0078 (5) |
| N1 | 0.0289 (5) | 0.0316 (5) | 0.0380 (6) | −0.0087 (4) | −0.0063 (4) | −0.0013 (4) |
| O1 | 0.0373 (5) | 0.0354 (5) | 0.0522 (6) | −0.0108 (4) | −0.0086 (4) | −0.0016 (4) |
| O2 | 0.0382 (6) | 0.0497 (6) | 0.1130 (10) | −0.0030 (5) | −0.0300 (6) | −0.0023 (6) |
| O3 | 0.0417 (6) | 0.0313 (5) | 0.0726 (7) | −0.0088 (4) | 0.0055 (5) | −0.0010 (4) |
| O4 | 0.0361 (5) | 0.0378 (5) | 0.0659 (7) | −0.0156 (4) | −0.0140 (4) | 0.0094 (4) |
| C1—O1 | 1.3071 (16) | C9—N1 | 1.4654 (16) |
| C1—C2 | 1.407 (2) | C9—C10 | 1.5197 (17) |
| C1—C6 | 1.4174 (19) | C9—C12 | 1.5282 (17) |
| C2—C3 | 1.363 (3) | C9—C11 | 1.5305 (18) |
| C2—H2 | 0.9300 | C10—O2 | 1.4080 (19) |
| C3—C4 | 1.399 (3) | C10—H10A | 0.9700 |
| C3—H3 | 0.9300 | C10—H10B | 0.9700 |
| C4—C5 | 1.371 (2) | C11—O3 | 1.4085 (16) |
| C4—C7 | 1.508 (2) | C11—H11A | 0.9700 |
| C5—C6 | 1.4094 (19) | C11—H11B | 0.9700 |
| C5—H5 | 0.9300 | C12—O4 | 1.4060 (16) |
| C6—C8 | 1.4255 (18) | C12—H12A | 0.9700 |
| C7—H7A | 0.9600 | C12—H12B | 0.9700 |
| C7—H7B | 0.9600 | N1—H1 | 0.858 (18) |
| C7—H7C | 0.9600 | O2—H14 | 0.8200 |
| C8—N1 | 1.2856 (16) | O3—H13 | 0.8200 |
| C8—H8 | 0.9300 | O4—H4 | 0.8200 |
| O1—C1—C2 | 122.02 (13) | C10—C9—C12 | 110.25 (10) |
| O1—C1—C6 | 121.62 (12) | N1—C9—C11 | 107.87 (10) |
| C2—C1—C6 | 116.36 (13) | C10—C9—C11 | 109.93 (11) |
| C3—C2—C1 | 121.25 (15) | C12—C9—C11 | 110.19 (11) |
| C3—C2—H2 | 119.4 | O2—C10—C9 | 109.24 (11) |
| C1—C2—H2 | 119.4 | O2—C10—H10A | 109.8 |
| C2—C3—C4 | 123.19 (15) | C9—C10—H10A | 109.8 |
| C2—C3—H3 | 118.4 | O2—C10—H10B | 109.8 |
| C4—C3—H3 | 118.4 | C9—C10—H10B | 109.8 |
| C5—C4—C3 | 116.52 (15) | H10A—C10—H10B | 108.3 |
| C5—C4—C7 | 122.08 (16) | O3—C11—C9 | 108.51 (10) |
| C3—C4—C7 | 121.40 (16) | O3—C11—H11A | 110.0 |
| C4—C5—C6 | 122.10 (14) | C9—C11—H11A | 110.0 |
| C4—C5—H5 | 118.9 | O3—C11—H11B | 110.0 |
| C6—C5—H5 | 118.9 | C9—C11—H11B | 110.0 |
| C5—C6—C1 | 120.53 (12) | H11A—C11—H11B | 108.4 |
| C5—C6—C8 | 117.94 (12) | O4—C12—C9 | 109.49 (10) |
| C1—C6—C8 | 121.50 (12) | O4—C12—H12A | 109.8 |
| C4—C7—H7A | 109.5 | C9—C12—H12A | 109.8 |
| C4—C7—H7B | 109.5 | O4—C12—H12B | 109.8 |
| H7A—C7—H7B | 109.5 | C9—C12—H12B | 109.8 |
| C4—C7—H7C | 109.5 | H12A—C12—H12B | 108.2 |
| H7A—C7—H7C | 109.5 | C8—N1—C9 | 127.73 (11) |
| H7B—C7—H7C | 109.5 | C8—N1—H1 | 114.8 (10) |
| N1—C8—C6 | 123.60 (12) | C9—N1—H1 | 117.5 (10) |
| N1—C8—H8 | 118.2 | C10—O2—H14 | 109.5 |
| C6—C8—H8 | 118.2 | C11—O3—H13 | 109.5 |
| N1—C9—C10 | 111.90 (10) | C12—O4—H4 | 109.5 |
| N1—C9—C12 | 106.62 (10) | ||
| O1—C1—C2—C3 | 178.89 (16) | C1—C6—C8—N1 | 3.4 (2) |
| C6—C1—C2—C3 | −0.9 (2) | N1—C9—C10—O2 | −57.33 (14) |
| C1—C2—C3—C4 | −1.2 (3) | C12—C9—C10—O2 | 61.16 (15) |
| C2—C3—C4—C5 | 2.2 (3) | C11—C9—C10—O2 | −177.17 (11) |
| C2—C3—C4—C7 | −177.89 (19) | N1—C9—C11—O3 | −62.87 (13) |
| C3—C4—C5—C6 | −1.3 (2) | C10—C9—C11—O3 | 59.40 (14) |
| C7—C4—C5—C6 | 178.83 (16) | C12—C9—C11—O3 | −178.89 (10) |
| C4—C5—C6—C1 | −0.7 (2) | N1—C9—C12—O4 | −55.27 (13) |
| C4—C5—C6—C8 | 177.23 (13) | C10—C9—C12—O4 | −176.94 (11) |
| O1—C1—C6—C5 | −178.02 (12) | C11—C9—C12—O4 | 61.54 (14) |
| C2—C1—C6—C5 | 1.7 (2) | C6—C8—N1—C9 | −179.57 (11) |
| O1—C1—C6—C8 | 4.15 (19) | C10—C9—N1—C8 | −20.27 (17) |
| C2—C1—C6—C8 | −176.10 (13) | C12—C9—N1—C8 | −140.89 (12) |
| C5—C6—C8—N1 | −174.53 (13) | C11—C9—N1—C8 | 100.77 (14) |
| H··· | ||||
| O4—H4···O1i | 0.82 | 1.89 | 2.621 (1) | 148 |
| O3—H13···O1ii | 0.82 | 1.86 | 2.679 (1) | 178 |
| O2—H14···O4iii | 0.82 | 2.03 | 2.821 (1) | 163 |
| C8—H8···O3iv | 0.93 | 2.35 | 3.272 (2) | 171 |
| C10—H10A···O3iv | 0.97 | 2.58 | 3.379 (2) | 140 |
| N1—H1···O1 | 0.86 (2) | 1.93 (2) | 2.638 (1) | 138 (1) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O4—H4⋯O1i | 0.82 | 1.89 | 2.621 (1) | 148 |
| O3—H13⋯O1ii | 0.82 | 1.86 | 2.679 (1) | 178 |
| O2—H14⋯O4iii | 0.82 | 2.03 | 2.821 (1) | 163 |
| C8—H8⋯O3iv | 0.93 | 2.35 | 3.272 (2) | 171 |
| C10—H10 | 0.97 | 2.58 | 3.379 (2) | 140 |
| N1—H1⋯O1 | 0.86 (2) | 1.93 (2) | 2.638 (1) | 138 (1) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .