Literature DB >> 21580166

1,12-Bis(2-carboxy-phen-yl)-5,8-dioxa-2,11-diaza-dodecane-2,11-diium dichloride methanol solvate.

Samuel Johnson, Ghezai T Musie, Edward R T Tiekink.   

Abstract

In the title salt hydrate, C(22)H(30)N(2)O(6) (2+)·2Cl(-)·CH(4)O, the dication adopts a U-shaped conformation whereby the benzene rings are splayed out from the chain linking them. All components of the asymmetric unit are linked into a cohesive entity by a combination of O-H⋯Cl(-), N(+)-H⋯Cl(-) and N(+)-H⋯O charge-assisted hydrogen-bonding inter-actions. The assemblies thus formed are linked into supra-molecular helical chains along [010] via C-H⋯O contacts. The resulting chains are, in turn, consolidated into the three-dimensional crystal structure by C-H⋯π contacts.

Entities:  

Year:  2009        PMID: 21580166      PMCID: PMC2980219          DOI: 10.1107/S1600536809051824

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature on dinucleating ligands, see: Fenton & Okawa (1997 ▶); Uhlenbrock & Krebs (1992 ▶); Ghiladi et al. (1997 ▶); Koga et al. (1998 ▶); Kitagawa et al. (2004 ▶); Bradshaw et al. (2005 ▶).

Experimental

Crystal data

C22H30N2O6 2+·2Cl−·CH4O M = 521.42 Monoclinic, a = 11.567 (3) Å b = 11.352 (2) Å c = 20.052 (5) Å β = 102.760 (6)° V = 2568.0 (10) Å3 Z = 4 Mo Kα radiation μ = 0.30 mm−1 T = 93 K 0.40 × 0.30 × 0.20 mm

Data collection

Rigaku AFC12κ/SATURN724 diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.824, T max = 1.000 66801 measured reflections 5874 independent reflections 5598 reflections with I > 2σ(I) R int = 0.050 Standard reflections: 0

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.094 S = 1.05 5874 reflections 316 parameters 3 restraints H-atom parameters constrained Δρmax = 0.51 e Å−3 Δρmin = −0.34 e Å−3 Data collection: CrystalClear (Rigaku/MSC 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809051824/hg2615sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809051824/hg2615Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H30N2O62+·2Cl·CH4OF(000) = 1104
Mr = 521.42Dx = 1.349 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 10052 reflections
a = 11.567 (3) Åθ = 2.3–27.5°
b = 11.352 (2) ŵ = 0.30 mm1
c = 20.052 (5) ÅT = 93 K
β = 102.760 (6)°Needle, pale-yellow
V = 2568.0 (10) Å30.40 × 0.30 × 0.20 mm
Z = 4
Rigaku AFC12κ/SATURN724 diffractometer5874 independent reflections
Radiation source: fine-focus sealed tube5598 reflections with I > 2σ(I)
graphiteRint = 0.050
ω scansθmax = 27.6°, θmin = 2.4°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −15→15
Tmin = 0.824, Tmax = 1.000k = −14→14
66801 measured reflectionsl = −25→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0485P)2 + 1.3403P] where P = (Fo2 + 2Fc2)/3
5874 reflections(Δ/σ)max = 0.001
316 parametersΔρmax = 0.51 e Å3
3 restraintsΔρmin = −0.34 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.17035 (3)0.90851 (3)0.294477 (16)0.02137 (9)
Cl20.38918 (3)0.44293 (3)0.645104 (15)0.01982 (9)
O10.28564 (9)0.80955 (8)0.46826 (5)0.0219 (2)
O20.31089 (9)0.99194 (8)0.43228 (5)0.0226 (2)
H2O0.27880.96260.39420.034*
O30.06032 (8)0.70435 (9)0.54842 (5)0.0203 (2)
O4−0.00828 (8)0.63200 (8)0.41190 (5)0.01964 (19)
O50.29306 (9)0.53733 (8)0.47333 (5)0.0206 (2)
O60.37621 (9)0.36208 (8)0.50329 (5)0.0218 (2)
H6O0.37930.38780.54290.033*
O7−0.03491 (14)1.03638 (17)0.34730 (7)0.0617 (5)
H7O0.016041.00200.33020.093*
N10.29662 (9)0.68943 (9)0.58991 (5)0.0149 (2)
H1A0.25440.70800.54670.018*
H1B0.30510.60880.59190.018*
N20.18404 (9)0.65500 (9)0.35526 (5)0.0161 (2)
H2A0.18710.63870.40060.019*
H2B0.18450.73560.35070.019*
C10.32087 (11)0.91027 (11)0.48045 (6)0.0168 (2)
C20.37852 (11)0.95398 (11)0.55001 (6)0.0160 (2)
C30.39169 (12)1.07574 (11)0.56072 (7)0.0197 (3)
H30.36321.12810.52380.024*
C40.44551 (12)1.12139 (12)0.62416 (7)0.0212 (3)
H40.45381.20410.63060.025*
C50.48703 (11)1.04508 (12)0.67811 (7)0.0188 (3)
H50.52491.07540.72160.023*
C60.47325 (11)0.92430 (11)0.66853 (6)0.0169 (2)
H60.50100.87300.70610.020*
C70.41960 (10)0.87617 (11)0.60510 (6)0.0149 (2)
C80.41731 (10)0.74319 (11)0.59949 (7)0.0161 (2)
H8A0.45190.72010.56040.019*
H8B0.46840.71000.64150.019*
C90.22530 (11)0.72536 (11)0.63977 (6)0.0180 (2)
H9A0.21900.81230.64090.022*
H9B0.26400.69770.68620.022*
C100.10344 (12)0.67130 (12)0.61791 (7)0.0205 (3)
H10A0.10810.58450.62230.025*
H10B0.05040.70140.64660.025*
C11−0.05474 (11)0.65894 (13)0.52063 (7)0.0223 (3)
H11A−0.11270.69330.54480.027*
H11B−0.05500.57230.52640.027*
C12−0.08839 (11)0.68984 (13)0.44601 (7)0.0222 (3)
H12A−0.17060.66410.42640.027*
H12B−0.08400.77620.44010.027*
C13−0.03062 (11)0.66044 (12)0.34123 (7)0.0196 (3)
H13A−0.03400.74690.33490.023*
H13B−0.10720.62640.31700.023*
C140.06982 (11)0.60919 (12)0.31388 (7)0.0191 (3)
H14A0.06840.52220.31670.023*
H14B0.06130.63170.26530.023*
C150.29383 (11)0.60681 (11)0.33720 (7)0.0179 (2)
H15A0.36360.62960.37310.022*
H15B0.30300.64220.29360.022*
C160.29048 (10)0.47434 (11)0.33022 (6)0.0155 (2)
C170.30167 (10)0.39592 (11)0.38574 (6)0.0154 (2)
C180.29275 (11)0.27445 (11)0.37379 (7)0.0175 (2)
H180.29870.22200.41130.021*
C190.27540 (11)0.22952 (11)0.30795 (7)0.0190 (3)
H190.26710.14710.30030.023*
C200.27025 (11)0.30619 (12)0.25346 (7)0.0196 (3)
H200.26290.27610.20850.023*
C210.27589 (11)0.42735 (12)0.26475 (7)0.0185 (3)
H210.26960.47910.22690.022*
C220.32280 (10)0.43990 (11)0.45765 (6)0.0160 (2)
C230.00444 (18)1.02239 (16)0.41719 (9)0.0399 (4)
H23A0.06921.07780.43420.060*
H23B0.03300.94160.42710.060*
H23C−0.06101.03780.43980.060*
U11U22U33U12U13U23
Cl10.03162 (17)0.01666 (15)0.01446 (16)−0.00054 (11)0.00213 (12)0.00079 (11)
Cl20.02616 (16)0.01604 (15)0.01504 (16)0.00147 (11)−0.00022 (11)0.00010 (10)
O10.0312 (5)0.0167 (4)0.0155 (5)−0.0051 (4)0.0004 (4)−0.0002 (3)
O20.0343 (5)0.0167 (4)0.0139 (5)−0.0046 (4)−0.0007 (4)0.0016 (3)
O30.0168 (4)0.0256 (5)0.0181 (5)−0.0050 (4)0.0034 (3)−0.0004 (4)
O40.0181 (4)0.0231 (5)0.0173 (5)0.0043 (4)0.0031 (3)0.0009 (4)
O50.0274 (5)0.0173 (4)0.0162 (5)0.0042 (4)0.0025 (4)−0.0016 (3)
O60.0302 (5)0.0199 (5)0.0140 (5)0.0071 (4)0.0017 (4)0.0008 (4)
O70.0603 (9)0.0978 (12)0.0255 (7)0.0453 (9)0.0063 (6)0.0057 (7)
N10.0172 (5)0.0135 (5)0.0141 (5)−0.0007 (4)0.0032 (4)−0.0008 (4)
N20.0188 (5)0.0144 (5)0.0143 (5)0.0003 (4)0.0020 (4)−0.0008 (4)
C10.0175 (6)0.0169 (6)0.0158 (6)−0.0002 (4)0.0031 (5)0.0012 (5)
C20.0162 (5)0.0164 (6)0.0148 (6)−0.0006 (4)0.0024 (4)−0.0007 (4)
C30.0234 (6)0.0162 (6)0.0186 (7)−0.0003 (5)0.0024 (5)0.0015 (5)
C40.0252 (6)0.0156 (6)0.0227 (7)−0.0014 (5)0.0048 (5)−0.0034 (5)
C50.0188 (6)0.0210 (6)0.0162 (6)−0.0015 (5)0.0030 (5)−0.0047 (5)
C60.0152 (5)0.0206 (6)0.0146 (6)0.0010 (4)0.0025 (4)0.0001 (5)
C70.0138 (5)0.0151 (5)0.0161 (6)0.0001 (4)0.0038 (4)−0.0009 (4)
C80.0149 (5)0.0144 (5)0.0183 (6)0.0006 (4)0.0026 (4)0.0008 (4)
C90.0208 (6)0.0199 (6)0.0142 (6)−0.0021 (5)0.0057 (5)−0.0023 (5)
C100.0224 (6)0.0230 (6)0.0169 (7)−0.0047 (5)0.0056 (5)−0.0007 (5)
C110.0159 (6)0.0287 (7)0.0233 (7)−0.0039 (5)0.0066 (5)−0.0048 (5)
C120.0155 (6)0.0271 (7)0.0237 (7)0.0014 (5)0.0041 (5)−0.0045 (5)
C130.0195 (6)0.0198 (6)0.0173 (7)0.0018 (5)−0.0004 (5)0.0009 (5)
C140.0200 (6)0.0203 (6)0.0153 (6)−0.0011 (5)0.0002 (5)−0.0007 (5)
C150.0190 (6)0.0160 (6)0.0200 (7)−0.0010 (4)0.0068 (5)0.0008 (5)
C160.0143 (5)0.0160 (6)0.0170 (6)−0.0004 (4)0.0051 (4)−0.0004 (4)
C170.0131 (5)0.0165 (6)0.0165 (6)−0.0002 (4)0.0032 (4)−0.0011 (5)
C180.0160 (5)0.0158 (6)0.0206 (7)0.0005 (4)0.0039 (5)0.0006 (5)
C190.0156 (5)0.0164 (6)0.0245 (7)−0.0010 (4)0.0036 (5)−0.0040 (5)
C200.0180 (6)0.0236 (6)0.0173 (6)−0.0027 (5)0.0042 (5)−0.0059 (5)
C210.0188 (6)0.0208 (6)0.0166 (6)−0.0017 (5)0.0054 (5)0.0007 (5)
C220.0144 (5)0.0165 (6)0.0169 (6)0.0001 (4)0.0030 (4)0.0001 (4)
C230.0546 (11)0.0366 (9)0.0302 (9)0.0102 (8)0.0130 (8)0.0026 (7)
O1—C11.2203 (16)C8—H8B0.9900
O2—C11.3254 (15)C9—C101.5108 (18)
O2—H2O0.8401C9—H9A0.9900
O3—C111.4212 (16)C9—H9B0.9900
O3—C101.4227 (17)C10—H10A0.9900
O4—C131.4203 (16)C10—H10B0.9900
O4—C121.4275 (16)C11—C121.502 (2)
O5—C221.2200 (16)C11—H11A0.9900
O6—C221.3228 (15)C11—H11B0.9900
O6—H6O0.8402C12—H12A0.9900
O7—C231.384 (2)C12—H12B0.9900
O7—H7O0.8401C13—C141.5068 (18)
N1—C91.4869 (16)C13—H13A0.9900
N1—C81.4965 (15)C13—H13B0.9900
N1—H1A0.9200C14—H14A0.9900
N1—H1B0.9200C14—H14B0.9900
N2—C141.4901 (16)C15—C161.5100 (17)
N2—C151.4987 (16)C15—H15A0.9900
N2—H2A0.9200C15—H15B0.9900
N2—H2B0.9200C16—C211.3924 (18)
C1—C21.4918 (17)C16—C171.4090 (17)
C2—C31.4021 (17)C17—C181.3996 (17)
C2—C71.4122 (17)C17—C221.4941 (18)
C3—C41.3872 (19)C18—C191.3880 (19)
C3—H30.9500C18—H180.9500
C4—C51.3864 (19)C19—C201.3880 (19)
C4—H40.9500C19—H190.9500
C5—C61.3889 (18)C20—C211.3931 (18)
C5—H50.9500C20—H200.9500
C6—C71.3975 (18)C21—H210.9500
C6—H60.9500C23—H23A0.9800
C7—C81.5136 (17)C23—H23B0.9800
C8—H8A0.9900C23—H23C0.9800
C1—O2—H2O109.5O3—C11—H11A110.0
C11—O3—C10112.56 (10)C12—C11—H11A110.0
C13—O4—C12112.29 (10)O3—C11—H11B110.0
C22—O6—H6O109.7C12—C11—H11B110.0
C23—O7—H7O104.8H11A—C11—H11B108.3
C9—N1—C8116.24 (10)O4—C12—C11108.49 (11)
C9—N1—H1A108.2O4—C12—H12A110.0
C8—N1—H1A108.2C11—C12—H12A110.0
C9—N1—H1B108.2O4—C12—H12B110.0
C8—N1—H1B108.2C11—C12—H12B110.0
H1A—N1—H1B107.4H12A—C12—H12B108.4
C14—N2—C15115.62 (10)O4—C13—C14106.89 (10)
C14—N2—H2A108.4O4—C13—H13A110.3
C15—N2—H2A108.4C14—C13—H13A110.3
C14—N2—H2B108.4O4—C13—H13B110.3
C15—N2—H2B108.4C14—C13—H13B110.3
H2A—N2—H2B107.4H13A—C13—H13B108.6
O1—C1—O2122.54 (12)N2—C14—C13108.82 (10)
O1—C1—C2124.02 (11)N2—C14—H14A109.9
O2—C1—C2113.44 (11)C13—C14—H14A109.9
C3—C2—C7119.37 (12)N2—C14—H14B109.9
C3—C2—C1118.83 (11)C13—C14—H14B109.9
C7—C2—C1121.80 (11)H14A—C14—H14B108.3
C4—C3—C2121.36 (12)N2—C15—C16112.35 (10)
C4—C3—H3119.3N2—C15—H15A109.1
C2—C3—H3119.3C16—C15—H15A109.1
C5—C4—C3119.35 (12)N2—C15—H15B109.1
C5—C4—H4120.3C16—C15—H15B109.1
C3—C4—H4120.3H15A—C15—H15B107.9
C4—C5—C6119.97 (12)C21—C16—C17118.28 (11)
C4—C5—H5120.0C21—C16—C15117.67 (11)
C6—C5—H5120.0C17—C16—C15124.05 (11)
C5—C6—C7121.75 (12)C18—C17—C16119.79 (12)
C5—C6—H6119.1C18—C17—C22118.99 (11)
C7—C6—H6119.1C16—C17—C22121.22 (11)
C6—C7—C2118.20 (11)C19—C18—C17120.98 (12)
C6—C7—C8117.04 (11)C19—C18—H18119.5
C2—C7—C8124.64 (11)C17—C18—H18119.5
N1—C8—C7114.63 (10)C20—C19—C18119.37 (12)
N1—C8—H8A108.6C20—C19—H19120.3
C7—C8—H8A108.6C18—C19—H19120.3
N1—C8—H8B108.6C19—C20—C21119.93 (12)
C7—C8—H8B108.6C19—C20—H20120.0
H8A—C8—H8B107.6C21—C20—H20120.0
N1—C9—C10108.30 (10)C16—C21—C20121.54 (12)
N1—C9—H9A110.0C16—C21—H21119.2
C10—C9—H9A110.0C20—C21—H21119.2
N1—C9—H9B110.0O5—C22—O6122.85 (12)
C10—C9—H9B110.0O5—C22—C17123.80 (11)
H9A—C9—H9B108.4O6—C22—C17113.35 (11)
O3—C10—C9106.25 (10)O7—C23—H23A109.5
O3—C10—H10A110.5O7—C23—H23B109.5
C9—C10—H10A110.5H23A—C23—H23B109.5
O3—C10—H10B110.5O7—C23—H23C109.5
C9—C10—H10B110.5H23A—C23—H23C109.5
H10A—C10—H10B108.7H23B—C23—H23C109.5
O3—C11—C12108.67 (11)
O1—C1—C2—C3−166.11 (13)O3—C11—C12—O463.74 (14)
O2—C1—C2—C313.74 (17)C12—O4—C13—C14171.72 (10)
O1—C1—C2—C713.7 (2)C15—N2—C14—C13176.57 (10)
O2—C1—C2—C7−166.45 (11)O4—C13—C14—N2−55.46 (13)
C7—C2—C3—C40.7 (2)C14—N2—C15—C16−47.35 (15)
C1—C2—C3—C4−179.44 (12)N2—C15—C16—C21108.39 (13)
C2—C3—C4—C5−0.1 (2)N2—C15—C16—C17−71.88 (15)
C3—C4—C5—C6−0.8 (2)C21—C16—C17—C18−2.78 (17)
C4—C5—C6—C70.94 (19)C15—C16—C17—C18177.49 (11)
C5—C6—C7—C2−0.25 (18)C21—C16—C17—C22177.33 (11)
C5—C6—C7—C8175.76 (11)C15—C16—C17—C22−2.41 (18)
C3—C2—C7—C6−0.58 (18)C16—C17—C18—C191.33 (18)
C1—C2—C7—C6179.61 (11)C22—C17—C18—C19−178.77 (11)
C3—C2—C7—C8−176.27 (12)C17—C18—C19—C201.87 (18)
C1—C2—C7—C83.93 (19)C18—C19—C20—C21−3.56 (18)
C9—N1—C8—C7−51.76 (14)C17—C16—C21—C201.10 (18)
C6—C7—C8—N1111.81 (12)C15—C16—C21—C20−179.15 (11)
C2—C7—C8—N1−72.46 (15)C19—C20—C21—C162.09 (19)
C8—N1—C9—C10174.80 (10)C18—C17—C22—O5−154.04 (12)
C11—O3—C10—C9179.84 (10)C16—C17—C22—O525.86 (18)
N1—C9—C10—O3−53.07 (13)C18—C17—C22—O625.28 (16)
C10—O3—C11—C12−175.41 (11)C16—C17—C22—O6−154.82 (11)
C13—O4—C12—C11−177.50 (10)
D—H···AD—HH···AD···AD—H···A
O2—H2O···Cl10.842.203.0316 (13)170
O6—H6O···Cl20.842.122.9602 (13)177
O7—H7O···Cl10.842.323.1586 (19)174
N1—H1A···O10.922.052.7729 (16)135
N1—H1A···O30.922.252.6809 (16)108
N1—H1B···Cl20.922.273.1110 (13)151
N2—H2A···O40.922.322.7245 (16)106
N2—H2A···O50.922.042.7678 (16)135
N2—H2B···Cl10.922.253.1157 (13)156
C14—H14B···O7i0.992.463.273 (2)139
C8—H8B···Cgii0.992.883.6364 (16)134
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2O⋯Cl10.842.203.0316 (13)170
O6—H6O⋯Cl20.842.122.9602 (13)177
O7—H7O⋯Cl10.842.323.1586 (19)174
N1—H1A⋯O10.922.052.7729 (16)135
N1—H1A⋯O30.922.252.6809 (16)108
N1—H1B⋯Cl20.922.273.1110 (13)151
N2—H2A⋯O40.922.322.7245 (16)106
N2—H2A⋯O50.922.042.7678 (16)135
N2—H2B⋯Cl10.922.253.1157 (13)156
C14—H14B⋯O7i0.992.463.273 (2)139
C8—H8BCgii0.992.883.6364 (16)134

Symmetry codes: (i) ; (ii) . Cg is the centroid of the C16–C21 ring.

  3 in total

1.  Functional porous coordination polymers.

Authors:  Susumu Kitagawa; Ryo Kitaura; Shin-ichiro Noro
Journal:  Angew Chem Int Ed Engl       Date:  2004-04-26       Impact factor: 15.336

2.  Design, chirality, and flexibility in nanoporous molecule-based materials.

Authors:  D Bradshaw; J B Claridge; E J Cussen; T J Prior; M J Rosseinsky
Journal:  Acc Chem Res       Date:  2005-04       Impact factor: 22.384

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  3 in total

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