Literature DB >> 21580128

5-Bromo-spiro-[1,2-dioxane-4,4'-tricyclo-[4.3.1.1]undeca-ne]-3'-ol.

Tony V Robinson, Dennis K Taylor, Edward R T Tiekink.   

Abstract

The title compound, C(14)H(21)BrO(3), comprises a seven- (C(7)) and three six-membered (1 × O(2)C(4) and 2 × C(6)) rings, and each adopts a conformation based on a chair. Stability to the mol-ecular structure is afforded by an intra-molecular O-H⋯Br hydrogen bond. In the crystal structure, mol-ecules are arranged into a helical supra-molecular chain along the b axis, linked by C-H⋯O inter-actions, where the O-atom acceptor is one of the dioxane O atoms. The crystal studied was found to be a racemic twin. The major component was present 94% of the time.

Entities:  

Year:  2009        PMID: 21580128      PMCID: PMC2980170          DOI: 10.1107/S1600536809054762

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the background to endoperoxides, see: Casteel (1999 ▶); Tang et al. (2004 ▶). For the potential of simple 1,2-dioxines and ep­oxy-1,2-dioxanes as novel anti­malarial and anti­fungal agents, see: Taylor et al. (2004 ▶); Crespo et al. (2008 ▶); Macreadie et al. (2006 ▶, 2008 ▶); Avery et al. (2007 ▶). For the synthesis of related compounds, see: Robinson (2003 ▶).

Experimental

Crystal data

C14H21BrO3 M = 317.22 Monoclinic, a = 8.6199 (7) Å b = 6.6370 (5) Å c = 11.7171 (9) Å β = 105.426 (2)° V = 646.19 (9) Å3 Z = 2 Mo Kα radiation μ = 3.18 mm−1 T = 293 K 0.19 × 0.11 × 0.08 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.657, T max = 1 4618 measured reflections 2140 independent reflections 2063 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.094 S = 1.04 2140 reflections 167 parameters 2 restraints H-atom parameters constrained Δρmax = 0.77 e Å−3 Δρmin = −0.49 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: PATTY in DIRDIF92 (Beurskens et al., 1992 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809054762/hb5281sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809054762/hb5281Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H21BrO3F(000) = 328
Mr = 317.22Dx = 1.630 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71069 Å
Hall symbol: P 2ybCell parameters from 2705 reflections
a = 8.6199 (7) Åθ = 2.5–29.5°
b = 6.6370 (5) ŵ = 3.18 mm1
c = 11.7171 (9) ÅT = 293 K
β = 105.426 (2)°Block, colourless
V = 646.19 (9) Å30.19 × 0.11 × 0.08 mm
Z = 2
Bruker SMART CCD diffractometer2140 independent reflections
Radiation source: fine-focus sealed tube2063 reflections with I > 2σ(I)
graphiteRint = 0.040
ω scansθmax = 27.5°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −11→11
Tmin = 0.657, Tmax = 1k = −5→8
4618 measured reflectionsl = −14→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0714P)2 + 0.0296P] where P = (Fo2 + 2Fc2)/3
2140 reflections(Δ/σ)max = 0.001
167 parametersΔρmax = 0.77 e Å3
2 restraintsΔρmin = −0.49 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br0.03137 (4)0.40212 (10)0.92113 (2)0.03533 (13)
O1−0.0876 (3)0.3711 (5)0.5673 (2)0.0309 (6)
O2−0.1461 (3)0.5051 (5)0.6461 (3)0.0346 (6)
O30.1635 (3)0.0061 (4)0.8367 (2)0.0295 (6)
H3o0.13310.08760.88110.044*
C10.1666 (4)0.3109 (5)0.7167 (2)0.0183 (6)
C20.0084 (4)0.2208 (5)0.6406 (3)0.0241 (7)
H2A0.03260.11300.59080.029*
H2B−0.05210.16190.69230.029*
C3−0.0120 (4)0.6195 (6)0.7095 (4)0.0313 (8)
H3A−0.04760.71840.75930.038*
H3B0.03320.69330.65340.038*
C40.1193 (4)0.4853 (5)0.7878 (3)0.0227 (6)
H40.21590.56930.82020.027*
C50.2688 (4)0.1354 (5)0.7913 (3)0.0206 (6)
C60.4047 (4)0.2092 (6)0.8964 (3)0.0254 (7)
H6A0.36590.32620.93170.031*
H6B0.42910.10260.95640.031*
C70.5598 (4)0.2675 (6)0.8661 (3)0.0259 (7)
H70.64100.30260.94060.031*
C80.5395 (4)0.4492 (5)0.7823 (3)0.0270 (7)
H8A0.64640.49660.78010.032*
H8B0.48740.55840.81450.032*
C90.4400 (3)0.4049 (7)0.6548 (2)0.0257 (6)
H90.46760.51360.60570.031*
C100.2557 (4)0.4135 (7)0.6318 (2)0.0241 (6)
H10A0.20980.35660.55280.029*
H10B0.22580.55630.62720.029*
C110.6215 (4)0.0862 (7)0.8115 (3)0.0328 (8)
H11A0.6336−0.02980.86490.039*
H11B0.72680.11670.79870.039*
C120.5010 (4)0.0371 (6)0.6937 (3)0.0296 (7)
H120.5392−0.08420.66010.035*
C130.4948 (5)0.2104 (7)0.6087 (4)0.0342 (9)
H13A0.42050.17680.53210.041*
H13B0.60190.23050.59650.041*
C140.3364 (4)−0.0107 (6)0.7144 (3)0.0264 (7)
H14A0.3432−0.14450.75080.032*
H14B0.2578−0.01960.63690.032*
U11U22U33U12U13U23
Br0.03383 (19)0.0473 (2)0.02721 (17)−0.00431 (19)0.01216 (12)−0.00797 (18)
O10.0285 (10)0.0314 (16)0.0266 (10)0.0015 (13)−0.0033 (8)0.0014 (11)
O20.0235 (12)0.0337 (15)0.0430 (15)0.0023 (11)0.0027 (11)−0.0026 (12)
O30.0362 (14)0.0220 (13)0.0307 (13)−0.0085 (11)0.0096 (11)0.0070 (10)
C10.0191 (13)0.0172 (14)0.0163 (12)−0.0015 (12)0.0005 (11)0.0006 (11)
C20.0251 (15)0.0206 (16)0.0221 (15)−0.0037 (14)−0.0015 (12)−0.0012 (12)
C30.0270 (17)0.0204 (17)0.0436 (19)−0.0016 (14)0.0046 (15)−0.0023 (15)
C40.0210 (14)0.0211 (14)0.0253 (15)−0.0039 (13)0.0047 (12)−0.0030 (12)
C50.0238 (14)0.0177 (15)0.0189 (13)−0.0021 (13)0.0029 (11)0.0014 (11)
C60.0296 (16)0.0264 (17)0.0171 (13)0.0002 (14)0.0005 (12)0.0018 (12)
C70.0252 (15)0.0264 (18)0.0218 (14)0.0012 (14)−0.0013 (12)−0.0012 (13)
C80.0248 (14)0.0221 (18)0.0318 (15)−0.0052 (12)0.0035 (12)−0.0022 (13)
C90.0252 (13)0.0274 (15)0.0249 (12)−0.005 (2)0.0075 (10)0.0022 (19)
C100.0275 (13)0.0235 (15)0.0204 (11)−0.0014 (17)0.0051 (10)0.0058 (15)
C110.0257 (16)0.032 (2)0.0355 (18)0.0069 (15)−0.0003 (14)−0.0029 (16)
C120.0258 (16)0.0273 (17)0.0339 (17)0.0035 (14)0.0049 (14)−0.0106 (15)
C130.0317 (18)0.047 (2)0.0264 (15)−0.0014 (17)0.0117 (13)−0.0060 (16)
C140.0318 (16)0.0157 (14)0.0285 (16)−0.0014 (14)0.0024 (13)−0.0049 (13)
Br—C41.987 (3)C7—C111.524 (5)
O1—C21.428 (4)C7—C81.535 (5)
O1—O21.465 (4)C7—H70.9900
O2—C31.417 (5)C8—C91.540 (4)
O3—C51.449 (4)C8—H8A0.9800
O3—H3O0.8400C8—H8B0.9800
C1—C21.538 (4)C9—C131.522 (6)
C1—C41.543 (5)C9—C101.540 (4)
C1—C101.566 (4)C9—H90.9900
C1—C51.577 (4)C10—H10A0.9800
C2—H2A0.9800C10—H10B0.9800
C2—H2B0.9800C11—C121.526 (5)
C3—C41.537 (5)C11—H11A0.9800
C3—H3A0.9800C11—H11B0.9800
C3—H3B0.9800C12—C131.513 (6)
C4—H40.9900C12—C141.535 (5)
C5—C61.537 (4)C12—H120.9900
C5—C141.539 (5)C13—H13A0.9800
C6—C71.522 (5)C13—H13B0.9800
C6—H6A0.9800C14—H14A0.9800
C6—H6B0.9800C14—H14B0.9800
C2—O1—O2106.6 (2)C8—C7—H7108.2
C3—O2—O1106.6 (3)C7—C8—C9114.2 (3)
C5—O3—H3O100.1C7—C8—H8A108.7
C2—C1—C4106.5 (3)C9—C8—H8A108.7
C2—C1—C10108.0 (2)C7—C8—H8B108.7
C4—C1—C10105.2 (3)C9—C8—H8B108.7
C2—C1—C5108.2 (3)H8A—C8—H8B107.6
C4—C1—C5116.4 (2)C13—C9—C8111.2 (3)
C10—C1—C5112.2 (3)C13—C9—C10111.8 (3)
O1—C2—C1111.1 (3)C8—C9—C10116.4 (3)
O1—C2—H2A109.4C13—C9—H9105.5
C1—C2—H2A109.4C8—C9—H9105.5
O1—C2—H2B109.4C10—C9—H9105.5
C1—C2—H2B109.4C9—C10—C1122.0 (3)
H2A—C2—H2B108.0C9—C10—H10A106.8
O2—C3—C4111.8 (3)C1—C10—H10A106.8
O2—C3—H3A109.3C9—C10—H10B106.8
C4—C3—H3A109.3C1—C10—H10B106.8
O2—C3—H3B109.3H10A—C10—H10B106.7
C4—C3—H3B109.3C7—C11—C12108.6 (3)
H3A—C3—H3B107.9C7—C11—H11A110.0
C3—C4—C1111.8 (3)C12—C11—H11A110.0
C3—C4—Br104.8 (2)C7—C11—H11B110.0
C1—C4—Br115.2 (2)C12—C11—H11B110.0
C3—C4—H4108.3H11A—C11—H11B108.4
C1—C4—H4108.3C13—C12—C11109.2 (3)
Br—C4—H4108.3C13—C12—C14112.9 (3)
O3—C5—C6108.2 (3)C11—C12—C14109.6 (3)
O3—C5—C14102.3 (3)C13—C12—H12108.3
C6—C5—C14110.1 (3)C11—C12—H12108.3
O3—C5—C1109.2 (2)C14—C12—H12108.3
C6—C5—C1113.8 (3)C12—C13—C9111.8 (3)
C14—C5—C1112.6 (2)C12—C13—H13A109.3
C7—C6—C5115.1 (3)C9—C13—H13A109.3
C7—C6—H6A108.5C12—C13—H13B109.3
C5—C6—H6A108.5C9—C13—H13B109.3
C7—C6—H6B108.5H13A—C13—H13B107.9
C5—C6—H6B108.5C12—C14—C5118.2 (3)
H6A—C6—H6B107.5C12—C14—H14A107.8
C6—C7—C11108.9 (3)C5—C14—H14A107.8
C6—C7—C8113.0 (3)C12—C14—H14B107.8
C11—C7—C8110.2 (3)C5—C14—H14B107.8
C6—C7—H7108.2H14A—C14—H14B107.1
C11—C7—H7108.2
C2—O1—O2—C371.9 (3)C1—C5—C6—C7−83.6 (4)
O2—O1—C2—C1−70.2 (3)C5—C6—C7—C11−58.4 (4)
C4—C1—C2—O156.4 (3)C5—C6—C7—C864.3 (4)
C10—C1—C2—O1−56.1 (4)C6—C7—C8—C9−70.6 (4)
C5—C1—C2—O1−177.8 (3)C11—C7—C8—C951.5 (4)
O1—O2—C3—C4−63.0 (4)C7—C8—C9—C13−47.0 (4)
O2—C3—C4—C152.4 (4)C7—C8—C9—C1082.7 (4)
O2—C3—C4—Br−73.1 (3)C13—C9—C10—C183.5 (4)
C2—C1—C4—C3−45.5 (3)C8—C9—C10—C1−45.8 (6)
C10—C1—C4—C369.0 (3)C2—C1—C10—C9−142.2 (4)
C5—C1—C4—C3−166.2 (3)C4—C1—C10—C9104.4 (4)
C2—C1—C4—Br74.1 (3)C5—C1—C10—C9−23.0 (5)
C10—C1—C4—Br−171.44 (19)C6—C7—C11—C1265.3 (4)
C5—C1—C4—Br−46.6 (3)C8—C7—C11—C12−59.2 (4)
C2—C1—C5—O3−42.1 (3)C7—C11—C12—C1364.5 (4)
C4—C1—C5—O377.7 (3)C7—C11—C12—C14−59.6 (4)
C10—C1—C5—O3−161.2 (3)C11—C12—C13—C9−61.1 (4)
C2—C1—C5—C6−163.1 (3)C14—C12—C13—C961.2 (4)
C4—C1—C5—C6−43.4 (4)C8—C9—C13—C1251.4 (4)
C10—C1—C5—C677.8 (4)C10—C9—C13—C12−80.6 (4)
C2—C1—C5—C1470.8 (3)C13—C12—C14—C5−73.5 (4)
C4—C1—C5—C14−169.5 (3)C11—C12—C14—C548.5 (4)
C10—C1—C5—C14−48.3 (3)O3—C5—C14—C12−154.2 (3)
O3—C5—C6—C7154.8 (3)C6—C5—C14—C12−39.3 (4)
C14—C5—C6—C743.8 (4)C1—C5—C14—C1288.7 (4)
D—H···AD—HH···AD···AD—H···A
O3—H3o···Br0.842.363.128 (3)153
C2—H2a···O1i0.982.593.560 (4)171
C14—H14b···O1i0.982.563.513 (4)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3o⋯Br0.842.363.128 (3)153
C2—H2a⋯O1i0.982.593.560 (4)171
C14—H14b⋯O1i0.982.563.513 (4)165

Symmetry code: (i) .

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