Literature DB >> 21580126

6-Formyl-2-naphthyl cis-1,5,7-trimethyl-2,4-dioxo-3-aza-bicyclo-[3.3.1]nonane-7-carboxyl-ate.

Sheng-Guang Xu1, Chun-Hua Wang, Jun-Shen Liu, Xi-Guang Liu, Long Li.   

Abstract

In the title compound, C(23)H(23)NO(5), the C(5)N ring adopts an envelope conformation with a C atom as the flap, whilst the saturated C(6) ring fused to it adopts a chair conformation. In the crystal, inversion dimers linked by pairs of N-H⋯O hydrogen bonds generate R(2) (2)(8) loops.

Entities:  

Year:  2009        PMID: 21580126      PMCID: PMC2980281          DOI: 10.1107/S1600536809054786

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For further information on the title compound as a building block in a dynamic combinatorial library, see: Xu & Giuseppone (2008 ▶). For further synthetic details, see: Askew et al. (1989 ▶); Rebek et al. (1987 ▶); Steglich & Höfle (1969 ▶); Williams et al. (1989 ▶); Chamontin et al. (1999 ▶).

Experimental

Crystal data

C23H23NO5 M = 393.42 Monoclinic, a = 11.896 (2) Å b = 11.692 (2) Å c = 16.636 (2) Å β = 121.124 (9)° V = 1980.8 (5) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.28 × 0.20 × 0.20 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.974, T max = 0.982 10443 measured reflections 3897 independent reflections 3217 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.105 S = 1.03 3897 reflections 265 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809054786/hb5273sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809054786/hb5273Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H23NO5F(000) = 832
Mr = 393.42Dx = 1.319 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4643 reflections
a = 11.896 (2) Åθ = 2.5–27.6°
b = 11.692 (2) ŵ = 0.09 mm1
c = 16.636 (2) ÅT = 298 K
β = 121.124 (9)°Block, colourless
V = 1980.8 (5) Å30.28 × 0.20 × 0.20 mm
Z = 4
Bruker APEXII CCD diffractometer3897 independent reflections
Radiation source: fine-focus sealed tube3217 reflections with I > 2σ(I)
graphiteRint = 0.018
φ and ω scanθmax = 26.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −11→14
Tmin = 0.974, Tmax = 0.982k = −14→14
10443 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0518P)2 + 0.4083P] where P = (Fo2 + 2Fc2)/3
3897 reflections(Δ/σ)max < 0.001
265 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R– factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.13914 (15)1.52850 (10)0.66763 (9)0.0827 (4)
O20.79931 (9)0.84989 (8)0.48814 (7)0.0446 (2)
O30.71422 (10)0.81424 (10)0.57896 (7)0.0535 (3)
O40.56292 (11)0.98673 (8)0.30018 (7)0.0501 (3)
O50.40949 (11)0.87877 (9)0.48523 (8)0.0535 (3)
N10.48608 (11)0.92723 (9)0.39106 (8)0.0393 (3)
H220.50940.99260.42020.047*
C11.14643 (17)1.43589 (14)0.70153 (12)0.0571 (4)
H11.20611.42680.76540.069*
C21.06708 (14)1.33579 (12)0.64863 (10)0.0419 (3)
C31.08892 (14)1.23220 (12)0.69289 (10)0.0434 (3)
H31.15151.22680.75660.052*
C41.01832 (12)1.13362 (11)0.64376 (9)0.0382 (3)
C50.92258 (12)1.14345 (11)0.54671 (9)0.0354 (3)
C60.90366 (13)1.25141 (12)0.50278 (10)0.0434 (3)
H60.84271.25840.43890.052*
C70.97267 (14)1.34465 (12)0.55196 (10)0.0442 (3)
H70.95771.41490.52180.053*
C80.84911 (12)1.04604 (12)0.49738 (9)0.0393 (3)
H80.78531.05150.43400.047*
C90.87159 (13)0.94461 (12)0.54251 (9)0.0393 (3)
C100.96829 (15)0.93151 (13)0.63736 (10)0.0500 (4)
H100.98420.86040.66630.060*
C111.03874 (15)1.02504 (13)0.68656 (10)0.0509 (4)
H111.10191.01720.74990.061*
C120.72086 (12)0.79239 (11)0.51122 (9)0.0363 (3)
C130.65192 (13)0.69261 (10)0.44424 (9)0.0362 (3)
C140.75342 (16)0.59438 (13)0.48707 (12)0.0572 (4)
H14A0.71850.52730.44860.086*
H14B0.77180.57800.54930.086*
H14C0.83300.61690.48990.086*
C150.61823 (13)0.71551 (11)0.34325 (9)0.0369 (3)
H15A0.60670.64250.31230.044*
H15B0.69280.75320.34590.044*
C160.49451 (13)0.78899 (10)0.28177 (8)0.0359 (3)
C170.37796 (13)0.73661 (11)0.28312 (9)0.0382 (3)
H17A0.36160.66020.25670.046*
H17B0.30010.78240.24470.046*
C180.40466 (13)0.73080 (10)0.38319 (9)0.0360 (3)
C190.52754 (13)0.65756 (11)0.44435 (9)0.0389 (3)
H19A0.54680.66010.50850.047*
H19B0.50710.57890.42330.047*
C200.51756 (13)0.90892 (10)0.32291 (8)0.0358 (3)
C210.43114 (13)0.85050 (11)0.42433 (9)0.0374 (3)
C220.47044 (18)0.79546 (14)0.18231 (10)0.0546 (4)
H22A0.39590.84340.14430.082*
H22B0.45390.72010.15570.082*
H22C0.54650.82690.18440.082*
C230.28802 (16)0.68016 (14)0.38570 (12)0.0558 (4)
H23A0.30610.68130.44900.084*
H23B0.27400.60270.36330.084*
H23C0.21080.72470.34630.084*
U11U22U33U12U13U23
O10.1151 (11)0.0470 (7)0.0734 (9)−0.0257 (7)0.0398 (8)−0.0030 (6)
O20.0485 (6)0.0427 (5)0.0449 (5)−0.0134 (4)0.0257 (5)−0.0075 (4)
O30.0559 (6)0.0680 (7)0.0351 (5)−0.0186 (5)0.0224 (5)−0.0079 (5)
O40.0676 (7)0.0338 (5)0.0467 (6)−0.0063 (5)0.0280 (5)0.0051 (4)
O50.0652 (7)0.0502 (6)0.0614 (7)−0.0137 (5)0.0441 (6)−0.0232 (5)
N10.0515 (7)0.0253 (5)0.0403 (6)−0.0041 (5)0.0232 (5)−0.0089 (4)
C10.0697 (10)0.0489 (9)0.0525 (9)−0.0152 (8)0.0315 (8)−0.0069 (7)
C20.0436 (7)0.0406 (7)0.0456 (8)−0.0052 (6)0.0258 (6)−0.0029 (6)
C30.0428 (7)0.0473 (8)0.0339 (7)−0.0055 (6)0.0155 (6)−0.0003 (6)
C40.0345 (6)0.0408 (7)0.0354 (7)−0.0020 (5)0.0153 (6)0.0017 (5)
C50.0294 (6)0.0405 (7)0.0348 (7)0.0003 (5)0.0155 (5)0.0020 (5)
C60.0354 (7)0.0472 (8)0.0378 (7)0.0017 (6)0.0120 (6)0.0091 (6)
C70.0413 (7)0.0381 (7)0.0512 (8)0.0016 (6)0.0226 (7)0.0088 (6)
C80.0334 (6)0.0463 (8)0.0329 (7)−0.0039 (6)0.0133 (5)0.0013 (6)
C90.0367 (7)0.0406 (7)0.0400 (7)−0.0073 (6)0.0194 (6)−0.0045 (6)
C100.0502 (8)0.0401 (8)0.0460 (8)−0.0035 (6)0.0150 (7)0.0094 (6)
C110.0486 (8)0.0484 (8)0.0344 (7)−0.0061 (7)0.0062 (6)0.0068 (6)
C120.0347 (6)0.0360 (7)0.0320 (6)−0.0002 (5)0.0129 (5)0.0054 (5)
C130.0392 (7)0.0280 (6)0.0387 (7)0.0009 (5)0.0182 (6)0.0028 (5)
C140.0540 (9)0.0398 (8)0.0697 (11)0.0108 (7)0.0262 (8)0.0125 (7)
C150.0438 (7)0.0304 (6)0.0418 (7)−0.0015 (5)0.0259 (6)−0.0060 (5)
C160.0458 (7)0.0309 (6)0.0289 (6)−0.0017 (5)0.0179 (6)−0.0042 (5)
C170.0394 (7)0.0328 (6)0.0356 (7)−0.0032 (5)0.0146 (6)−0.0097 (5)
C180.0382 (7)0.0320 (6)0.0394 (7)−0.0071 (5)0.0212 (6)−0.0095 (5)
C190.0484 (8)0.0291 (6)0.0396 (7)−0.0067 (5)0.0229 (6)0.0000 (5)
C200.0409 (7)0.0285 (6)0.0294 (6)0.0013 (5)0.0121 (5)0.0024 (5)
C210.0368 (7)0.0350 (7)0.0398 (7)−0.0035 (5)0.0192 (6)−0.0096 (5)
C220.0745 (11)0.0542 (9)0.0339 (7)−0.0095 (8)0.0272 (7)−0.0063 (7)
C230.0519 (9)0.0570 (9)0.0674 (10)−0.0215 (7)0.0370 (8)−0.0208 (8)
O1—C11.2031 (19)C12—C131.5267 (18)
O2—C121.3569 (15)C13—C151.5358 (18)
O2—C91.4071 (16)C13—C191.5363 (18)
O3—C121.1971 (16)C13—C141.5477 (19)
O4—C201.2136 (15)C14—H14A0.9600
O5—C211.2132 (15)C14—H14B0.9600
N1—C211.3828 (17)C14—H14C0.9600
N1—C201.3822 (17)C15—C161.5473 (18)
N1—H220.8701C15—H15A0.9700
C1—C21.475 (2)C15—H15B0.9700
C1—H10.9300C16—C201.5218 (17)
C2—C31.3707 (19)C16—C171.5264 (19)
C2—C71.411 (2)C16—C221.5284 (18)
C3—C41.4115 (19)C17—C181.5266 (18)
C3—H30.9300C17—H17A0.9700
C4—C111.4138 (19)C17—H17B0.9700
C4—C51.4199 (18)C18—C211.5177 (17)
C5—C81.4118 (18)C18—C231.5289 (19)
C5—C61.4169 (18)C18—C191.5388 (19)
C6—C71.356 (2)C19—H19A0.9700
C6—H60.9300C19—H19B0.9700
C7—H70.9300C22—H22A0.9600
C8—C91.3542 (19)C22—H22B0.9600
C8—H80.9300C22—H22C0.9600
C9—C101.400 (2)C23—H23A0.9600
C10—C111.363 (2)C23—H23B0.9600
C10—H100.9300C23—H23C0.9600
C11—H110.9300
C12—O2—C9119.29 (10)H14A—C14—H14C109.5
C21—N1—C20127.75 (10)H14B—C14—H14C109.5
C21—N1—H22115.3C13—C15—C16116.17 (10)
C20—N1—H22116.7C13—C15—H15A108.2
O1—C1—C2124.44 (16)C16—C15—H15A108.2
O1—C1—H1117.8C13—C15—H15B108.2
C2—C1—H1117.8C16—C15—H15B108.2
C3—C2—C7119.69 (13)H15A—C15—H15B107.4
C3—C2—C1119.70 (13)C20—C16—C17108.48 (10)
C7—C2—C1120.56 (13)C20—C16—C22109.31 (11)
C2—C3—C4121.31 (13)C17—C16—C22111.87 (11)
C2—C3—H3119.3C20—C16—C15109.00 (10)
C4—C3—H3119.3C17—C16—C15109.17 (10)
C3—C4—C11123.08 (12)C22—C16—C15108.96 (11)
C3—C4—C5118.67 (12)C16—C17—C18110.81 (10)
C11—C4—C5118.26 (12)C16—C17—H17A109.5
C8—C5—C6122.23 (12)C18—C17—H17A109.5
C8—C5—C4119.16 (12)C16—C17—H17B109.5
C6—C5—C4118.61 (12)C18—C17—H17B109.5
C7—C6—C5121.33 (12)H17A—C17—H17B108.1
C7—C6—H6119.3C21—C18—C17109.17 (10)
C5—C6—H6119.3C21—C18—C23108.94 (11)
C6—C7—C2120.38 (12)C17—C18—C23111.52 (11)
C6—C7—H7119.8C21—C18—C19108.07 (10)
C2—C7—H7119.8C17—C18—C19109.68 (10)
C9—C8—C5119.91 (12)C23—C18—C19109.38 (12)
C9—C8—H8120.0C13—C19—C18115.92 (10)
C5—C8—H8120.0C13—C19—H19A108.3
C8—C9—C10122.17 (12)C18—C19—H19A108.3
C8—C9—O2116.93 (12)C13—C19—H19B108.3
C10—C9—O2120.76 (12)C18—C19—H19B108.3
C11—C10—C9118.73 (13)H19A—C19—H19B107.4
C11—C10—H10120.6O4—C20—N1119.48 (11)
C9—C10—H10120.6O4—C20—C16123.81 (12)
C10—C11—C4121.71 (13)N1—C20—C16116.71 (10)
C10—C11—H11119.1O5—C21—N1120.38 (11)
C4—C11—H11119.1O5—C21—C18122.93 (12)
O3—C12—O2123.39 (12)N1—C21—C18116.66 (11)
O3—C12—C13125.33 (12)C16—C22—H22A109.5
O2—C12—C13111.13 (11)C16—C22—H22B109.5
C12—C13—C15113.79 (10)H22A—C22—H22B109.5
C12—C13—C19110.93 (10)C16—C22—H22C109.5
C15—C13—C19109.93 (11)H22A—C22—H22C109.5
C12—C13—C14103.54 (11)H22B—C22—H22C109.5
C15—C13—C14109.47 (11)C18—C23—H23A109.5
C19—C13—C14108.91 (11)C18—C23—H23B109.5
C13—C14—H14A109.5H23A—C23—H23B109.5
C13—C14—H14B109.5C18—C23—H23C109.5
H14A—C14—H14B109.5H23A—C23—H23C109.5
C13—C14—H14C109.5H23B—C23—H23C109.5
O1—C1—C2—C3175.94 (17)C12—C13—C15—C16−79.40 (14)
O1—C1—C2—C7−1.4 (3)C19—C13—C15—C1645.71 (14)
C7—C2—C3—C4−0.3 (2)C14—C13—C15—C16165.31 (11)
C1—C2—C3—C4−177.65 (13)C13—C15—C16—C2064.94 (14)
C2—C3—C4—C11179.38 (14)C13—C15—C16—C17−53.40 (14)
C2—C3—C4—C5−0.3 (2)C13—C15—C16—C22−175.85 (11)
C3—C4—C5—C8−178.46 (12)C20—C16—C17—C18−59.52 (13)
C11—C4—C5—C81.79 (19)C22—C16—C17—C18179.83 (11)
C3—C4—C5—C61.19 (19)C15—C16—C17—C1859.14 (13)
C11—C4—C5—C6−178.56 (13)C16—C17—C18—C2158.72 (13)
C8—C5—C6—C7178.15 (13)C16—C17—C18—C23179.15 (11)
C4—C5—C6—C7−1.5 (2)C16—C17—C18—C19−59.53 (13)
C5—C6—C7—C20.9 (2)C12—C13—C19—C1881.06 (13)
C3—C2—C7—C60.0 (2)C15—C13—C19—C18−45.66 (14)
C1—C2—C7—C6177.36 (13)C14—C13—C19—C18−165.61 (12)
C6—C5—C8—C9179.57 (13)C21—C18—C19—C13−65.35 (14)
C4—C5—C8—C9−0.79 (19)C17—C18—C19—C1353.57 (14)
C5—C8—C9—C10−1.3 (2)C23—C18—C19—C13176.18 (11)
C5—C8—C9—O2−177.05 (11)C21—N1—C20—O4178.38 (13)
C12—O2—C9—C8−121.10 (13)C21—N1—C20—C16−2.65 (19)
C12—O2—C9—C1063.13 (17)C17—C16—C20—O4−150.00 (13)
C8—C9—C10—C112.4 (2)C22—C16—C20—O4−27.77 (19)
O2—C9—C10—C11177.95 (13)C15—C16—C20—O491.23 (15)
C9—C10—C11—C4−1.3 (2)C17—C16—C20—N131.08 (15)
C3—C4—C11—C10179.53 (15)C22—C16—C20—N1153.30 (12)
C5—C4—C11—C10−0.7 (2)C15—C16—C20—N1−87.70 (14)
C9—O2—C12—O3−3.89 (19)C20—N1—C21—O5179.58 (13)
C9—O2—C12—C13−179.69 (11)C20—N1—C21—C181.5 (2)
O3—C12—C13—C15150.90 (13)C17—C18—C21—O5152.91 (13)
O2—C12—C13—C15−33.39 (14)C23—C18—C21—O530.91 (18)
O3—C12—C13—C1926.33 (18)C19—C18—C21—O5−87.84 (15)
O2—C12—C13—C19−157.96 (10)C17—C18—C21—N1−29.08 (16)
O3—C12—C13—C14−90.35 (16)C23—C18—C21—N1−151.08 (13)
O2—C12—C13—C1485.35 (13)C19—C18—C21—N190.17 (14)
D—H···AD—HH···AD···AD—H···A
N1—H22···O5i0.872.022.8776 (14)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H22⋯O5i0.872.022.8776 (14)166

Symmetry code: (i) .

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Authors:  Shengguang Xu; Nicolas Giuseppone
Journal:  J Am Chem Soc       Date:  2008-01-23       Impact factor: 15.419

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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