Literature DB >> 21580115

Tetra-kis(3,5-xylidinium) dihydrogen cyclo-hexa-phosphate dihydrate.

Houda Marouani1, Mohamed Rzaigui.   

Abstract

In the title compound, 4C(8)H(12)N(+)·H(2)P(6)O(18) (4-)·2H(2)O, the complete cyclo-hexa-phosphate anion is generated by inversion symmetry. Crystal cohesion and stability are supported by electrostatic inter-actions which, together with N-H⋯O and O-H⋯O hydrogen bonds, build up a three-dimensional network.

Entities:  

Year:  2009        PMID: 21580115      PMCID: PMC2980186          DOI: 10.1107/S1600536809054452

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Khederi et al. (2001 ▶); Rayes et al. (2004 ▶); Amri et al. (2008 ▶); Janiak et al. (2000 ▶). For a discussion on hydrogen bonding, see: Brown (1976 ▶). For tetra­hedral distortions, see: Baur (1974 ▶). For the preparation of cyclo­hexa­phospho­ric acid, see: Schülke & Kayser (1985 ▶).

Experimental

Crystal data

4C8H12N+·H2P6O18 4−·2H2O M = 1000.61 Monoclinic, a = 17.254 (3) Å b = 11.763 (5) Å c = 11.556 (2) Å β = 106.41 (3)° V = 2249.9 (11) Å3 Z = 2 Mo Kα radiation μ = 0.32 mm−1 T = 293 K 0.35 × 0.20 × 0.01 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 10097 measured reflections 9844 independent reflections 5567 reflections with I > 2σ(I) R int = 0.039 2 standard reflections every 120 min intensity decay: 11%

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.141 S = 1.02 9844 reflections 295 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.50 e Å−3 Δρmin = −0.51 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS86 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809054452/hb5267sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809054452/hb5267Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
4C8H12N+·H2P6O184·2H2OF(000) = 1048
Mr = 1000.61Dx = 1.477 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 17.254 (3) Åθ = 6.3–10.1°
b = 11.763 (5) ŵ = 0.32 mm1
c = 11.556 (2) ÅT = 293 K
β = 106.41 (3)°Prism, colourless
V = 2249.9 (11) Å30.35 × 0.20 × 0.01 mm
Z = 2
Enraf–Nonius CAD-4 diffractometerRint = 0.039
Radiation source: Enraf Nonius FR590θmax = 35.0°, θmin = 3.0°
graphiteh = 0→27
non–profiled ω scansk = −18→0
10097 measured reflectionsl = −18→17
9844 independent reflections2 standard reflections every 120 min
5567 reflections with I > 2σ(I) intensity decay: 11%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.141H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0664P)2 + 0.0078P] where P = (Fo2 + 2Fc2)/3
9844 reflections(Δ/σ)max = 0.001
295 parametersΔρmax = 0.50 e Å3
3 restraintsΔρmin = −0.51 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.00136 (3)0.52037 (4)0.73695 (4)0.02425 (10)
P20.09276 (3)0.68827 (4)0.63729 (4)0.02327 (10)
P30.13602 (3)0.55149 (4)0.45087 (4)0.02452 (10)
O1−0.04452 (9)0.43770 (12)0.62693 (12)0.0358 (3)
O2−0.05542 (9)0.55967 (13)0.80125 (13)0.0383 (3)
O30.07729 (8)0.46237 (12)0.80005 (12)0.0331 (3)
O40.01792 (9)0.62742 (15)0.66154 (17)0.0516 (5)
O50.06005 (9)0.77774 (12)0.54796 (13)0.0355 (3)
O60.15290 (10)0.71634 (14)0.75342 (13)0.0463 (4)
O70.13336 (10)0.58897 (13)0.58091 (12)0.0411 (4)
O80.18549 (10)0.63572 (15)0.40517 (15)0.0470 (4)
H80.15630.67030.34760.071*
O90.16580 (8)0.43352 (11)0.46188 (12)0.0299 (3)
O1W0.10923 (9)0.23683 (13)0.55367 (13)0.0350 (3)
H2W0.1207 (13)0.3026 (12)0.534 (2)0.049 (8)*
H1W0.0587 (6)0.226 (2)0.535 (2)0.051 (8)*
N10.15651 (10)0.26040 (14)0.80220 (14)0.0286 (3)
H1A0.15450.19740.84380.043*
H1B0.14440.24390.72400.043*
H1C0.12110.31070.81460.043*
N20.13845 (10)0.97750 (14)0.54343 (15)0.0330 (3)
H2A0.12911.00560.46920.050*
H2B0.12251.02750.58990.050*
H2C0.11110.91290.54080.050*
C10.23806 (11)0.30866 (16)0.84216 (16)0.0277 (3)
C20.26029 (13)0.38692 (18)0.76896 (19)0.0374 (5)
H20.22420.40770.69580.045*
C30.33672 (15)0.4345 (2)0.8052 (2)0.0442 (5)
C40.38869 (14)0.4024 (2)0.9153 (2)0.0448 (5)
H40.44010.43420.93970.054*
C50.36648 (13)0.3244 (2)0.9902 (2)0.0389 (5)
C60.28937 (12)0.27755 (18)0.95214 (18)0.0338 (4)
H60.27260.22551.00070.041*
C70.3613 (2)0.5219 (3)0.7259 (3)0.0738 (10)
H7A0.33670.59360.73360.111*
H7B0.34380.49740.64340.111*
H7C0.41900.53010.75050.111*
C80.42344 (16)0.2895 (3)1.1093 (2)0.0611 (8)
H8A0.45520.22591.09730.092*
H8B0.39300.26831.16380.092*
H8C0.45840.35191.14280.092*
C90.22502 (12)0.95537 (16)0.59349 (17)0.0301 (4)
C100.26548 (14)0.99879 (18)0.70482 (18)0.0376 (5)
H100.23871.04540.74600.045*
C110.34615 (15)0.9726 (2)0.7550 (2)0.0457 (5)
C120.38358 (15)0.9013 (2)0.6916 (2)0.0508 (6)
H120.43760.88230.72530.061*
C130.34264 (15)0.8571 (2)0.5790 (2)0.0454 (5)
C140.26241 (14)0.88654 (19)0.5298 (2)0.0391 (5)
H140.23400.85980.45400.047*
C150.3918 (2)1.0199 (3)0.8766 (3)0.0760 (10)
H15A0.40731.09700.86740.114*
H15B0.43920.97490.91010.114*
H15C0.35791.01790.92960.114*
C160.3838 (2)0.7769 (3)0.5129 (3)0.0766 (10)
H16A0.34640.71930.47310.115*
H16B0.42930.74190.56950.115*
H16C0.40210.81860.45420.115*
U11U22U33U12U13U23
P10.0263 (2)0.0223 (2)0.0234 (2)0.00168 (17)0.00594 (16)0.00207 (16)
P20.0260 (2)0.01997 (19)0.02237 (19)−0.00016 (16)0.00439 (16)−0.00186 (15)
P30.0315 (2)0.0211 (2)0.01944 (19)0.00324 (17)0.00459 (17)−0.00015 (15)
O10.0347 (7)0.0350 (7)0.0313 (7)0.0121 (6)−0.0010 (6)−0.0107 (6)
O20.0436 (8)0.0418 (8)0.0324 (7)0.0089 (7)0.0154 (6)−0.0037 (6)
O30.0305 (7)0.0324 (7)0.0315 (7)0.0082 (6)0.0007 (5)0.0033 (5)
O40.0324 (8)0.0516 (10)0.0708 (11)0.0029 (7)0.0147 (8)0.0358 (9)
O50.0356 (7)0.0252 (6)0.0419 (8)0.0001 (6)0.0045 (6)0.0094 (6)
O60.0525 (10)0.0407 (9)0.0335 (8)0.0069 (7)−0.0078 (7)−0.0156 (6)
O70.0591 (10)0.0392 (8)0.0218 (6)0.0212 (7)0.0061 (6)−0.0037 (6)
O80.0470 (9)0.0448 (9)0.0454 (9)−0.0054 (8)0.0066 (7)0.0210 (7)
O90.0348 (7)0.0230 (6)0.0306 (6)0.0049 (5)0.0073 (5)−0.0017 (5)
O1W0.0338 (8)0.0331 (8)0.0359 (7)−0.0025 (6)0.0064 (6)0.0061 (6)
N10.0291 (8)0.0261 (7)0.0294 (7)−0.0014 (6)0.0061 (6)−0.0001 (6)
N20.0352 (9)0.0279 (8)0.0350 (8)−0.0015 (7)0.0085 (7)0.0026 (7)
C10.0264 (8)0.0258 (8)0.0294 (8)−0.0014 (7)0.0055 (7)−0.0015 (7)
C20.0392 (11)0.0373 (11)0.0323 (10)−0.0051 (9)0.0044 (8)0.0045 (8)
C30.0442 (12)0.0455 (13)0.0428 (12)−0.0135 (10)0.0122 (10)0.0040 (10)
C40.0312 (11)0.0496 (13)0.0508 (13)−0.0097 (10)0.0067 (10)−0.0007 (11)
C50.0313 (10)0.0422 (12)0.0380 (11)0.0008 (9)0.0015 (8)−0.0005 (9)
C60.0322 (10)0.0350 (10)0.0324 (9)−0.0008 (8)0.0059 (8)0.0036 (8)
C70.071 (2)0.080 (2)0.0672 (19)−0.0334 (17)0.0143 (16)0.0215 (16)
C80.0433 (14)0.078 (2)0.0486 (14)−0.0039 (13)−0.0086 (11)0.0127 (13)
C90.0334 (9)0.0254 (8)0.0316 (9)−0.0034 (7)0.0091 (7)0.0019 (7)
C100.0438 (12)0.0372 (11)0.0306 (9)0.0016 (9)0.0087 (9)−0.0024 (8)
C110.0446 (12)0.0513 (14)0.0341 (11)−0.0006 (11)−0.0003 (9)−0.0010 (10)
C120.0362 (12)0.0537 (15)0.0579 (15)0.0039 (11)0.0057 (11)0.0023 (12)
C130.0438 (12)0.0412 (12)0.0558 (14)−0.0026 (10)0.0217 (11)−0.0076 (11)
C140.0423 (12)0.0380 (11)0.0377 (10)−0.0082 (9)0.0124 (9)−0.0095 (9)
C150.070 (2)0.090 (2)0.0484 (15)0.0066 (18)−0.0148 (14)−0.0129 (16)
C160.0589 (18)0.082 (2)0.098 (3)0.0113 (17)0.0369 (18)−0.028 (2)
P1—O21.4619 (15)C3—C71.515 (3)
P1—O31.4744 (14)C4—C51.388 (3)
P1—O41.6024 (16)C4—H40.9300
P1—O11.6187 (15)C5—C61.392 (3)
P2—O51.4706 (15)C5—C81.505 (3)
P2—O61.4832 (15)C6—H60.9300
P2—O41.5692 (16)C7—H7A0.9600
P2—O71.5930 (15)C7—H7B0.9600
P3—O91.4728 (15)C7—H7C0.9600
P3—O81.4980 (16)C8—H8A0.9600
P3—O71.5790 (14)C8—H8B0.9600
P3—O1i1.5859 (15)C8—H8C0.9600
O1—P3i1.5859 (15)C9—C141.371 (3)
O8—H80.8200C9—C101.377 (3)
O1W—H2W0.847 (9)C10—C111.383 (3)
O1W—H1W0.846 (9)C10—H100.9300
N1—C11.466 (2)C11—C121.387 (4)
N1—H1A0.8900C11—C151.510 (3)
N1—H1B0.8900C12—C131.393 (3)
N1—H1C0.8900C12—H120.9300
N2—C91.465 (3)C13—C141.384 (3)
N2—H2A0.8900C13—C161.512 (4)
N2—H2B0.8900C14—H140.9300
N2—H2C0.8900C15—H15A0.9600
C1—C21.376 (3)C15—H15B0.9600
C1—C61.377 (3)C15—H15C0.9600
C2—C31.384 (3)C16—H16A0.9600
C2—H20.9300C16—H16B0.9600
C3—C41.386 (3)C16—H16C0.9600
O2—P1—O3121.63 (9)C4—C5—C8121.8 (2)
O2—P1—O4106.02 (10)C6—C5—C8120.0 (2)
O3—P1—O4111.25 (9)C1—C6—C5119.6 (2)
O2—P1—O1109.87 (9)C1—C6—H6120.2
O3—P1—O1106.24 (8)C5—C6—H6120.2
O4—P1—O199.66 (10)C3—C7—H7A109.5
O5—P2—O6120.50 (10)C3—C7—H7B109.5
O5—P2—O4106.25 (9)H7A—C7—H7B109.5
O6—P2—O4109.92 (11)C3—C7—H7C109.5
O5—P2—O7111.32 (9)H7A—C7—H7C109.5
O6—P2—O7104.90 (9)H7B—C7—H7C109.5
O4—P2—O7102.57 (10)C5—C8—H8A109.5
O9—P3—O8115.72 (10)C5—C8—H8B109.5
O9—P3—O7106.50 (8)H8A—C8—H8B109.5
O8—P3—O7108.87 (10)C5—C8—H8C109.5
O9—P3—O1i113.06 (8)H8A—C8—H8C109.5
O8—P3—O1i108.80 (9)H8B—C8—H8C109.5
O7—P3—O1i103.02 (9)C14—C9—C10121.9 (2)
P3i—O1—P1125.79 (9)C14—C9—N2118.34 (18)
P2—O4—P1137.54 (11)C10—C9—N2119.63 (18)
P3—O7—P2136.74 (10)C9—C10—C11119.6 (2)
P3—O8—H8109.5C9—C10—H10120.2
H2W—O1W—H1W111.4 (19)C11—C10—H10120.2
C1—N1—H1A109.5C10—C11—C12118.5 (2)
C1—N1—H1B109.5C10—C11—C15120.4 (2)
H1A—N1—H1B109.5C12—C11—C15121.1 (2)
C1—N1—H1C109.5C11—C12—C13122.0 (2)
H1A—N1—H1C109.5C11—C12—H12119.0
H1B—N1—H1C109.5C13—C12—H12119.0
C9—N2—H2A109.5C14—C13—C12118.4 (2)
C9—N2—H2B109.5C14—C13—C16120.5 (2)
H2A—N2—H2B109.5C12—C13—C16121.2 (2)
C9—N2—H2C109.5C9—C14—C13119.6 (2)
H2A—N2—H2C109.5C9—C14—H14120.2
H2B—N2—H2C109.5C13—C14—H14120.2
C2—C1—C6121.79 (18)C11—C15—H15A109.5
C2—C1—N1118.35 (17)C11—C15—H15B109.5
C6—C1—N1119.83 (17)H15A—C15—H15B109.5
C1—C2—C3119.47 (19)C11—C15—H15C109.5
C1—C2—H2120.3H15A—C15—H15C109.5
C3—C2—H2120.3H15B—C15—H15C109.5
C2—C3—C4118.8 (2)C13—C16—H16A109.5
C2—C3—C7119.8 (2)C13—C16—H16B109.5
C4—C3—C7121.4 (2)H16A—C16—H16B109.5
C3—C4—C5122.1 (2)C13—C16—H16C109.5
C3—C4—H4118.9H16A—C16—H16C109.5
C5—C4—H4118.9H16B—C16—H16C109.5
C4—C5—C6118.2 (2)
D—H···AD—HH···AD···AD—H···A
O8—H8···O6ii0.821.712.421 (2)144
O1W—H2W···O90.85 (1)2.01 (1)2.831 (2)164 (2)
O1W—H1W···O5i0.85 (1)2.00 (1)2.829 (2)165 (2)
N1—H1A···O9iii0.892.032.910 (2)170
N1—H1B···O1W0.891.892.769 (2)169
N1—H1C···O30.891.932.738 (2)151
N2—H2A···O3ii0.891.942.801 (2)161
N2—H2B···O2iv0.891.972.768 (2)148
N2—H2C···O50.891.832.719 (2)175
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O8—H8⋯O6i0.821.712.421 (2)144
O1W—H2W⋯O90.85 (1)2.01 (1)2.831 (2)164 (2)
O1W—H1W⋯O5ii0.85 (1)2.00 (1)2.829 (2)165 (2)
N1—H1A⋯O9iii0.892.032.910 (2)170
N1—H1B⋯O1W0.891.892.769 (2)169
N1—H1C⋯O30.891.932.738 (2)151
N2—H2A⋯O3i0.891.942.801 (2)161
N2—H2B⋯O2iv0.891.972.768 (2)148
N2—H2C⋯O50.891.832.719 (2)175

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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