Literature DB >> 21580105

2-[3-(Methyl-diphenyl-silyl)prop-yl]isoindoline-1,3-dione.

Ilia A Guzei1, Lara C Spencer, Uzma I Zakai, Daniel C Lynch.   

Abstract

In the title compound, C(24)H(23)NO(2)Si, the dihedral angle between the planes of the phenyl rings attached to the Si atom is 80.78 (10)°. In the crystal, the mol-ecules form sheets lying perpendicular to [101] via C-H⋯O inter-actions. These sheets are stacked and linked in a three-dimensional framework by additional C-H⋯O inter-actions in the [10] direction.

Entities:  

Year:  2009        PMID: 21580105      PMCID: PMC2980052          DOI: 10.1107/S1600536809054117

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For literature related to drug design see: Bains & Tacke (2003 ▶); Gately & West (2007 ▶); Guzei et al. (2010a ▶,b ▶); Lee et al. (1996 ▶); Tsuge et al. (1985 ▶); Yoon et al. (1991 ▶); Zakai et al. (2010 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶). Bond distances and angles were confirmed to be typical by a Mogul structural check (Bruno et al., 2002 ▶).

Experimental

Crystal data

C24H23NO2Si M = 385.52 Monoclinic, a = 19.277 (3) Å b = 13.238 (2) Å c = 19.272 (3) Å β = 116.987 (6)° V = 4382.5 (12) Å3 Z = 8 Mo Kα radiation μ = 0.13 mm−1 T = 300 K 0.30 × 0.30 × 0.30 mm

Data collection

Bruker SMART X2S diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.964, T max = 0.964 15551 measured reflections 4470 independent reflections 2693 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.175 S = 1.02 4470 reflections 254 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 and GIS (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL, OLEX2 (Dolomanov et al., 2009 ▶) and FCF_filter (Guzei, 2007 ▶); molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL, modiCIFer (Guzei, 2007 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809054117/zs2024sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809054117/zs2024Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H23NO2SiF(000) = 1632
Mr = 385.52Dx = 1.169 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3839 reflections
a = 19.277 (3) Åθ = 2.4–22.8°
b = 13.238 (2) ŵ = 0.13 mm1
c = 19.272 (3) ÅT = 300 K
β = 116.987 (6)°Block, colourless
V = 4382.5 (12) Å30.30 × 0.30 × 0.30 mm
Z = 8
Bruker SMART X2S diffractometer4470 independent reflections
Radiation source: micro-focus sealed tube2693 reflections with I > 2σ(I)
doubly curved silicon crystalRint = 0.051
ω scansθmax = 26.5°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −23→21
Tmin = 0.964, Tmax = 0.964k = −16→16
15551 measured reflectionsl = −20→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.175H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.102P)2] where P = (Fo2 + 2Fc2)/3
4470 reflections(Δ/σ)max < 0.001
254 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.22 e Å3
0 constraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Si10.49123 (4)0.69714 (5)0.07188 (4)0.0625 (2)
O10.22870 (10)0.74572 (11)0.13602 (10)0.0738 (5)
O20.28657 (14)0.41221 (13)0.16823 (14)0.1108 (8)
N10.26255 (10)0.57953 (12)0.13731 (11)0.0566 (5)
C10.52300 (14)0.67920 (17)−0.00584 (15)0.0653 (6)
C20.47118 (17)0.6588 (2)−0.08206 (16)0.0812 (8)
H20.41860.6520−0.09560.097*
C30.4956 (2)0.6483 (2)−0.13887 (18)0.0995 (10)
H30.45930.6351−0.19000.119*
C40.5722 (2)0.6569 (2)−0.1209 (2)0.0993 (10)
H40.58810.6496−0.15960.119*
C50.6249 (2)0.6761 (2)−0.0473 (2)0.0980 (10)
H50.67730.6816−0.03490.118*
C60.60125 (16)0.6874 (2)0.01005 (19)0.0855 (8)
H60.63840.70100.06080.103*
C70.47864 (13)0.8354 (2)0.08261 (14)0.0651 (6)
C80.5175 (2)0.8887 (3)0.15175 (19)0.1228 (12)
H80.55050.85410.19670.147*
C90.5085 (3)0.9920 (4)0.1554 (3)0.1427 (17)
H90.53621.02560.20250.171*
C100.4601 (2)1.0448 (3)0.0918 (3)0.1084 (12)
H100.45341.11390.090500.130*
C110.42195 (19)0.9959 (2)0.0240 (2)0.1046 (10)
H110.38881.0313−0.02050.126*
C120.43174 (16)0.8933 (2)0.01984 (18)0.0872 (8)
H120.40500.8617−0.02820.105*
C130.56729 (17)0.6463 (3)0.16613 (16)0.1021 (10)
H13A0.61510.68230.18080.153*
H13B0.57530.57580.16030.153*
H13C0.55060.65450.20570.153*
C140.39646 (13)0.63048 (18)0.04274 (12)0.0603 (6)
H14A0.35680.6634−0.00300.072*
H14B0.40140.56160.02840.072*
C150.36934 (13)0.62798 (19)0.10561 (13)0.0630 (6)
H15A0.40530.58730.14890.076*
H15B0.37040.69600.12470.076*
C160.28795 (13)0.58526 (18)0.07650 (14)0.0635 (6)
H16A0.25180.62730.03440.076*
H16B0.28650.51810.05570.076*
C170.23600 (12)0.66153 (16)0.16301 (13)0.0539 (5)
C180.21922 (11)0.62472 (16)0.22621 (13)0.0542 (5)
C190.19309 (15)0.67446 (19)0.27256 (16)0.0721 (7)
H190.18100.74290.26580.086*
C200.18555 (18)0.6191 (2)0.32939 (17)0.0896 (8)
H200.16810.65080.36160.108*
C210.2033 (2)0.5187 (3)0.33913 (19)0.0996 (10)
H210.19740.48310.37770.120*
C220.22994 (18)0.4688 (2)0.29304 (19)0.0908 (9)
H220.24240.40050.30020.109*
C230.23748 (13)0.52346 (17)0.23615 (15)0.0636 (6)
C240.26513 (14)0.49367 (18)0.17894 (16)0.0691 (7)
U11U22U33U12U13U23
Si10.0530 (4)0.0846 (5)0.0515 (4)0.0067 (3)0.0251 (3)0.0098 (3)
O10.0954 (13)0.0496 (10)0.0769 (11)0.0033 (8)0.0396 (10)0.0045 (8)
O20.158 (2)0.0577 (11)0.180 (2)0.0346 (11)0.1325 (19)0.0264 (12)
N10.0634 (11)0.0494 (10)0.0682 (11)0.0020 (8)0.0397 (10)0.0031 (9)
C10.0648 (15)0.0681 (15)0.0721 (16)0.0150 (11)0.0390 (13)0.0143 (12)
C20.0806 (18)0.105 (2)0.0716 (17)0.0091 (15)0.0464 (15)0.0002 (15)
C30.124 (3)0.115 (2)0.078 (2)0.015 (2)0.062 (2)−0.0006 (17)
C40.128 (3)0.096 (2)0.118 (3)0.030 (2)0.095 (3)0.017 (2)
C50.089 (2)0.101 (2)0.137 (3)0.0220 (17)0.079 (2)0.024 (2)
C60.0721 (18)0.106 (2)0.094 (2)0.0130 (14)0.0510 (16)0.0172 (16)
C70.0525 (13)0.0877 (17)0.0616 (14)−0.0116 (11)0.0314 (12)−0.0121 (12)
C80.155 (3)0.119 (3)0.073 (2)−0.012 (2)0.033 (2)−0.0198 (19)
C90.204 (5)0.115 (3)0.110 (3)−0.040 (3)0.072 (3)−0.056 (3)
C100.114 (3)0.086 (2)0.155 (4)−0.017 (2)0.087 (3)−0.035 (2)
C110.082 (2)0.079 (2)0.132 (3)−0.0013 (16)0.031 (2)−0.014 (2)
C120.0730 (17)0.0759 (19)0.088 (2)−0.0038 (14)0.0153 (15)−0.0160 (15)
C130.0762 (19)0.147 (3)0.0691 (18)0.0160 (18)0.0204 (16)0.0311 (18)
C140.0647 (14)0.0678 (14)0.0523 (12)0.0030 (11)0.0300 (11)0.0069 (10)
C150.0629 (14)0.0735 (15)0.0577 (13)−0.0023 (11)0.0318 (12)0.0032 (11)
C160.0670 (15)0.0629 (14)0.0661 (15)−0.0037 (11)0.0349 (13)−0.0027 (11)
C170.0511 (12)0.0451 (12)0.0595 (13)−0.0003 (9)0.0198 (10)−0.0006 (10)
C180.0479 (12)0.0533 (12)0.0636 (13)−0.0007 (9)0.0272 (11)−0.0002 (10)
C190.0773 (17)0.0658 (15)0.0805 (17)0.0008 (12)0.0422 (15)−0.0088 (13)
C200.101 (2)0.101 (2)0.090 (2)0.0022 (17)0.0634 (18)−0.0063 (17)
C210.117 (3)0.112 (3)0.101 (2)0.0117 (19)0.077 (2)0.0269 (19)
C220.104 (2)0.0776 (18)0.121 (2)0.0234 (15)0.078 (2)0.0353 (17)
C230.0628 (14)0.0561 (13)0.0859 (16)0.0079 (10)0.0461 (13)0.0131 (12)
C240.0741 (16)0.0513 (14)0.1020 (19)0.0119 (11)0.0577 (15)0.0121 (12)
Si1—C131.867 (3)C10—H100.9300
Si1—C71.870 (3)C11—C121.378 (4)
Si1—C141.871 (2)C11—H110.9300
Si1—C11.873 (3)C12—H120.9300
O1—C171.211 (2)C13—H13A0.9600
O2—C241.206 (3)C13—H13B0.9600
N1—C241.379 (3)C13—H13C0.9600
N1—C171.384 (3)C14—C151.522 (3)
N1—C161.463 (3)C14—H14A0.9700
C1—C21.377 (4)C14—H14B0.9700
C1—C61.401 (4)C15—C161.516 (3)
C2—C31.381 (4)C15—H15A0.9700
C2—H20.9300C15—H15B0.9700
C3—C41.360 (4)C16—H16A0.9700
C3—H30.9300C16—H16B0.9700
C4—C51.342 (5)C17—C181.478 (3)
C4—H40.9300C18—C191.376 (3)
C5—C61.382 (4)C18—C231.377 (3)
C5—H50.9300C19—C201.379 (4)
C6—H60.9300C19—H190.9300
C7—C121.369 (4)C20—C211.364 (4)
C7—C81.389 (4)C20—H200.9300
C8—C91.384 (5)C21—C221.379 (4)
C8—H80.9300C21—H210.9300
C9—C101.351 (5)C22—C231.375 (3)
C9—H90.9300C22—H220.9300
C10—C111.340 (5)C23—C241.479 (3)
C13—Si1—C7109.25 (14)H13A—C13—H13B109.5
C13—Si1—C14110.53 (12)Si1—C13—H13C109.5
C7—Si1—C14109.68 (11)H13A—C13—H13C109.5
C13—Si1—C1109.56 (13)H13B—C13—H13C109.5
C7—Si1—C1108.56 (10)C15—C14—Si1114.37 (15)
C14—Si1—C1109.22 (11)C15—C14—H14A108.7
C24—N1—C17111.09 (19)Si1—C14—H14A108.7
C24—N1—C16124.89 (18)C15—C14—H14B108.7
C17—N1—C16123.95 (18)Si1—C14—H14B108.7
C2—C1—C6115.9 (2)H14A—C14—H14B107.6
C2—C1—Si1122.39 (19)C16—C15—C14112.66 (18)
C6—C1—Si1121.7 (2)C16—C15—H15A109.1
C1—C2—C3121.5 (3)C14—C15—H15A109.1
C1—C2—H2119.3C16—C15—H15B109.1
C3—C2—H2119.3C14—C15—H15B109.1
C4—C3—C2120.8 (3)H15A—C15—H15B107.8
C4—C3—H3119.6N1—C16—C15112.92 (18)
C2—C3—H3119.6N1—C16—H16A109.0
C5—C4—C3119.8 (3)C15—C16—H16A109.0
C5—C4—H4120.1N1—C16—H16B109.0
C3—C4—H4120.1C15—C16—H16B109.0
C4—C5—C6120.1 (3)H16A—C16—H16B107.8
C4—C5—H5120.0O1—C17—N1123.9 (2)
C6—C5—H5120.0O1—C17—C18129.1 (2)
C5—C6—C1122.0 (3)N1—C17—C18106.93 (18)
C5—C6—H6119.0C19—C18—C23121.4 (2)
C1—C6—H6119.0C19—C18—C17131.2 (2)
C12—C7—C8114.6 (3)C23—C18—C17107.33 (19)
C12—C7—Si1121.12 (19)C18—C19—C20117.6 (2)
C8—C7—Si1124.2 (2)C18—C19—H19121.2
C9—C8—C7121.7 (4)C20—C19—H19121.2
C9—C8—H8119.2C21—C20—C19121.1 (3)
C7—C8—H8119.2C21—C20—H20119.5
C10—C9—C8121.0 (3)C19—C20—H20119.5
C10—C9—H9119.5C20—C21—C22121.4 (3)
C8—C9—H9119.5C20—C21—H21119.3
C11—C10—C9118.9 (4)C22—C21—H21119.3
C11—C10—H10116.0C23—C22—C21117.8 (3)
C9—C10—H10125.0C23—C22—H22121.1
C10—C11—C12120.2 (4)C21—C22—H22121.1
C10—C11—H11119.9C22—C23—C18120.7 (2)
C12—C11—H11119.9C22—C23—C24131.1 (2)
C7—C12—C11123.6 (3)C18—C23—C24108.15 (19)
C7—C12—H12118.2O2—C24—N1124.2 (2)
C11—C12—H12118.2O2—C24—C23129.3 (2)
Si1—C13—H13A109.5N1—C24—C23106.49 (19)
Si1—C13—H13B109.5
C13—Si1—C1—C2145.6 (2)Si1—C14—C15—C16172.75 (17)
C7—Si1—C1—C2−95.1 (2)C24—N1—C16—C15−98.5 (3)
C14—Si1—C1—C224.4 (2)C17—N1—C16—C1578.4 (3)
C13—Si1—C1—C6−35.4 (3)C14—C15—C16—N1178.08 (18)
C7—Si1—C1—C683.8 (2)C24—N1—C17—O1179.8 (2)
C14—Si1—C1—C6−156.6 (2)C16—N1—C17—O12.5 (3)
C6—C1—C2—C3−0.6 (4)C24—N1—C17—C18−0.7 (2)
Si1—C1—C2—C3178.4 (2)C16—N1—C17—C18−177.91 (18)
C1—C2—C3—C40.6 (5)O1—C17—C18—C19−1.8 (4)
C2—C3—C4—C5−0.1 (5)N1—C17—C18—C19178.6 (2)
C3—C4—C5—C6−0.4 (5)O1—C17—C18—C23−179.6 (2)
C4—C5—C6—C10.3 (4)N1—C17—C18—C230.9 (2)
C2—C1—C6—C50.2 (4)C23—C18—C19—C20−0.2 (4)
Si1—C1—C6—C5−178.8 (2)C17—C18—C19—C20−177.7 (2)
C13—Si1—C7—C12173.6 (2)C18—C19—C20—C21−0.1 (4)
C14—Si1—C7—C12−65.2 (2)C19—C20—C21—C220.4 (5)
C1—Si1—C7—C1254.1 (2)C20—C21—C22—C23−0.5 (5)
C13—Si1—C7—C8−3.2 (3)C21—C22—C23—C180.3 (4)
C14—Si1—C7—C8118.1 (3)C21—C22—C23—C24178.8 (3)
C1—Si1—C7—C8−122.6 (3)C19—C18—C23—C220.1 (4)
C12—C7—C8—C90.1 (5)C17—C18—C23—C22178.1 (2)
Si1—C7—C8—C9177.1 (3)C19—C18—C23—C24−178.8 (2)
C7—C8—C9—C101.2 (7)C17—C18—C23—C24−0.8 (2)
C8—C9—C10—C11−1.6 (7)C17—N1—C24—O2−179.6 (3)
C9—C10—C11—C120.6 (6)C16—N1—C24—O2−2.4 (4)
C8—C7—C12—C11−1.2 (4)C17—N1—C24—C230.2 (3)
Si1—C7—C12—C11−178.2 (2)C16—N1—C24—C23177.42 (18)
C10—C11—C12—C70.9 (5)C22—C23—C24—O21.4 (5)
C13—Si1—C14—C1552.0 (2)C18—C23—C24—O2−179.9 (3)
C7—Si1—C14—C15−68.50 (19)C22—C23—C24—N1−178.4 (3)
C1—Si1—C14—C15172.63 (15)C18—C23—C24—N10.4 (3)
D—H···AD—HH···AD···AD—H···A
C4—H4···O2i0.932.633.366 (4)137
C14—H14A···O1ii0.972.633.582 (3)169
C19—H19···O2iii0.932.513.310 (3)144
C22—H22···O1iv0.932.323.200 (3)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯O2i0.932.633.366 (4)137
C14—H14A⋯O1ii0.972.633.582 (3)169
C19—H19⋯O2iii0.932.513.310 (3)144
C22—H22⋯O1iv0.932.323.200 (3)157

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  6 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  New software for searching the Cambridge Structural Database and visualizing crystal structures.

Authors:  Ian J Bruno; Jason C Cole; Paul R Edgington; Magnus Kessler; Clare F Macrae; Patrick McCabe; Jonathan Pearson; Robin Taylor
Journal:  Acta Crystallogr B       Date:  2002-05-29

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  2-{[(4-Methoxy-phen-yl)dimethyl-silyl]meth-yl}isoindoline-1,3-dione.

Authors:  Ilia A Guzei; Lara C Spencer; Uzma I Zakai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-24

5.  2-[2-(Trimethyl-silyl)eth-yl]isoindoline-1,3-dione.

Authors:  Ilia A Guzei; Lara C Spencer; Uzma I Zakai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-24

Review 6.  Silicon chemistry as a novel source of chemical diversity in drug design.

Authors:  William Bains; Reinhold Tacke
Journal:  Curr Opin Drug Discov Devel       Date:  2003-07
  6 in total
  2 in total

1.  2-{[(4-Methoxy-phen-yl)dimethyl-silyl]meth-yl}isoindoline-1,3-dione.

Authors:  Ilia A Guzei; Lara C Spencer; Uzma I Zakai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-24

2.  2-[2-(Trimethyl-silyl)eth-yl]isoindoline-1,3-dione.

Authors:  Ilia A Guzei; Lara C Spencer; Uzma I Zakai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-24
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.