Literature DB >> 21580101

(4R)-Ethyl 4-(4-chloro-phen-yl)-2-hydr-oxy-5-oxo-2,3,4,5-tetra-hydro-pyrano[3,2-c]chromene-2-carboxyl-ate.

Yifeng Wang1, Wei Zhang, Xiangsheng Xu, Guangcun Zhang.   

Abstract

The title compound, C(21)H(17)ClO(6), is optically pure and adopts an R configuration. It was obtained by an organocatalytic asymmetric Michael addition of 4-hydroxy-coumarin with (E)-ethyl 4-(4-chloro-phen-yl)-2-oxobut-3-enoate. The structure consists of a tetra-hydro-pyran unit fused to the coumarin ring ring system. The hydroxyl and phenyl groups are on the same side of the tetra-hydro-pyrane ring. The benzene ring is almost perpendicular to the coumarin ring [dihedral angle of 72.89 (3)°]. In the crystal structure, inter-molecular O-H⋯O hydrogen bonds are observed. An intra-molecular O-H⋯O contact also occurs.

Entities:  

Year:  2009        PMID: 21580101      PMCID: PMC2980058          DOI: 10.1107/S1600536809051976

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the use of coumarin derivatives as intermediates in organic and natural product synthesis, see: Fylaktakidou et al., (2004 ▶); Hoult et al., (1996 ▶). For a related structure, see: Zhang et al. (2009 ▶).

Experimental

Crystal data

C21H17ClO6 M = 400.80 Monoclinic, a = 5.4818 (3) Å b = 14.8358 (7) Å c = 11.3403 (6) Å β = 94.6807 (15)° V = 919.20 (8) Å3 Z = 2 Mo Kα radiation μ = 0.25 mm−1 T = 296 K 0.37 × 0.31 × 0.08 mm

Data collection

Rigaku RAXIS-RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.905, T max = 0.981 8978 measured reflections 3606 independent reflections 3027 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.080 S = 1.00 3606 reflections 256 parameters 1 restraint H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.20 e Å−3 Absolute structure: Flack (1983 ▶), 1434 Friedel pairs Flack parameter: 0.07 (6) Data collection: PROCESS-AUTO (Rigaku, 2006 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia,1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809051976/zq2019sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809051976/zq2019Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H17ClO6F(000) = 416
Mr = 400.80Dx = 1.448 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 7553 reflections
a = 5.4818 (3) Åθ = 3.3–27.4°
b = 14.8358 (7) ŵ = 0.25 mm1
c = 11.3403 (6) ÅT = 296 K
β = 94.6807 (15)°Platelet, colorless
V = 919.20 (8) Å30.37 × 0.31 × 0.08 mm
Z = 2
Rigaku RAXIS-RAPID diffractometer3606 independent reflections
Radiation source: rolling anode3027 reflections with I > 2σ(I)
graphiteRint = 0.025
Detector resolution: 10.00 pixels mm-1θmax = 27.4°, θmin = 3.3°
ω scansh = −7→6
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −19→16
Tmin = 0.905, Tmax = 0.981l = −14→14
8978 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.031w = 1/[σ2(Fo2) + (0.0403P)2 + 0.110P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.080(Δ/σ)max < 0.001
S = 1.00Δρmax = 0.16 e Å3
3606 reflectionsΔρmin = −0.20 e Å3
256 parametersExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraintExtinction coefficient: 0.014 (2)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1434 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.07 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C190.7695 (3)0.87640 (13)0.68614 (17)0.0368 (4)
O60.9549 (3)0.87424 (10)0.76723 (12)0.0456 (3)
O50.6200 (3)0.93532 (10)0.67137 (15)0.0542 (4)
C200.9886 (5)0.95257 (18)0.8444 (2)0.0577 (6)
H20A0.85330.95790.89400.069*
H20B0.99651.00720.79780.069*
C211.2228 (5)0.9388 (2)0.9187 (2)0.0677 (7)
H21A1.35640.93800.86900.081*
H21B1.21690.88250.96000.081*
H21C1.24580.98710.97490.081*
Cl10.78443 (13)0.72613 (6)−0.01510 (5)0.0714 (2)
O30.6428 (2)0.72598 (9)0.68482 (11)0.0369 (3)
C90.5060 (3)0.57839 (13)0.71703 (16)0.0345 (4)
O40.6019 (2)0.80479 (9)0.50872 (12)0.0396 (3)
H40.52590.85190.51550.047*
C100.6604 (3)0.63786 (12)0.65397 (16)0.0325 (4)
O20.6645 (3)0.45423 (9)0.60916 (14)0.0467 (4)
O10.9452 (3)0.47428 (10)0.48350 (16)0.0577 (5)
C141.0913 (3)0.72144 (15)0.31531 (17)0.0407 (4)
H141.23570.74200.35520.049*
C130.9207 (3)0.67714 (13)0.37856 (16)0.0334 (4)
C20.8067 (3)0.60639 (12)0.57288 (16)0.0335 (4)
C10.9793 (3)0.66573 (12)0.51166 (16)0.0332 (4)
H11.14060.63700.52220.040*
C80.3482 (4)0.60857 (15)0.79984 (18)0.0429 (5)
H80.34030.66950.81840.051*
C151.0524 (4)0.73588 (16)0.19483 (18)0.0459 (5)
H151.16880.76570.15400.055*
C50.3671 (5)0.42524 (15)0.7439 (2)0.0547 (6)
H50.37210.36440.72480.066*
C110.7569 (3)0.79097 (12)0.60903 (16)0.0320 (4)
C60.2158 (5)0.45589 (17)0.8250 (2)0.0603 (7)
H60.11840.41490.86180.072*
C160.8385 (4)0.70536 (14)0.13638 (18)0.0438 (5)
C170.6664 (4)0.65979 (16)0.19587 (19)0.0476 (5)
H170.52320.63880.15540.057*
C30.8158 (4)0.51022 (13)0.54999 (19)0.0421 (5)
C121.0021 (3)0.75658 (12)0.57806 (17)0.0334 (4)
H12A1.10860.74910.65000.040*
H12B1.07630.80070.52890.040*
C40.5140 (4)0.48726 (14)0.69059 (19)0.0414 (5)
C180.7094 (3)0.64567 (14)0.31706 (18)0.0409 (4)
H180.59440.61460.35730.049*
C70.2036 (4)0.54659 (17)0.8539 (2)0.0544 (6)
H70.09880.56580.90930.065*
U11U22U33U12U13U23
C190.0424 (10)0.0289 (9)0.0403 (10)−0.0053 (9)0.0112 (8)0.0000 (8)
O60.0582 (8)0.0365 (8)0.0417 (8)−0.0048 (7)0.0013 (6)−0.0088 (6)
O50.0549 (9)0.0375 (8)0.0713 (11)0.0070 (7)0.0109 (8)−0.0129 (7)
C200.0693 (14)0.0498 (14)0.0545 (14)−0.0138 (12)0.0078 (11)−0.0206 (11)
C210.0677 (15)0.081 (2)0.0540 (15)−0.0195 (15)0.0045 (12)−0.0199 (14)
Cl10.0961 (5)0.0781 (5)0.0382 (3)0.0081 (4)−0.0048 (3)0.0010 (3)
O30.0452 (7)0.0252 (6)0.0418 (7)−0.0039 (6)0.0128 (5)0.0007 (6)
C90.0382 (9)0.0321 (10)0.0327 (9)−0.0038 (8)0.0006 (7)0.0047 (8)
O40.0399 (7)0.0346 (8)0.0433 (7)0.0059 (6)−0.0023 (6)−0.0007 (6)
C100.0375 (9)0.0238 (8)0.0355 (9)−0.0013 (7)−0.0008 (7)0.0009 (7)
O20.0616 (9)0.0260 (7)0.0541 (9)−0.0058 (6)0.0140 (7)−0.0031 (6)
O10.0745 (11)0.0333 (8)0.0688 (11)0.0064 (8)0.0263 (9)−0.0074 (7)
C140.0350 (9)0.0441 (11)0.0432 (10)−0.0005 (9)0.0046 (8)−0.0034 (10)
C130.0341 (8)0.0285 (9)0.0378 (10)0.0050 (8)0.0046 (7)−0.0021 (8)
C20.0368 (9)0.0256 (8)0.0377 (10)0.0003 (8)0.0015 (8)0.0005 (8)
C10.0315 (8)0.0297 (9)0.0383 (10)0.0030 (8)0.0024 (7)0.0011 (8)
C80.0523 (12)0.0357 (10)0.0410 (11)−0.0040 (9)0.0060 (9)0.0030 (8)
C150.0470 (11)0.0466 (12)0.0450 (11)0.0027 (10)0.0091 (9)0.0025 (10)
C50.0785 (15)0.0323 (11)0.0547 (14)−0.0159 (11)0.0145 (12)0.0029 (10)
C110.0353 (8)0.0246 (9)0.0361 (9)−0.0023 (8)0.0028 (7)0.0018 (7)
C60.0808 (17)0.0471 (14)0.0556 (14)−0.0241 (12)0.0221 (12)0.0057 (11)
C160.0553 (12)0.0407 (12)0.0353 (10)0.0113 (9)0.0035 (9)−0.0019 (8)
C170.0456 (11)0.0477 (13)0.0479 (12)0.0046 (11)−0.0057 (9)−0.0086 (10)
C30.0492 (12)0.0293 (10)0.0481 (12)−0.0005 (9)0.0062 (9)0.0004 (9)
C120.0320 (8)0.0309 (9)0.0374 (10)−0.0034 (7)0.0033 (7)−0.0021 (7)
C40.0518 (11)0.0322 (10)0.0400 (11)−0.0070 (9)0.0027 (9)0.0008 (8)
C180.0377 (10)0.0389 (11)0.0461 (11)−0.0004 (9)0.0043 (8)−0.0044 (9)
C70.0644 (14)0.0506 (13)0.0506 (13)−0.0086 (12)0.0198 (11)0.0060 (10)
C19—O51.201 (3)C14—H140.9300
C19—O61.314 (2)C13—C181.384 (3)
C19—C111.538 (3)C13—C11.527 (3)
O6—C201.457 (3)C2—C31.452 (3)
C20—C211.491 (3)C2—C11.503 (3)
C20—H20A0.9700C1—C121.544 (2)
C20—H20B0.9700C1—H10.9800
C21—H21A0.9600C8—C71.389 (3)
C21—H21B0.9600C8—H80.9300
C21—H21C0.9600C15—C161.376 (3)
Cl1—C161.747 (2)C15—H150.9300
O3—C101.359 (2)C5—C61.366 (4)
O3—C111.466 (2)C5—C41.393 (3)
C9—C41.386 (3)C5—H50.9300
C9—C81.401 (3)C11—C121.506 (2)
C9—C101.451 (3)C6—C71.388 (4)
O4—C111.379 (2)C6—H60.9300
O4—H40.8200C16—C171.381 (3)
C10—C21.352 (3)C17—C181.391 (3)
O2—C41.378 (2)C17—H170.9300
O2—C31.385 (3)C12—H12A0.9700
O1—C31.202 (3)C12—H12B0.9700
C14—C151.382 (3)C18—H180.9300
C14—C131.389 (3)C7—H70.9300
O5—C19—O6126.54 (19)C7—C8—H8120.3
O5—C19—C11121.49 (18)C9—C8—H8120.3
O6—C19—C11111.95 (17)C16—C15—C14118.80 (19)
C19—O6—C20116.98 (18)C16—C15—H15120.6
O6—C20—C21106.9 (2)C14—C15—H15120.6
O6—C20—H20A110.3C6—C5—C4118.5 (2)
C21—C20—H20A110.3C6—C5—H5120.8
O6—C20—H20B110.3C4—C5—H5120.8
C21—C20—H20B110.3O4—C11—O3108.53 (14)
H20A—C20—H20B108.6O4—C11—C12111.09 (15)
C20—C21—H21A109.5O3—C11—C12110.24 (14)
C20—C21—H21B109.5O4—C11—C19110.03 (15)
H21A—C21—H21B109.5O3—C11—C19102.12 (14)
C20—C21—H21C109.5C12—C11—C19114.36 (15)
H21A—C21—H21C109.5C5—C6—C7121.7 (2)
H21B—C21—H21C109.5C5—C6—H6119.2
C10—O3—C11116.05 (14)C7—C6—H6119.2
C4—C9—C8119.26 (17)C15—C16—C17121.02 (19)
C4—C9—C10117.16 (18)C15—C16—Cl1119.04 (17)
C8—C9—C10123.56 (18)C17—C16—Cl1119.94 (16)
C11—O4—H4109.5C16—C17—C18119.28 (18)
C2—C10—O3124.48 (16)C16—C17—H17120.4
C2—C10—C9121.85 (17)C18—C17—H17120.4
O3—C10—C9113.68 (16)O1—C3—O2116.45 (18)
C4—O2—C3121.76 (15)O1—C3—C2125.38 (19)
C15—C14—C13121.85 (17)O2—C3—C2118.17 (17)
C15—C14—H14119.1C11—C12—C1111.80 (14)
C13—C14—H14119.1C11—C12—H12A109.3
C18—C13—C14118.06 (17)C1—C12—H12A109.3
C18—C13—C1124.12 (17)C11—C12—H12B109.3
C14—C13—C1117.82 (15)C1—C12—H12B109.3
C10—C2—C3119.47 (17)H12A—C12—H12B107.9
C10—C2—C1122.87 (17)O2—C4—C9121.55 (17)
C3—C2—C1117.45 (17)O2—C4—C5117.07 (19)
C2—C1—C13115.59 (15)C9—C4—C5121.4 (2)
C2—C1—C12108.35 (15)C13—C18—C17120.96 (19)
C13—C1—C12112.80 (15)C13—C18—H18119.5
C2—C1—H1106.5C17—C18—H18119.5
C13—C1—H1106.5C8—C7—C6119.9 (2)
C12—C1—H1106.5C8—C7—H7120.1
C7—C8—C9119.3 (2)C6—C7—H7120.1
O5—C19—O6—C20−2.5 (3)O6—C19—C11—O379.70 (17)
C11—C19—O6—C20178.81 (17)O5—C19—C11—C12141.84 (19)
C19—O6—C20—C21−173.86 (19)O6—C19—C11—C12−39.4 (2)
C11—O3—C10—C211.5 (3)C4—C5—C6—C70.7 (4)
C11—O3—C10—C9−168.76 (14)C14—C15—C16—C17−1.0 (3)
C4—C9—C10—C2−0.1 (3)C14—C15—C16—Cl1178.24 (17)
C8—C9—C10—C2−178.63 (19)C15—C16—C17—C180.8 (3)
C4—C9—C10—O3−179.89 (16)Cl1—C16—C17—C18−178.46 (16)
C8—C9—C10—O31.6 (3)C4—O2—C3—O1177.8 (2)
C15—C14—C13—C181.2 (3)C4—O2—C3—C2−2.0 (3)
C15—C14—C13—C1−179.16 (19)C10—C2—C3—O1−177.1 (2)
O3—C10—C2—C3178.07 (17)C1—C2—C3—O1−2.2 (3)
C9—C10—C2—C3−1.7 (3)C10—C2—C3—O22.7 (3)
O3—C10—C2—C13.5 (3)C1—C2—C3—O2177.59 (16)
C9—C10—C2—C1−176.26 (16)O4—C11—C12—C1−60.5 (2)
C10—C2—C1—C13−114.25 (19)O3—C11—C12—C159.81 (19)
C3—C2—C1—C1371.1 (2)C19—C11—C12—C1174.18 (15)
C10—C2—C1—C1213.4 (2)C2—C1—C12—C11−44.01 (19)
C3—C2—C1—C12−161.21 (16)C13—C1—C12—C1185.26 (18)
C18—C13—C1—C27.8 (3)C3—O2—C4—C90.2 (3)
C14—C13—C1—C2−171.77 (17)C3—O2—C4—C5179.2 (2)
C18—C13—C1—C12−117.64 (19)C8—C9—C4—O2179.47 (18)
C14—C13—C1—C1262.8 (2)C10—C9—C4—O20.9 (3)
C4—C9—C8—C70.1 (3)C8—C9—C4—C50.5 (3)
C10—C9—C8—C7178.6 (2)C10—C9—C4—C5−178.09 (19)
C13—C14—C15—C160.0 (3)C6—C5—C4—O2−180.0 (2)
C10—O3—C11—O479.38 (18)C6—C5—C4—C9−0.9 (3)
C10—O3—C11—C12−42.5 (2)C14—C13—C18—C17−1.5 (3)
C10—O3—C11—C19−164.42 (14)C1—C13—C18—C17178.97 (18)
O5—C19—C11—O416.0 (2)C16—C17—C18—C130.5 (3)
O6—C19—C11—O4−165.19 (15)C9—C8—C7—C6−0.3 (3)
O5—C19—C11—O3−99.1 (2)C5—C6—C7—C8−0.1 (4)
D—H···AD—HH···AD···AD—H···A
O4—H4···O2i0.822.272.9184 (19)136
O4—H4···O50.822.192.671 (2)118
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4⋯O2i0.822.272.9184 (19)136
O4—H4⋯O50.822.192.671 (2)118

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Natural and synthetic coumarin derivatives with anti-inflammatory/ antioxidant activities.

Authors:  Konstantina C Fylaktakidou; Dimitra J Hadjipavlou-Litina; Konstantinos E Litinas; Demetrios N Nicolaides
Journal:  Curr Pharm Des       Date:  2004       Impact factor: 3.116

3.  Ethyl 2-hydr-oxy-5-oxo-4-phenyl-2,3,4,5-tetra-hydro-pyrano[3,2-c]chromene-2-carboxyl-ate.

Authors:  Wei Zhang; Guangcun Zhang; Bailin Li; Yifeng Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-25

Review 4.  Pharmacological and biochemical actions of simple coumarins: natural products with therapeutic potential.

Authors:  J R Hoult; M Payá
Journal:  Gen Pharmacol       Date:  1996-06
  4 in total
  1 in total

1.  Erratum: (4R)-Ethyl 4-(4-chloro-phen-yl)-2-hydr-oxy-5-oxo-2,3,4,5-tetra-hydro-pyrano[3,2-c]chromene-2-carboxyl-ate. Corrigendum.

Authors:  Yifeng Wang; Wei Zhang; Xiangsheng Xu; Guangcun Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-30
  1 in total

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