| Literature DB >> 21580081 |
Abstract
The cation of the title compound, C(14)H(14)N(3) (+)·I(-), is non-planar, the dihedral angle between the benzimidazole and the 1-methyl-pyridinium planes being 37.4 (2)°. The crystal structure is stabilized by weak π-π stacking inter-actions, the centroid-centroid distances between 1-methyl-imidazole and benzimidazole planes being 3.678 (4) Å.Entities:
Year: 2009 PMID: 21580081 PMCID: PMC2980206 DOI: 10.1107/S1600536809053938
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H14N3+·I− | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1236 reflections | |
| θ = 3.1–22.1° | |
| µ = 2.38 mm−1 | |
| α = 64.888 (3)° | |
| β = 72.933 (3)° | Piece, colorless |
| γ = 76.394 (4)° | 0.35 × 0.25 × 0.05 mm |
| Bruker SMART CCD area-detector diffractometer | 2307 independent reflections |
| Radiation source: sealed tube | 1840 reflections with |
| graphite | |
| phi and ω scans | θmax = 25.0°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 3353 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2307 reflections | (Δ/σ)max < 0.001 |
| 163 parameters | Δρmax = 0.94 e Å−3 |
| 0 restraints | Δρmin = −0.48 e Å−3 |
| Geometry. Least-squares planes ( |
| Refinement. Refinement of |
| C1 | 0.7976 (9) | 0.1720 (7) | 0.3724 (7) | 0.0574 (18) | |
| H1A | 0.7850 | 0.1418 | 0.4774 | 0.086* | |
| H1B | 0.9149 | 0.1293 | 0.3311 | 0.086* | |
| H1C | 0.7027 | 0.1374 | 0.3557 | 0.086* | |
| C2 | 0.7960 (8) | 0.4044 (7) | 0.1519 (7) | 0.0443 (15) | |
| H2A | 0.8121 | 0.3452 | 0.0977 | 0.053* | |
| C3 | 0.7870 (8) | 0.5551 (6) | 0.0807 (7) | 0.0422 (15) | |
| H3A | 0.7948 | 0.5992 | −0.0214 | 0.051* | |
| C4 | 0.7660 (8) | 0.6442 (6) | 0.1610 (6) | 0.0387 (14) | |
| C5 | 0.7505 (8) | 0.5736 (6) | 0.3135 (6) | 0.0422 (15) | |
| H5A | 0.7337 | 0.6297 | 0.3707 | 0.051* | |
| C6 | 0.7598 (8) | 0.4226 (7) | 0.3784 (7) | 0.0445 (15) | |
| H6A | 0.7506 | 0.3759 | 0.4806 | 0.053* | |
| C7 | 0.7700 (8) | 0.8070 (6) | 0.0779 (6) | 0.0339 (13) | |
| C8 | 0.8426 (8) | 1.0150 (6) | −0.0938 (6) | 0.0395 (14) | |
| C9 | 0.9152 (8) | 1.1306 (7) | −0.2232 (7) | 0.0443 (15) | |
| H9A | 1.0063 | 1.1104 | −0.2983 | 0.053* | |
| C10 | 0.8473 (9) | 1.2748 (7) | −0.2354 (7) | 0.0498 (17) | |
| H10A | 0.8941 | 1.3536 | −0.3202 | 0.060* | |
| C11 | 0.7082 (9) | 1.3076 (7) | −0.1230 (7) | 0.0482 (16) | |
| H11A | 0.6644 | 1.4071 | −0.1361 | 0.058* | |
| C12 | 0.6369 (8) | 1.1955 (6) | 0.0047 (7) | 0.0423 (15) | |
| H12A | 0.5454 | 1.2161 | 0.0793 | 0.051* | |
| C13 | 0.7076 (7) | 1.0494 (6) | 0.0175 (6) | 0.0344 (13) | |
| C14 | 0.5260 (8) | 0.8957 (7) | 0.2645 (7) | 0.0478 (16) | |
| H14A | 0.5225 | 0.7909 | 0.3245 | 0.072* | |
| H14B | 0.4090 | 0.9405 | 0.2400 | 0.072* | |
| H14C | 0.5541 | 0.9438 | 0.3187 | 0.072* | |
| I1 | 0.26309 (6) | 0.26836 (5) | 0.37099 (4) | 0.05037 (19) | |
| N1 | 0.7821 (6) | 0.3387 (5) | 0.2996 (6) | 0.0432 (12) | |
| N2 | 0.8779 (7) | 0.8606 (5) | −0.0548 (5) | 0.0426 (12) | |
| N3 | 0.6668 (6) | 0.9141 (5) | 0.1277 (5) | 0.0367 (11) |
| C1 | 0.062 (5) | 0.042 (4) | 0.064 (5) | −0.010 (3) | −0.008 (4) | −0.019 (3) |
| C2 | 0.047 (4) | 0.049 (4) | 0.045 (4) | −0.011 (3) | −0.011 (3) | −0.023 (3) |
| C3 | 0.043 (4) | 0.046 (4) | 0.042 (4) | 0.001 (3) | −0.011 (3) | −0.022 (3) |
| C4 | 0.030 (3) | 0.047 (4) | 0.042 (4) | −0.001 (3) | −0.008 (3) | −0.021 (3) |
| C5 | 0.046 (4) | 0.045 (4) | 0.042 (4) | −0.010 (3) | −0.007 (3) | −0.022 (3) |
| C6 | 0.053 (4) | 0.044 (4) | 0.037 (3) | −0.004 (3) | −0.008 (3) | −0.018 (3) |
| C7 | 0.032 (3) | 0.039 (3) | 0.033 (3) | −0.005 (3) | −0.008 (3) | −0.016 (3) |
| C8 | 0.043 (4) | 0.042 (4) | 0.039 (3) | −0.006 (3) | −0.016 (3) | −0.016 (3) |
| C9 | 0.045 (4) | 0.046 (4) | 0.043 (4) | −0.011 (3) | −0.010 (3) | −0.016 (3) |
| C10 | 0.052 (4) | 0.051 (4) | 0.046 (4) | −0.020 (3) | −0.021 (3) | −0.005 (3) |
| C11 | 0.048 (4) | 0.038 (4) | 0.065 (5) | −0.001 (3) | −0.024 (4) | −0.021 (3) |
| C12 | 0.041 (4) | 0.044 (4) | 0.048 (4) | 0.001 (3) | −0.013 (3) | −0.024 (3) |
| C13 | 0.032 (3) | 0.041 (4) | 0.036 (3) | −0.003 (3) | −0.014 (3) | −0.017 (3) |
| C14 | 0.042 (4) | 0.047 (4) | 0.053 (4) | −0.004 (3) | −0.008 (3) | −0.021 (3) |
| I1 | 0.0493 (3) | 0.0535 (3) | 0.0478 (3) | −0.0021 (2) | −0.0128 (2) | −0.0197 (2) |
| N1 | 0.034 (3) | 0.039 (3) | 0.057 (3) | −0.003 (2) | −0.013 (3) | −0.017 (3) |
| N2 | 0.045 (3) | 0.046 (3) | 0.044 (3) | −0.006 (2) | −0.014 (3) | −0.021 (2) |
| N3 | 0.031 (3) | 0.045 (3) | 0.038 (3) | −0.004 (2) | −0.009 (2) | −0.020 (3) |
| C1—N1 | 1.490 (8) | C8—N2 | 1.389 (7) |
| C1—H1A | 0.9600 | C8—C13 | 1.397 (8) |
| C1—H1B | 0.9600 | C8—C9 | 1.397 (8) |
| C1—H1C | 0.9600 | C9—C10 | 1.368 (8) |
| C2—N1 | 1.343 (7) | C9—H9A | 0.9300 |
| C2—C3 | 1.353 (8) | C10—C11 | 1.412 (9) |
| C2—H2A | 0.9300 | C10—H10A | 0.9300 |
| C3—C4 | 1.395 (7) | C11—C12 | 1.368 (8) |
| C3—H3A | 0.9300 | C11—H11A | 0.9300 |
| C4—C5 | 1.386 (7) | C12—C13 | 1.388 (7) |
| C4—C7 | 1.475 (8) | C12—H12A | 0.9300 |
| C5—C6 | 1.350 (7) | C13—N3 | 1.369 (7) |
| C5—H5A | 0.9300 | C14—N3 | 1.462 (7) |
| C6—N1 | 1.336 (7) | C14—H14A | 0.9600 |
| C6—H6A | 0.9300 | C14—H14B | 0.9600 |
| C7—N2 | 1.318 (7) | C14—H14C | 0.9600 |
| C7—N3 | 1.357 (7) | ||
| N1—C1—H1A | 109.5 | C10—C9—H9A | 121.3 |
| N1—C1—H1B | 109.5 | C8—C9—H9A | 121.3 |
| H1A—C1—H1B | 109.5 | C9—C10—C11 | 122.1 (6) |
| N1—C1—H1C | 109.5 | C9—C10—H10A | 119.0 |
| H1A—C1—H1C | 109.5 | C11—C10—H10A | 119.0 |
| H1B—C1—H1C | 109.5 | C12—C11—C10 | 121.1 (6) |
| N1—C2—C3 | 121.1 (5) | C12—C11—H11A | 119.5 |
| N1—C2—H2A | 119.5 | C10—C11—H11A | 119.5 |
| C3—C2—H2A | 119.5 | C11—C12—C13 | 116.7 (6) |
| C2—C3—C4 | 119.7 (6) | C11—C12—H12A | 121.6 |
| C2—C3—H3A | 120.1 | C13—C12—H12A | 121.6 |
| C4—C3—H3A | 120.1 | N3—C13—C12 | 131.6 (5) |
| C5—C4—C3 | 118.0 (5) | N3—C13—C8 | 105.5 (5) |
| C5—C4—C7 | 123.9 (5) | C12—C13—C8 | 122.9 (6) |
| C3—C4—C7 | 118.1 (5) | N3—C14—H14A | 109.5 |
| C6—C5—C4 | 119.6 (5) | N3—C14—H14B | 109.5 |
| C6—C5—H5A | 120.2 | H14A—C14—H14B | 109.5 |
| C4—C5—H5A | 120.2 | N3—C14—H14C | 109.5 |
| N1—C6—C5 | 121.8 (6) | H14A—C14—H14C | 109.5 |
| N1—C6—H6A | 119.1 | H14B—C14—H14C | 109.5 |
| C5—C6—H6A | 119.1 | C6—N1—C2 | 119.9 (5) |
| N2—C7—N3 | 114.0 (5) | C6—N1—C1 | 121.0 (5) |
| N2—C7—C4 | 121.4 (5) | C2—N1—C1 | 119.1 (5) |
| N3—C7—C4 | 124.6 (5) | C7—N2—C8 | 103.7 (5) |
| N2—C8—C13 | 110.2 (5) | C7—N3—C13 | 106.5 (5) |
| N2—C8—C9 | 130.0 (6) | C7—N3—C14 | 128.7 (5) |
| C13—C8—C9 | 119.8 (5) | C13—N3—C14 | 124.6 (5) |
| C10—C9—C8 | 117.4 (6) | ||
| N1—C2—C3—C4 | 1.1 (9) | N2—C8—C13—C12 | −176.0 (5) |
| C2—C3—C4—C5 | −1.6 (9) | C9—C8—C13—C12 | 1.7 (8) |
| C2—C3—C4—C7 | 175.7 (5) | C5—C6—N1—C2 | 0.1 (9) |
| C3—C4—C5—C6 | 1.3 (9) | C5—C6—N1—C1 | 178.2 (6) |
| C7—C4—C5—C6 | −175.7 (5) | C3—C2—N1—C6 | −0.3 (9) |
| C4—C5—C6—N1 | −0.6 (9) | C3—C2—N1—C1 | −178.5 (6) |
| C5—C4—C7—N2 | 141.4 (6) | N3—C7—N2—C8 | 0.4 (6) |
| C3—C4—C7—N2 | −35.7 (8) | C4—C7—N2—C8 | −179.7 (5) |
| C5—C4—C7—N3 | −38.7 (8) | C13—C8—N2—C7 | −1.9 (6) |
| C3—C4—C7—N3 | 144.2 (5) | C9—C8—N2—C7 | −179.3 (6) |
| N2—C8—C9—C10 | 176.4 (5) | N2—C7—N3—C13 | 1.2 (6) |
| C13—C8—C9—C10 | −0.8 (8) | C4—C7—N3—C13 | −178.7 (5) |
| C8—C9—C10—C11 | −0.4 (8) | N2—C7—N3—C14 | 176.0 (5) |
| C9—C10—C11—C12 | 0.9 (9) | C4—C7—N3—C14 | −3.8 (8) |
| C10—C11—C12—C13 | −0.1 (8) | C12—C13—N3—C7 | 176.2 (5) |
| C11—C12—C13—N3 | −179.4 (5) | C8—C13—N3—C7 | −2.2 (5) |
| C11—C12—C13—C8 | −1.2 (8) | C12—C13—N3—C14 | 1.1 (9) |
| N2—C8—C13—N3 | 2.6 (6) | C8—C13—N3—C14 | −177.3 (5) |
| C9—C8—C13—N3 | −179.7 (5) |