| Literature DB >> 21580080 |
Abstract
In the title compound, C(17)H(15)N(3)O(4), the atoms of the spiro pyran ring are nearly planar with a maximum deviation of 0.0188 (14) Å. The benzene and pyrrole rings make a dihedral angle of 5.71 (6)°. The indole system and the pyran ring are oriented at a dihedral angle of 82.94 (3)°. The crystal structure is stabilized by inter-molecular classical and non-classical N-H⋯O, N-H⋯N and C-H⋯O hydrogen bonds.Entities:
Year: 2009 PMID: 21580080 PMCID: PMC2979997 DOI: 10.1107/S1600536809054075
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C17H15N3O4 | |
| Monoclinic, | Melting point = 511–512 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 5549 reflections | |
| θ = 3.1–25.3° | |
| µ = 0.10 mm−1 | |
| β = 103.435 (4)° | |
| Prism, colorless | |
| 0.60 × 0.30 × 0.24 mm |
| Rigaku Mercury diffractometer | 2779 independent reflections |
| Radiation source: fine-focus sealed tube | 2550 reflections with |
| graphite | |
| Detector resolution: 7.31 pixels mm-1 | θmax = 25.3°, θmin = 3.2° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 14692 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2779 reflections | (Δ/σ)max < 0.001 |
| 228 parameters | Δρmax = 0.23 e Å−3 |
| 0 restraints | Δρmin = −0.31 e Å−3 |
| Experimental. Spectroscopic analysis: IR (KBr, n, cm-1): 3480, 3372, 3287, 2191, 1721, 1620, 1474, 1381, 1288, 1211, 1072, 756, 679, 625. 1H NMR (400 MHz, DMSO-d6): 10.39 (s, 1H, NH), 7.13-7.18 (m, 3H, NH2 + ArH), 7.03 (d, J = 10.0 Hz, 1H, ArH), 6.90 (t, J = 10.0 Hz, 1H, ArH), 6.77 (d, J = 10.4 Hz, 1H, ArH), 3.71-3.76 (m, 2H, CH2), 0.75 (t, J = 9.6 Hz, 3H, CH3). |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | −0.02630 (14) | 0.40611 (6) | 0.47320 (10) | 0.0250 (3) | |
| O2 | −0.29838 (16) | 0.31533 (6) | 0.74767 (13) | 0.0361 (3) | |
| O3 | −0.15237 (13) | 0.38754 (5) | 0.90531 (10) | 0.0210 (3) | |
| O4 | 0.02295 (14) | 0.52209 (5) | 0.82365 (11) | 0.0220 (3) | |
| N1 | 0.21452 (16) | 0.45913 (6) | 0.98355 (12) | 0.0198 (3) | |
| H1 | 0.2470 | 0.4898 | 1.0472 | 0.024* | |
| N2 | 0.52683 (18) | 0.47764 (7) | 0.73427 (15) | 0.0310 (3) | |
| N3 | 0.2201 (2) | 0.44309 (8) | 0.42427 (14) | 0.0266 (3) | |
| H3A | 0.322 (3) | 0.4642 (10) | 0.446 (2) | 0.039 (6)* | |
| H3B | 0.144 (3) | 0.4529 (10) | 0.343 (2) | 0.039 (5)* | |
| C1 | −0.1291 (2) | 0.38438 (8) | 0.56013 (15) | 0.0213 (3) | |
| C2 | −0.07153 (19) | 0.38461 (7) | 0.69607 (15) | 0.0186 (3) | |
| C3 | 0.11176 (19) | 0.40821 (7) | 0.76868 (15) | 0.0172 (3) | |
| C4 | 0.21368 (19) | 0.42787 (7) | 0.66251 (15) | 0.0178 (3) | |
| C5 | 0.1420 (2) | 0.42671 (7) | 0.52598 (15) | 0.0198 (3) | |
| C6 | −0.3046 (2) | 0.36409 (10) | 0.47479 (18) | 0.0324 (4) | |
| H6A | −0.2958 | 0.3193 | 0.4374 | 0.049* | |
| H6B | −0.3417 | 0.3960 | 0.3995 | 0.049* | |
| H6C | −0.3916 | 0.3637 | 0.5313 | 0.049* | |
| C7 | −0.18809 (19) | 0.35822 (8) | 0.78223 (16) | 0.0212 (3) | |
| C8 | −0.2410 (2) | 0.35970 (8) | 1.00633 (16) | 0.0252 (4) | |
| H8A | −0.3478 | 0.3347 | 0.9593 | 0.030* | |
| H8B | −0.2782 | 0.3963 | 1.0598 | 0.030* | |
| C9 | −0.1167 (3) | 0.31383 (10) | 1.1002 (2) | 0.0395 (5) | |
| H9A | −0.0801 | 0.2778 | 1.0467 | 0.059* | |
| H9B | −0.1762 | 0.2947 | 1.1673 | 0.059* | |
| H9C | −0.0125 | 0.3390 | 1.1479 | 0.059* | |
| C10 | 0.10541 (19) | 0.47069 (7) | 0.86000 (15) | 0.0167 (3) | |
| C11 | 0.26981 (19) | 0.39209 (8) | 0.99810 (15) | 0.0200 (3) | |
| C12 | 0.3617 (2) | 0.35940 (9) | 1.11389 (17) | 0.0267 (4) | |
| H12 | 0.4029 | 0.3825 | 1.1979 | 0.032* | |
| C13 | 0.3917 (2) | 0.29121 (9) | 1.10268 (18) | 0.0312 (4) | |
| H13 | 0.4564 | 0.2675 | 1.1802 | 0.037* | |
| C14 | 0.3292 (2) | 0.25720 (9) | 0.98083 (19) | 0.0311 (4) | |
| H14 | 0.3489 | 0.2105 | 0.9765 | 0.037* | |
| C15 | 0.2374 (2) | 0.29119 (8) | 0.86432 (17) | 0.0249 (4) | |
| H15 | 0.1948 | 0.2681 | 0.7805 | 0.030* | |
| C16 | 0.21024 (19) | 0.35887 (7) | 0.87391 (15) | 0.0185 (3) | |
| C17 | 0.3870 (2) | 0.45422 (8) | 0.70497 (15) | 0.0203 (3) |
| O1 | 0.0210 (6) | 0.0353 (6) | 0.0174 (5) | −0.0048 (5) | 0.0020 (4) | 0.0002 (5) |
| O2 | 0.0352 (7) | 0.0357 (7) | 0.0425 (7) | −0.0195 (6) | 0.0193 (6) | −0.0165 (6) |
| O3 | 0.0192 (6) | 0.0251 (6) | 0.0203 (5) | −0.0058 (4) | 0.0075 (4) | −0.0010 (4) |
| O4 | 0.0238 (6) | 0.0198 (6) | 0.0225 (6) | 0.0026 (4) | 0.0055 (5) | 0.0002 (4) |
| N1 | 0.0194 (7) | 0.0230 (7) | 0.0161 (6) | −0.0020 (5) | 0.0021 (5) | −0.0028 (5) |
| N2 | 0.0216 (8) | 0.0377 (8) | 0.0339 (8) | −0.0051 (6) | 0.0069 (6) | 0.0020 (6) |
| N3 | 0.0248 (8) | 0.0378 (8) | 0.0178 (7) | −0.0024 (7) | 0.0058 (6) | 0.0023 (6) |
| C1 | 0.0175 (8) | 0.0226 (8) | 0.0238 (8) | −0.0010 (6) | 0.0049 (6) | −0.0013 (6) |
| C2 | 0.0166 (7) | 0.0177 (7) | 0.0214 (8) | 0.0002 (6) | 0.0041 (6) | −0.0027 (6) |
| C3 | 0.0150 (7) | 0.0187 (7) | 0.0183 (7) | −0.0005 (6) | 0.0050 (6) | 0.0001 (6) |
| C4 | 0.0163 (7) | 0.0191 (7) | 0.0185 (7) | 0.0008 (6) | 0.0050 (6) | −0.0002 (6) |
| C5 | 0.0185 (8) | 0.0207 (8) | 0.0202 (8) | 0.0017 (6) | 0.0043 (6) | −0.0003 (6) |
| C6 | 0.0252 (9) | 0.0403 (10) | 0.0281 (9) | −0.0073 (8) | −0.0010 (7) | −0.0021 (8) |
| C7 | 0.0167 (7) | 0.0200 (8) | 0.0277 (8) | −0.0009 (6) | 0.0069 (6) | −0.0032 (6) |
| C8 | 0.0247 (8) | 0.0288 (9) | 0.0264 (8) | −0.0073 (7) | 0.0144 (7) | −0.0009 (7) |
| C9 | 0.0426 (11) | 0.0362 (10) | 0.0437 (11) | −0.0027 (8) | 0.0185 (9) | 0.0142 (8) |
| C10 | 0.0147 (7) | 0.0199 (8) | 0.0166 (7) | −0.0027 (6) | 0.0061 (6) | 0.0003 (6) |
| C11 | 0.0143 (7) | 0.0267 (8) | 0.0203 (8) | 0.0002 (6) | 0.0070 (6) | 0.0033 (6) |
| C12 | 0.0173 (8) | 0.0415 (10) | 0.0215 (8) | 0.0019 (7) | 0.0052 (6) | 0.0086 (7) |
| C13 | 0.0195 (8) | 0.0427 (10) | 0.0339 (10) | 0.0086 (7) | 0.0111 (7) | 0.0188 (8) |
| C14 | 0.0245 (9) | 0.0264 (9) | 0.0465 (11) | 0.0098 (7) | 0.0163 (8) | 0.0131 (8) |
| C15 | 0.0212 (8) | 0.0245 (8) | 0.0319 (9) | 0.0021 (6) | 0.0121 (7) | 0.0011 (7) |
| C16 | 0.0138 (7) | 0.0227 (8) | 0.0204 (8) | −0.0002 (6) | 0.0072 (6) | 0.0024 (6) |
| C17 | 0.0209 (8) | 0.0242 (8) | 0.0167 (7) | 0.0022 (6) | 0.0059 (6) | 0.0024 (6) |
| O1—C5 | 1.3577 (19) | C4—C17 | 1.418 (2) |
| O1—C1 | 1.3840 (19) | C6—H6A | 0.9800 |
| O2—C7 | 1.2058 (19) | C6—H6B | 0.9800 |
| O3—C7 | 1.3378 (19) | C6—H6C | 0.9800 |
| O3—C8 | 1.4631 (18) | C8—C9 | 1.497 (3) |
| O4—C10 | 1.2218 (18) | C8—H8A | 0.9900 |
| N1—C10 | 1.3508 (19) | C8—H8B | 0.9900 |
| N1—C11 | 1.405 (2) | C9—H9A | 0.9800 |
| N1—H1 | 0.8800 | C9—H9B | 0.9800 |
| N2—C17 | 1.158 (2) | C9—H9C | 0.9800 |
| N3—C5 | 1.345 (2) | C11—C12 | 1.380 (2) |
| N3—H3A | 0.88 (2) | C11—C16 | 1.394 (2) |
| N3—H3B | 0.91 (2) | C12—C13 | 1.392 (3) |
| C1—C2 | 1.334 (2) | C12—H12 | 0.9500 |
| C1—C6 | 1.490 (2) | C13—C14 | 1.386 (3) |
| C2—C7 | 1.488 (2) | C13—H13 | 0.9500 |
| C2—C3 | 1.518 (2) | C14—C15 | 1.397 (2) |
| C3—C16 | 1.517 (2) | C14—H14 | 0.9500 |
| C3—C4 | 1.521 (2) | C15—C16 | 1.377 (2) |
| C3—C10 | 1.558 (2) | C15—H15 | 0.9500 |
| C4—C5 | 1.355 (2) | ||
| C5—O1—C1 | 119.69 (11) | O3—C8—C9 | 109.26 (13) |
| C7—O3—C8 | 116.35 (12) | O3—C8—H8A | 109.8 |
| C10—N1—C11 | 111.76 (12) | C9—C8—H8A | 109.8 |
| C10—N1—H1 | 124.1 | O3—C8—H8B | 109.8 |
| C11—N1—H1 | 124.1 | C9—C8—H8B | 109.8 |
| C5—N3—H3A | 118.2 (13) | H8A—C8—H8B | 108.3 |
| C5—N3—H3B | 114.7 (13) | C8—C9—H9A | 109.5 |
| H3A—N3—H3B | 118.5 (19) | C8—C9—H9B | 109.5 |
| C2—C1—O1 | 122.60 (13) | H9A—C9—H9B | 109.5 |
| C2—C1—C6 | 129.37 (14) | C8—C9—H9C | 109.5 |
| O1—C1—C6 | 108.01 (13) | H9A—C9—H9C | 109.5 |
| C1—C2—C7 | 119.26 (14) | H9B—C9—H9C | 109.5 |
| C1—C2—C3 | 123.16 (13) | O4—C10—N1 | 126.37 (14) |
| C7—C2—C3 | 117.53 (13) | O4—C10—C3 | 125.82 (13) |
| C16—C3—C2 | 113.49 (12) | N1—C10—C3 | 107.73 (12) |
| C16—C3—C4 | 113.29 (12) | C12—C11—C16 | 121.85 (15) |
| C2—C3—C4 | 109.16 (12) | C12—C11—N1 | 128.74 (15) |
| C16—C3—C10 | 101.03 (12) | C16—C11—N1 | 109.36 (13) |
| C2—C3—C10 | 112.18 (12) | C11—C12—C13 | 117.36 (16) |
| C4—C3—C10 | 107.37 (11) | C11—C12—H12 | 121.3 |
| C5—C4—C17 | 116.72 (13) | C13—C12—H12 | 121.3 |
| C5—C4—C3 | 123.09 (13) | C14—C13—C12 | 121.40 (15) |
| C17—C4—C3 | 119.97 (13) | C14—C13—H13 | 119.3 |
| N3—C5—C4 | 127.76 (14) | C12—C13—H13 | 119.3 |
| N3—C5—O1 | 110.01 (13) | C13—C14—C15 | 120.47 (16) |
| C4—C5—O1 | 122.21 (13) | C13—C14—H14 | 119.8 |
| C1—C6—H6A | 109.5 | C15—C14—H14 | 119.8 |
| C1—C6—H6B | 109.5 | C16—C15—C14 | 118.46 (16) |
| H6A—C6—H6B | 109.5 | C16—C15—H15 | 120.8 |
| C1—C6—H6C | 109.5 | C14—C15—H15 | 120.8 |
| H6A—C6—H6C | 109.5 | C15—C16—C11 | 120.43 (14) |
| H6B—C6—H6C | 109.5 | C15—C16—C3 | 130.66 (14) |
| O2—C7—O3 | 123.98 (14) | C11—C16—C3 | 108.82 (13) |
| O2—C7—C2 | 125.02 (14) | N2—C17—C4 | 176.79 (16) |
| O3—C7—C2 | 110.98 (12) | ||
| C5—O1—C1—C2 | 2.1 (2) | C3—C2—C7—O3 | 30.15 (18) |
| C5—O1—C1—C6 | −179.13 (13) | C7—O3—C8—C9 | 98.97 (16) |
| O1—C1—C2—C7 | −177.92 (13) | C11—N1—C10—O4 | 172.10 (14) |
| C6—C1—C2—C7 | 3.6 (3) | C11—N1—C10—C3 | −11.17 (16) |
| O1—C1—C2—C3 | −0.4 (2) | C16—C3—C10—O4 | −172.22 (14) |
| C6—C1—C2—C3 | −178.80 (15) | C2—C3—C10—O4 | −51.02 (19) |
| C1—C2—C3—C16 | −129.44 (15) | C4—C3—C10—O4 | 68.90 (18) |
| C7—C2—C3—C16 | 48.16 (17) | C16—C3—C10—N1 | 11.03 (14) |
| C1—C2—C3—C4 | −2.1 (2) | C2—C3—C10—N1 | 132.23 (13) |
| C7—C2—C3—C4 | 175.55 (12) | C4—C3—C10—N1 | −107.85 (13) |
| C1—C2—C3—C10 | 116.82 (16) | C10—N1—C11—C12 | −170.85 (15) |
| C7—C2—C3—C10 | −65.58 (16) | C10—N1—C11—C16 | 6.45 (17) |
| C16—C3—C4—C5 | 130.57 (15) | C16—C11—C12—C13 | −0.6 (2) |
| C2—C3—C4—C5 | 3.1 (2) | N1—C11—C12—C13 | 176.36 (14) |
| C10—C3—C4—C5 | −118.77 (15) | C11—C12—C13—C14 | −1.1 (2) |
| C16—C3—C4—C17 | −54.99 (18) | C12—C13—C14—C15 | 1.6 (2) |
| C2—C3—C4—C17 | 177.50 (13) | C13—C14—C15—C16 | −0.3 (2) |
| C10—C3—C4—C17 | 55.67 (17) | C14—C15—C16—C11 | −1.4 (2) |
| C17—C4—C5—N3 | 5.3 (2) | C14—C15—C16—C3 | −177.64 (14) |
| C3—C4—C5—N3 | 179.89 (15) | C12—C11—C16—C15 | 1.9 (2) |
| C17—C4—C5—O1 | −176.31 (13) | N1—C11—C16—C15 | −175.60 (13) |
| C3—C4—C5—O1 | −1.7 (2) | C12—C11—C16—C3 | 178.90 (13) |
| C1—O1—C5—N3 | 177.58 (13) | N1—C11—C16—C3 | 1.38 (16) |
| C1—O1—C5—C4 | −1.1 (2) | C2—C3—C16—C15 | 49.0 (2) |
| C8—O3—C7—O2 | 6.8 (2) | C4—C3—C16—C15 | −76.2 (2) |
| C8—O3—C7—C2 | −172.00 (12) | C10—C3—C16—C15 | 169.28 (15) |
| C1—C2—C7—O2 | 29.0 (2) | C2—C3—C16—C11 | −127.57 (13) |
| C3—C2—C7—O2 | −148.67 (16) | C4—C3—C16—C11 | 107.22 (14) |
| C1—C2—C7—O3 | −152.16 (14) | C10—C3—C16—C11 | −7.30 (15) |
| H··· | ||||
| N1—H1···N2i | 0.88 | 2.56 | 3.321 (2) | 146 |
| N1—H1···O3ii | 0.88 | 2.64 | 3.337 (2) | 137 |
| N3—H3A···N2iii | 0.88 (2) | 2.64 (2) | 3.223 (2) | 124 (2) |
| N3—H3B···O4iv | 0.91 (2) | 1.93 (2) | 2.841 (2) | 177 (2) |
| C13—H13···O2v | 0.95 | 2.50 | 3.293 (2) | 141 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯N2i | 0.88 | 2.56 | 3.321 (2) | 146 |
| N1—H1⋯O3ii | 0.88 | 2.64 | 3.337 (2) | 137 |
| N3—H3 | 0.88 (2) | 2.64 (2) | 3.223 (2) | 124 (2) |
| N3—H3 | 0.91 (2) | 1.93 (2) | 2.841 (2) | 177 (2) |
| C13—H13⋯O2v | 0.95 | 2.50 | 3.293 (2) | 141 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .