Literature DB >> 21580080

Ethyl 6'-amino-5'-cyano-2'-methyl-2-oxospiro-[indoline-3,4'-pyran]-3'-carboxyl-ate.

Jing Wang1, Song-Lei Zhu.   

Abstract

In the title compound, C(17)H(15)N(3)O(4), the atoms of the spiro pyran ring are nearly planar with a maximum deviation of 0.0188 (14) Å. The benzene and pyrrole rings make a dihedral angle of 5.71 (6)°. The indole system and the pyran ring are oriented at a dihedral angle of 82.94 (3)°. The crystal structure is stabilized by inter-molecular classical and non-classical N-H⋯O, N-H⋯N and C-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21580080      PMCID: PMC2979997          DOI: 10.1107/S1600536809054075

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the indole nucleus, see: da Silva et al. (2001 ▶). For the anti­bacterial and fungicidal activities of indoles, see: Joshi & Chand (1982 ▶). Spiro­oxindole ring systems are found in a number of alkaloids, e.g. horsifiline, spiro­tryprostatin and elacomine, see: Abdel-Rahman et al. (2004 ▶). For our work on the preparation of heterocyclic compounds involving indole derivatives, see: Zhu et al. (2007 ▶).

Experimental

Crystal data

C17H15N3O4 M = 325.32 Monoclinic, a = 7.7812 (16) Å b = 19.998 (4) Å c = 10.044 (2) Å β = 103.435 (4)° V = 1520.2 (6) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 153 K 0.60 × 0.30 × 0.24 mm

Data collection

Rigaku Mercury diffractometer Absorption correction: multi-scan (ABSCOR; Jacobson, 1998 ▶) T min = 0.764, T max = 0.975 14692 measured reflections 2779 independent reflections 2550 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.096 S = 1.14 2779 reflections 228 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.31 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2001 ▶); cell refinement: CrystalClear; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97 and PLATOn class="Chemical">N. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809054075/pv2248sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809054075/pv2248Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H15N3O4F(000) = 680
Mr = 325.32Dx = 1.421 Mg m3
Monoclinic, P21/cMelting point = 511–512 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71070 Å
a = 7.7812 (16) ÅCell parameters from 5549 reflections
b = 19.998 (4) Åθ = 3.1–25.3°
c = 10.044 (2) ŵ = 0.10 mm1
β = 103.435 (4)°T = 153 K
V = 1520.2 (6) Å3Prism, colorless
Z = 40.60 × 0.30 × 0.24 mm
Rigaku Mercury diffractometer2779 independent reflections
Radiation source: fine-focus sealed tube2550 reflections with I > 2σ(I)
graphiteRint = 0.026
Detector resolution: 7.31 pixels mm-1θmax = 25.3°, θmin = 3.2°
ω scansh = −8→9
Absorption correction: multi-scan (ABSCOR; Jacobson, 1998)k = −24→24
Tmin = 0.764, Tmax = 0.975l = −12→11
14692 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H atoms treated by a mixture of independent and constrained refinement
S = 1.14w = 1/[σ2(Fo2) + (0.0403P)2 + 0.642P] where P = (Fo2 + 2Fc2)/3
2779 reflections(Δ/σ)max < 0.001
228 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.31 e Å3
Experimental. Spectroscopic analysis: IR (KBr, n, cm-1): 3480, 3372, 3287, 2191, 1721, 1620, 1474, 1381, 1288, 1211, 1072, 756, 679, 625. 1H NMR (400 MHz, DMSO-d6): 10.39 (s, 1H, NH), 7.13-7.18 (m, 3H, NH2 + ArH), 7.03 (d, J = 10.0 Hz, 1H, ArH), 6.90 (t, J = 10.0 Hz, 1H, ArH), 6.77 (d, J = 10.4 Hz, 1H, ArH), 3.71-3.76 (m, 2H, CH2), 0.75 (t, J = 9.6 Hz, 3H, CH3).
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.02630 (14)0.40611 (6)0.47320 (10)0.0250 (3)
O2−0.29838 (16)0.31533 (6)0.74767 (13)0.0361 (3)
O3−0.15237 (13)0.38754 (5)0.90531 (10)0.0210 (3)
O40.02295 (14)0.52209 (5)0.82365 (11)0.0220 (3)
N10.21452 (16)0.45913 (6)0.98355 (12)0.0198 (3)
H10.24700.48981.04720.024*
N20.52683 (18)0.47764 (7)0.73427 (15)0.0310 (3)
N30.2201 (2)0.44309 (8)0.42427 (14)0.0266 (3)
H3A0.322 (3)0.4642 (10)0.446 (2)0.039 (6)*
H3B0.144 (3)0.4529 (10)0.343 (2)0.039 (5)*
C1−0.1291 (2)0.38438 (8)0.56013 (15)0.0213 (3)
C2−0.07153 (19)0.38461 (7)0.69607 (15)0.0186 (3)
C30.11176 (19)0.40821 (7)0.76868 (15)0.0172 (3)
C40.21368 (19)0.42787 (7)0.66251 (15)0.0178 (3)
C50.1420 (2)0.42671 (7)0.52598 (15)0.0198 (3)
C6−0.3046 (2)0.36409 (10)0.47479 (18)0.0324 (4)
H6A−0.29580.31930.43740.049*
H6B−0.34170.39600.39950.049*
H6C−0.39160.36370.53130.049*
C7−0.18809 (19)0.35822 (8)0.78223 (16)0.0212 (3)
C8−0.2410 (2)0.35970 (8)1.00633 (16)0.0252 (4)
H8A−0.34780.33470.95930.030*
H8B−0.27820.39631.05980.030*
C9−0.1167 (3)0.31383 (10)1.1002 (2)0.0395 (5)
H9A−0.08010.27781.04670.059*
H9B−0.17620.29471.16730.059*
H9C−0.01250.33901.14790.059*
C100.10541 (19)0.47069 (7)0.86000 (15)0.0167 (3)
C110.26981 (19)0.39209 (8)0.99810 (15)0.0200 (3)
C120.3617 (2)0.35940 (9)1.11389 (17)0.0267 (4)
H120.40290.38251.19790.032*
C130.3917 (2)0.29121 (9)1.10268 (18)0.0312 (4)
H130.45640.26751.18020.037*
C140.3292 (2)0.25720 (9)0.98083 (19)0.0311 (4)
H140.34890.21050.97650.037*
C150.2374 (2)0.29119 (8)0.86432 (17)0.0249 (4)
H150.19480.26810.78050.030*
C160.21024 (19)0.35887 (7)0.87391 (15)0.0185 (3)
C170.3870 (2)0.45422 (8)0.70497 (15)0.0203 (3)
U11U22U33U12U13U23
O10.0210 (6)0.0353 (6)0.0174 (5)−0.0048 (5)0.0020 (4)0.0002 (5)
O20.0352 (7)0.0357 (7)0.0425 (7)−0.0195 (6)0.0193 (6)−0.0165 (6)
O30.0192 (6)0.0251 (6)0.0203 (5)−0.0058 (4)0.0075 (4)−0.0010 (4)
O40.0238 (6)0.0198 (6)0.0225 (6)0.0026 (4)0.0055 (5)0.0002 (4)
N10.0194 (7)0.0230 (7)0.0161 (6)−0.0020 (5)0.0021 (5)−0.0028 (5)
N20.0216 (8)0.0377 (8)0.0339 (8)−0.0051 (6)0.0069 (6)0.0020 (6)
N30.0248 (8)0.0378 (8)0.0178 (7)−0.0024 (7)0.0058 (6)0.0023 (6)
C10.0175 (8)0.0226 (8)0.0238 (8)−0.0010 (6)0.0049 (6)−0.0013 (6)
C20.0166 (7)0.0177 (7)0.0214 (8)0.0002 (6)0.0041 (6)−0.0027 (6)
C30.0150 (7)0.0187 (7)0.0183 (7)−0.0005 (6)0.0050 (6)0.0001 (6)
C40.0163 (7)0.0191 (7)0.0185 (7)0.0008 (6)0.0050 (6)−0.0002 (6)
C50.0185 (8)0.0207 (8)0.0202 (8)0.0017 (6)0.0043 (6)−0.0003 (6)
C60.0252 (9)0.0403 (10)0.0281 (9)−0.0073 (8)−0.0010 (7)−0.0021 (8)
C70.0167 (7)0.0200 (8)0.0277 (8)−0.0009 (6)0.0069 (6)−0.0032 (6)
C80.0247 (8)0.0288 (9)0.0264 (8)−0.0073 (7)0.0144 (7)−0.0009 (7)
C90.0426 (11)0.0362 (10)0.0437 (11)−0.0027 (8)0.0185 (9)0.0142 (8)
C100.0147 (7)0.0199 (8)0.0166 (7)−0.0027 (6)0.0061 (6)0.0003 (6)
C110.0143 (7)0.0267 (8)0.0203 (8)0.0002 (6)0.0070 (6)0.0033 (6)
C120.0173 (8)0.0415 (10)0.0215 (8)0.0019 (7)0.0052 (6)0.0086 (7)
C130.0195 (8)0.0427 (10)0.0339 (10)0.0086 (7)0.0111 (7)0.0188 (8)
C140.0245 (9)0.0264 (9)0.0465 (11)0.0098 (7)0.0163 (8)0.0131 (8)
C150.0212 (8)0.0245 (8)0.0319 (9)0.0021 (6)0.0121 (7)0.0011 (7)
C160.0138 (7)0.0227 (8)0.0204 (8)−0.0002 (6)0.0072 (6)0.0024 (6)
C170.0209 (8)0.0242 (8)0.0167 (7)0.0022 (6)0.0059 (6)0.0024 (6)
O1—C51.3577 (19)C4—C171.418 (2)
O1—C11.3840 (19)C6—H6A0.9800
O2—C71.2058 (19)C6—H6B0.9800
O3—C71.3378 (19)C6—H6C0.9800
O3—C81.4631 (18)C8—C91.497 (3)
O4—C101.2218 (18)C8—H8A0.9900
N1—C101.3508 (19)C8—H8B0.9900
N1—C111.405 (2)C9—H9A0.9800
N1—H10.8800C9—H9B0.9800
N2—C171.158 (2)C9—H9C0.9800
N3—C51.345 (2)C11—C121.380 (2)
N3—H3A0.88 (2)C11—C161.394 (2)
N3—H3B0.91 (2)C12—C131.392 (3)
C1—C21.334 (2)C12—H120.9500
C1—C61.490 (2)C13—C141.386 (3)
C2—C71.488 (2)C13—H130.9500
C2—C31.518 (2)C14—C151.397 (2)
C3—C161.517 (2)C14—H140.9500
C3—C41.521 (2)C15—C161.377 (2)
C3—C101.558 (2)C15—H150.9500
C4—C51.355 (2)
C5—O1—C1119.69 (11)O3—C8—C9109.26 (13)
C7—O3—C8116.35 (12)O3—C8—H8A109.8
C10—N1—C11111.76 (12)C9—C8—H8A109.8
C10—N1—H1124.1O3—C8—H8B109.8
C11—N1—H1124.1C9—C8—H8B109.8
C5—N3—H3A118.2 (13)H8A—C8—H8B108.3
C5—N3—H3B114.7 (13)C8—C9—H9A109.5
H3A—N3—H3B118.5 (19)C8—C9—H9B109.5
C2—C1—O1122.60 (13)H9A—C9—H9B109.5
C2—C1—C6129.37 (14)C8—C9—H9C109.5
O1—C1—C6108.01 (13)H9A—C9—H9C109.5
C1—C2—C7119.26 (14)H9B—C9—H9C109.5
C1—C2—C3123.16 (13)O4—C10—N1126.37 (14)
C7—C2—C3117.53 (13)O4—C10—C3125.82 (13)
C16—C3—C2113.49 (12)N1—C10—C3107.73 (12)
C16—C3—C4113.29 (12)C12—C11—C16121.85 (15)
C2—C3—C4109.16 (12)C12—C11—N1128.74 (15)
C16—C3—C10101.03 (12)C16—C11—N1109.36 (13)
C2—C3—C10112.18 (12)C11—C12—C13117.36 (16)
C4—C3—C10107.37 (11)C11—C12—H12121.3
C5—C4—C17116.72 (13)C13—C12—H12121.3
C5—C4—C3123.09 (13)C14—C13—C12121.40 (15)
C17—C4—C3119.97 (13)C14—C13—H13119.3
N3—C5—C4127.76 (14)C12—C13—H13119.3
N3—C5—O1110.01 (13)C13—C14—C15120.47 (16)
C4—C5—O1122.21 (13)C13—C14—H14119.8
C1—C6—H6A109.5C15—C14—H14119.8
C1—C6—H6B109.5C16—C15—C14118.46 (16)
H6A—C6—H6B109.5C16—C15—H15120.8
C1—C6—H6C109.5C14—C15—H15120.8
H6A—C6—H6C109.5C15—C16—C11120.43 (14)
H6B—C6—H6C109.5C15—C16—C3130.66 (14)
O2—C7—O3123.98 (14)C11—C16—C3108.82 (13)
O2—C7—C2125.02 (14)N2—C17—C4176.79 (16)
O3—C7—C2110.98 (12)
C5—O1—C1—C22.1 (2)C3—C2—C7—O330.15 (18)
C5—O1—C1—C6−179.13 (13)C7—O3—C8—C998.97 (16)
O1—C1—C2—C7−177.92 (13)C11—N1—C10—O4172.10 (14)
C6—C1—C2—C73.6 (3)C11—N1—C10—C3−11.17 (16)
O1—C1—C2—C3−0.4 (2)C16—C3—C10—O4−172.22 (14)
C6—C1—C2—C3−178.80 (15)C2—C3—C10—O4−51.02 (19)
C1—C2—C3—C16−129.44 (15)C4—C3—C10—O468.90 (18)
C7—C2—C3—C1648.16 (17)C16—C3—C10—N111.03 (14)
C1—C2—C3—C4−2.1 (2)C2—C3—C10—N1132.23 (13)
C7—C2—C3—C4175.55 (12)C4—C3—C10—N1−107.85 (13)
C1—C2—C3—C10116.82 (16)C10—N1—C11—C12−170.85 (15)
C7—C2—C3—C10−65.58 (16)C10—N1—C11—C166.45 (17)
C16—C3—C4—C5130.57 (15)C16—C11—C12—C13−0.6 (2)
C2—C3—C4—C53.1 (2)N1—C11—C12—C13176.36 (14)
C10—C3—C4—C5−118.77 (15)C11—C12—C13—C14−1.1 (2)
C16—C3—C4—C17−54.99 (18)C12—C13—C14—C151.6 (2)
C2—C3—C4—C17177.50 (13)C13—C14—C15—C16−0.3 (2)
C10—C3—C4—C1755.67 (17)C14—C15—C16—C11−1.4 (2)
C17—C4—C5—N35.3 (2)C14—C15—C16—C3−177.64 (14)
C3—C4—C5—N3179.89 (15)C12—C11—C16—C151.9 (2)
C17—C4—C5—O1−176.31 (13)N1—C11—C16—C15−175.60 (13)
C3—C4—C5—O1−1.7 (2)C12—C11—C16—C3178.90 (13)
C1—O1—C5—N3177.58 (13)N1—C11—C16—C31.38 (16)
C1—O1—C5—C4−1.1 (2)C2—C3—C16—C1549.0 (2)
C8—O3—C7—O26.8 (2)C4—C3—C16—C15−76.2 (2)
C8—O3—C7—C2−172.00 (12)C10—C3—C16—C15169.28 (15)
C1—C2—C7—O229.0 (2)C2—C3—C16—C11−127.57 (13)
C3—C2—C7—O2−148.67 (16)C4—C3—C16—C11107.22 (14)
C1—C2—C7—O3−152.16 (14)C10—C3—C16—C11−7.30 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1···N2i0.882.563.321 (2)146
N1—H1···O3ii0.882.643.337 (2)137
N3—H3A···N2iii0.88 (2)2.64 (2)3.223 (2)124 (2)
N3—H3B···O4iv0.91 (2)1.93 (2)2.841 (2)177 (2)
C13—H13···O2v0.952.503.293 (2)141
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯N2i0.882.563.321 (2)146
N1—H1⋯O3ii0.882.643.337 (2)137
N3—H3A⋯N2iii0.88 (2)2.64 (2)3.223 (2)124 (2)
N3—H3B⋯O4iv0.91 (2)1.93 (2)2.841 (2)177 (2)
C13—H13⋯O2v0.952.503.293 (2)141

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Biologically active indole derivatives.

Authors:  K C Joshi; P Chand
Journal:  Pharmazie       Date:  1982-01       Impact factor: 1.267

3.  Synthesis and evaluation of some new spiro indoline-based heterocycles as potentially active antimicrobial agents.

Authors:  A H Abdel-Rahman; E M Keshk; M A Hanna; Sh M el-Bady
Journal:  Bioorg Med Chem       Date:  2004-05-01       Impact factor: 3.641

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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