Literature DB >> 21580076

(E)-1-(4-Nitro-phen-yl)-2-(4-{[(E)-2-(4-nitro-phen-yl)hydrazinyl-idene]meth-yl}benzyl-idene)hydrazine dihydrate.

Edward R T Tiekink, James L Wardell, Solange M S V Wardell.   

Abstract

The 30 non-H atoms in title dihydrazine compound, C(20)H(16)N(6)O(4)·2H(2)O, are close to coplanar, the r.m.s. deviation for these atoms being 0.096 Å. The conformation about each of the C=N bonds is E, and the mol-ecule has non-crystallographic 2/m symmetry. The presence of O-H⋯O and N-H⋯O hydrogen bonding leads to a three-dimensional network in the crystal structure. A highly disordered solvent mol-ecule is present within a mol-ecular cavity defined by the organic and water mol-ecules. Its contribution to the electron density was removed from the observed data in the final cycles of refinement and the formula, molecular weight and density are given without taking into account the contribution of the solvent molecule.

Entities:  

Year:  2009        PMID: 21580076      PMCID: PMC2980149          DOI: 10.1107/S1600536809053963

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the structural chemistry of hydrazones, see: Baddeley et al. (2009 ▶); Ferguson et al. (2005 ▶); Glidewell et al. (2006 ▶); Low et al. (2006 ▶); Wardell et al. (2005 ▶, 2006 ▶). For the synthesis, see: Bengelsdorf (1958 ▶).

Experimental

Crystal data

C20H16N6O4·2H2O M = 440.42 Triclinic, a = 7.7549 (4) Å b = 9.3245 (7) Å c = 15.3374 (11) Å α = 100.749 (3)° β = 90.533 (4)° γ = 103.131 (5)° V = 1059.56 (12) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 120 K 0.38 × 0.22 × 0.07 mm

Data collection

Nonius KappaCCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.770, T max = 1.000 16566 measured reflections 3688 independent reflections 2638 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.177 S = 1.09 3688 reflections 301 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.45 e Å−3 Δρmin = −0.30 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809053963/hg2618sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809053963/hg2618Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H16N6O4·2H2OZ = 2
Mr = 440.42F(000) = 460
Triclinic, P1Dx = 1.380 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.7549 (4) ÅCell parameters from 4364 reflections
b = 9.3245 (7) Åθ = 2.9–27.5°
c = 15.3374 (11) ŵ = 0.11 mm1
α = 100.749 (3)°T = 120 K
β = 90.533 (4)°Block, dark-red
γ = 103.131 (5)°0.38 × 0.22 × 0.07 mm
V = 1059.56 (12) Å3
Nonius KappaCCD area-detector diffractometer3688 independent reflections
Radiation source: Enraf–Nonius FR591 rotating anode2638 reflections with I > 2σ(I)
10 cm confocal mirrorsRint = 0.039
Detector resolution: 9.091 pixels mm-1θmax = 25.0°, θmin = 3.0°
φ and ω scansh = −9→8
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −11→11
Tmin = 0.770, Tmax = 1.000l = −18→18
16566 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.177H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0852P)2 + 0.5693P] where P = (Fo2 + 2Fc2)/3
3688 reflections(Δ/σ)max < 0.001
301 parametersΔρmax = 0.45 e Å3
6 restraintsΔρmin = −0.30 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.2175 (2)−0.6067 (2)1.41897 (13)0.0387 (5)
O2−0.3174 (3)−0.6708 (2)1.28198 (14)0.0421 (5)
O31.1204 (2)0.9370 (2)0.69699 (13)0.0388 (5)
O40.9881 (2)0.8999 (2)0.56744 (12)0.0340 (5)
N1−0.2205 (3)−0.5823 (2)1.34244 (16)0.0314 (5)
N20.2344 (3)−0.0749 (2)1.26201 (14)0.0285 (5)
H2N0.3112−0.01491.30300.034*
N30.2300 (3)−0.0459 (2)1.17772 (14)0.0279 (5)
N40.5188 (3)0.3449 (2)0.80714 (13)0.0268 (5)
N50.5234 (3)0.3707 (2)0.72248 (13)0.0272 (5)
H5N0.45080.30890.68030.033*
N61.0012 (3)0.8658 (2)0.64104 (14)0.0281 (5)
C1−0.1068 (3)−0.4476 (3)1.32299 (17)0.0264 (6)
C20.0140 (3)−0.3527 (3)1.38838 (18)0.0298 (6)
H20.0190−0.37401.44640.036*
C30.1262 (3)−0.2277 (3)1.36776 (17)0.0275 (6)
H30.2084−0.16181.41190.033*
C40.1193 (3)−0.1974 (3)1.28162 (16)0.0250 (6)
C5−0.0061 (3)−0.2935 (3)1.21764 (18)0.0312 (6)
H5−0.0141−0.27211.15970.037*
C6−0.1168 (4)−0.4174 (3)1.23830 (19)0.0330 (6)
H6−0.2005−0.48291.19460.040*
C70.3492 (3)0.0666 (3)1.16298 (17)0.0285 (6)
H70.43290.12301.20940.034*
C80.3571 (3)0.1086 (3)1.07560 (17)0.0270 (6)
C90.4848 (4)0.2336 (3)1.06298 (18)0.0371 (7)
H90.56280.29131.11140.044*
C100.4993 (4)0.2748 (3)0.98095 (18)0.0365 (7)
H100.58570.36170.97400.044*
C110.3902 (3)0.1917 (3)0.90894 (17)0.0267 (6)
C120.2590 (4)0.0692 (3)0.92239 (19)0.0399 (7)
H120.17920.01290.87430.048*
C130.2436 (4)0.0288 (3)1.00415 (19)0.0400 (7)
H130.1535−0.05541.01170.048*
C140.4076 (3)0.2275 (3)0.82018 (17)0.0274 (6)
H140.33560.16280.77160.033*
C150.6399 (3)0.4935 (3)0.70347 (16)0.0246 (6)
C160.7616 (3)0.5904 (3)0.76914 (16)0.0259 (6)
H160.76250.57210.82800.031*
C170.8788 (3)0.7112 (3)0.74798 (17)0.0267 (6)
H170.96260.77570.79200.032*
C180.8752 (3)0.7394 (3)0.66236 (17)0.0251 (6)
C190.7543 (3)0.6461 (3)0.59689 (17)0.0275 (6)
H190.75150.66700.53870.033*
C200.6385 (3)0.5231 (3)0.61741 (17)0.0274 (6)
H200.55690.45770.57270.033*
O1W0.3412 (2)0.1327 (2)0.56735 (12)0.0346 (5)
H1W0.2326 (16)0.095 (3)0.565 (2)0.052*
H2W0.386 (4)0.141 (4)0.5191 (12)0.052*
O2W0.4975 (2)0.9015 (2)0.59601 (13)0.0349 (5)
H3W0.434 (3)0.961 (3)0.590 (2)0.052*
H4W0.429 (3)0.826 (2)0.609 (2)0.052*
U11U22U33U12U13U23
O10.0431 (11)0.0390 (12)0.0363 (12)0.0049 (9)0.0133 (9)0.0185 (9)
O20.0404 (11)0.0315 (11)0.0495 (13)−0.0048 (9)−0.0040 (10)0.0116 (10)
O30.0373 (11)0.0373 (11)0.0372 (12)−0.0057 (9)−0.0012 (9)0.0132 (9)
O40.0418 (11)0.0321 (11)0.0311 (11)0.0050 (8)0.0072 (8)0.0175 (8)
N10.0298 (12)0.0267 (12)0.0424 (15)0.0093 (10)0.0104 (10)0.0146 (11)
N20.0320 (12)0.0277 (12)0.0272 (12)0.0028 (9)0.0048 (9)0.0136 (9)
N30.0344 (12)0.0279 (12)0.0247 (12)0.0085 (10)0.0076 (9)0.0115 (9)
N40.0301 (12)0.0279 (12)0.0259 (12)0.0073 (9)0.0064 (9)0.0129 (9)
N50.0301 (12)0.0277 (12)0.0227 (12)0.0000 (9)0.0038 (9)0.0106 (9)
N60.0319 (12)0.0258 (12)0.0296 (13)0.0075 (10)0.0078 (10)0.0115 (10)
C10.0244 (13)0.0230 (13)0.0345 (15)0.0062 (11)0.0077 (11)0.0110 (11)
C20.0325 (14)0.0327 (15)0.0309 (15)0.0132 (12)0.0116 (11)0.0155 (12)
C30.0282 (14)0.0284 (14)0.0279 (14)0.0059 (11)0.0065 (11)0.0108 (11)
C40.0262 (13)0.0246 (13)0.0278 (14)0.0089 (10)0.0078 (10)0.0095 (11)
C50.0352 (15)0.0308 (15)0.0302 (15)0.0045 (12)0.0016 (12)0.0161 (12)
C60.0336 (15)0.0291 (15)0.0368 (16)0.0054 (12)−0.0007 (12)0.0102 (12)
C70.0289 (14)0.0270 (14)0.0300 (15)0.0029 (11)0.0040 (11)0.0111 (11)
C80.0278 (14)0.0264 (14)0.0296 (14)0.0070 (11)0.0068 (11)0.0115 (11)
C90.0369 (15)0.0376 (16)0.0303 (16)−0.0083 (12)−0.0002 (12)0.0116 (12)
C100.0377 (16)0.0336 (15)0.0336 (16)−0.0077 (12)0.0036 (12)0.0146 (13)
C110.0275 (13)0.0264 (14)0.0299 (15)0.0074 (11)0.0068 (11)0.0132 (11)
C120.0414 (16)0.0389 (17)0.0334 (16)−0.0101 (13)−0.0032 (12)0.0157 (13)
C130.0405 (16)0.0368 (16)0.0383 (17)−0.0111 (13)0.0025 (13)0.0206 (13)
C140.0300 (14)0.0240 (14)0.0284 (14)0.0030 (11)0.0031 (11)0.0095 (11)
C150.0257 (13)0.0219 (13)0.0287 (14)0.0074 (10)0.0074 (10)0.0088 (11)
C160.0298 (14)0.0286 (14)0.0220 (13)0.0084 (11)0.0061 (10)0.0097 (11)
C170.0283 (14)0.0256 (14)0.0264 (14)0.0049 (11)0.0033 (10)0.0073 (11)
C180.0248 (13)0.0227 (13)0.0312 (15)0.0066 (10)0.0080 (11)0.0121 (11)
C190.0327 (14)0.0280 (14)0.0259 (14)0.0085 (11)0.0073 (11)0.0131 (11)
C200.0295 (14)0.0263 (14)0.0264 (14)0.0035 (11)0.0028 (11)0.0090 (11)
O1W0.0327 (11)0.0375 (11)0.0319 (11)0.0007 (9)0.0043 (8)0.0118 (9)
O2W0.0358 (11)0.0304 (11)0.0409 (12)0.0022 (8)0.0049 (9)0.0192 (9)
O1—N11.238 (3)C8—C131.382 (4)
O2—N11.235 (3)C8—C91.393 (4)
O3—N61.235 (3)C9—C101.381 (4)
O4—N61.237 (3)C9—H90.9500
N1—C11.444 (3)C10—C111.379 (4)
N2—C41.364 (3)C10—H100.9500
N2—N31.371 (3)C11—C121.395 (4)
N2—H2N0.8796C11—C141.461 (3)
N3—C71.288 (3)C12—C131.374 (4)
N4—C141.280 (3)C12—H120.9500
N4—N51.364 (3)C13—H130.9500
N5—C151.368 (3)C14—H140.9500
N5—H5N0.8799C15—C201.398 (3)
N6—C181.442 (3)C15—C161.406 (4)
C1—C61.384 (4)C16—C171.370 (3)
C1—C21.393 (4)C16—H160.9500
C2—C31.377 (3)C17—C181.388 (3)
C2—H20.9500C17—H170.9500
C3—C41.405 (3)C18—C191.389 (4)
C3—H30.9500C19—C201.376 (3)
C4—C51.404 (4)C19—H190.9500
C5—C61.365 (4)C20—H200.9500
C5—H50.9500O1W—H1W0.833 (10)
C6—H60.9500O1W—H2W0.831 (10)
C7—C81.463 (3)O2W—H3W0.839 (10)
C7—H70.9500O2W—H4W0.836 (10)
O2—N1—O1121.7 (2)C10—C9—C8120.9 (3)
O2—N1—C1119.1 (2)C10—C9—H9119.6
O1—N1—C1119.3 (2)C8—C9—H9119.6
C4—N2—N3119.5 (2)C9—C10—C11120.9 (2)
C4—N2—H2N120.4C9—C10—H10119.5
N3—N2—H2N120.1C11—C10—H10119.5
C7—N3—N2115.9 (2)C10—C11—C12118.1 (2)
C14—N4—N5116.7 (2)C10—C11—C14122.4 (2)
N4—N5—C15119.9 (2)C12—C11—C14119.5 (2)
N4—N5—H5N119.9C13—C12—C11121.0 (3)
C15—N5—H5N120.2C13—C12—H12119.5
O3—N6—O4121.8 (2)C11—C12—H12119.5
O3—N6—C18118.8 (2)C12—C13—C8121.0 (2)
O4—N6—C18119.5 (2)C12—C13—H13119.5
C6—C1—C2121.1 (2)C8—C13—H13119.5
C6—C1—N1119.0 (2)N4—C14—C11120.8 (2)
C2—C1—N1119.9 (2)N4—C14—H14119.6
C3—C2—C1119.2 (2)C11—C14—H14119.6
C3—C2—H2120.4N5—C15—C20119.6 (2)
C1—C2—H2120.4N5—C15—C16121.0 (2)
C2—C3—C4120.2 (2)C20—C15—C16119.4 (2)
C2—C3—H3119.9C17—C16—C15119.8 (2)
C4—C3—H3119.9C17—C16—H16120.1
N2—C4—C3119.3 (2)C15—C16—H16120.1
N2—C4—C5121.4 (2)C16—C17—C18120.1 (2)
C3—C4—C5119.3 (2)C16—C17—H17120.0
C6—C5—C4120.3 (2)C18—C17—H17120.0
C6—C5—H5119.9C17—C18—C19120.9 (2)
C4—C5—H5119.9C17—C18—N6119.3 (2)
C5—C6—C1119.9 (3)C19—C18—N6119.8 (2)
C5—C6—H6120.0C20—C19—C18119.2 (2)
C1—C6—H6120.0C20—C19—H19120.4
N3—C7—C8120.8 (2)C18—C19—H19120.4
N3—C7—H7119.6C19—C20—C15120.6 (2)
C8—C7—H7119.6C19—C20—H20119.7
C13—C8—C9118.1 (2)C15—C20—H20119.7
C13—C8—C7122.8 (2)H1W—O1W—H2W117 (3)
C9—C8—C7119.1 (2)H3W—O2W—H4W106 (3)
C4—N2—N3—C7−176.2 (2)C9—C10—C11—C14−176.8 (2)
C14—N4—N5—C15−179.5 (2)C10—C11—C12—C13−2.6 (4)
O2—N1—C1—C63.6 (3)C14—C11—C12—C13177.3 (3)
O1—N1—C1—C6−177.0 (2)C11—C12—C13—C80.3 (5)
O2—N1—C1—C2−174.6 (2)C9—C8—C13—C121.6 (4)
O1—N1—C1—C24.8 (3)C7—C8—C13—C12−177.9 (3)
C6—C1—C2—C3−0.6 (4)N5—N4—C14—C11−178.8 (2)
N1—C1—C2—C3177.6 (2)C10—C11—C14—N4−4.7 (4)
C1—C2—C3—C4−0.5 (4)C12—C11—C14—N4175.3 (2)
N3—N2—C4—C3179.1 (2)N4—N5—C15—C20−177.1 (2)
N3—N2—C4—C5−1.1 (3)N4—N5—C15—C163.0 (3)
C2—C3—C4—N2−178.5 (2)N5—C15—C16—C17178.9 (2)
C2—C3—C4—C51.7 (4)C20—C15—C16—C17−0.9 (4)
N2—C4—C5—C6178.3 (2)C15—C16—C17—C181.2 (4)
C3—C4—C5—C6−1.9 (4)C16—C17—C18—C19−0.3 (4)
C4—C5—C6—C10.8 (4)C16—C17—C18—N6−179.1 (2)
C2—C1—C6—C50.5 (4)O3—N6—C18—C177.1 (3)
N1—C1—C6—C5−177.7 (2)O4—N6—C18—C17−173.2 (2)
N2—N3—C7—C8−179.8 (2)O3—N6—C18—C19−171.7 (2)
N3—C7—C8—C13−2.3 (4)O4—N6—C18—C197.9 (3)
N3—C7—C8—C9178.2 (2)C17—C18—C19—C20−0.9 (4)
C13—C8—C9—C10−1.1 (4)N6—C18—C19—C20177.9 (2)
C7—C8—C9—C10178.4 (2)C18—C19—C20—C151.2 (4)
C8—C9—C10—C11−1.3 (4)N5—C15—C20—C19179.9 (2)
C9—C10—C11—C123.1 (4)C16—C15—C20—C19−0.3 (4)
D—H···AD—HH···AD···AD—H···A
O1W—H1w···O4i0.833 (17)2.32 (2)3.084 (2)153 (2)
O1W—H2w···O2wii0.83 (2)2.01 (2)2.808 (3)163 (3)
N5—H5n···O1w0.882.173.021 (3)163
O2W—H3w···O1wiii0.84 (3)1.98 (3)2.800 (3)165 (3)
O2W—H4w···O1iv0.84 (2)2.28 (2)3.061 (3)156 (3)
O2W—H4w···O2iv0.84 (2)2.45 (2)3.204 (3)150 (3)
N2—H2n···O2wv0.882.092.959 (3)172
C7—H7···O2vi0.952.483.374 (3)157
C14—H14···O3i0.952.453.338 (3)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1w⋯O4i0.83 (2)2.32 (2)3.084 (2)153 (2)
O1W—H2w⋯O2wii0.83 (2)2.01 (2)2.808 (3)163 (3)
N5—H5n⋯O1w0.882.173.021 (3)163
O2W—H3w⋯O1wiii0.84 (3)1.98 (3)2.800 (3)165 (3)
O2W—H4w⋯O1iv0.84 (2)2.28 (2)3.061 (3)156 (3)
O2W—H4w⋯O2iv0.84 (2)2.45 (2)3.204 (3)150 (3)
N2—H2n⋯O2wv0.882.092.959 (3)172
C7—H7⋯O2vi0.952.483.374 (3)157
C14—H14⋯O3i0.952.453.338 (3)156

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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Authors:  Christopher Glidewell; John N Low; Janet M S Skakle; James L Wardell
Journal:  Acta Crystallogr B       Date:  2006-07-12

4.  Hydrogen-bonded sheets in (E)-2-nitrobenzaldehyde 4-nitrophenylhydrazone and a hydrogen-bonded framework structure in (E)-4-nitrobenzaldehyde 4-nitrophenylhydrazone.

Authors:  James L Wardell; Janet M S Skakle; John N Low; Christopher Glidewell
Journal:  Acta Crystallogr C       Date:  2004-12-11       Impact factor: 1.172

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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