Literature DB >> 21580067

N-(2,4,5-Trichloro-phen-yl)maleamic acid.

B Thimme Gowda, Miroslav Tokarčík, Jozef Kožíšek, K Shakuntala, Hartmut Fuess.   

Abstract

The title compound, C(10)H(6)Cl(3)NO(3), crystallizes with two independent mol-ecules in the asymmetric unit. The mol-ecular structure is stabilized by a short intra-molecular O-H⋯O hydrogen bond within the maleamic unit. In the crystal, each mol-ecule self-associates via N-H⋯O hydrogen bonds into chains, each running along the b axis. Two short inter-molecular Cl⋯O contacts [3.1267 (15) and 3.0523 (12) Å] and C-H⋯O inter-actions inter-connect these chains into a three-dimensional network.

Entities:  

Year:  2009        PMID: 21580067      PMCID: PMC2980077          DOI: 10.1107/S1600536809052520

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For studies on the effect of ring- and side-chain substitutions on the crystal structures of amides, see: Gowda et al. (2009 ▶, 2010 ▶); Lo & Ng (2009 ▶); Prasad et al. (2002 ▶); Shakuntala et al. (2009 ▶). For the concept of orthogonality of halogen and hydrogen bonds, see: Voth et al. (2009 ▶). For a review on short halogenoxygen contacts, see: Fourmigué (2009 ▶); Kubicki (2004 ▶).

Experimental

Crystal data

C10H6Cl3NO3 M = 294.51 Monoclinic, a = 10.8979 (2) Å b = 11.0225 (2) Å c = 19.4739 (3) Å β = 95.4761 (9)° V = 2328.57 (7) Å3 Z = 8 Mo Kα radiation μ = 0.78 mm−1 T = 295 K 0.34 × 0.25 × 0.22 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with a Ruby Gemini detector Absorption correction: analytical (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.794, T max = 0.852 49446 measured reflections 4424 independent reflections 3825 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.079 S = 1.06 4424 reflections 315 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.32 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2002 ▶); software used to prepare material for publication: SHELXL97, PLATON (Spek, 2009 ▶) and WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809052520/tk2591sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809052520/tk2591Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H6Cl3NO3F(000) = 1184
Mr = 294.51Dx = 1.68 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 30027 reflections
a = 10.8979 (2) Åθ = 1.8–29.5°
b = 11.0225 (2) ŵ = 0.78 mm1
c = 19.4739 (3) ÅT = 295 K
β = 95.4761 (9)°Block, colourless
V = 2328.57 (7) Å30.34 × 0.25 × 0.22 mm
Z = 8
Oxford Diffraction Xcalibur diffractometer with a Ruby Gemini detector4424 independent reflections
graphite3825 reflections with I > 2σ(I)
Detector resolution: 10.434 pixels mm-1Rint = 0.022
ω scansθmax = 25.7°, θmin = 1.9°
Absorption correction: analytical (CrysAlis PRO; Oxford Diffraction, 2009)h = −13→13
Tmin = 0.794, Tmax = 0.852k = −13→13
49446 measured reflectionsl = −23→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.079H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0464P)2 + 0.5233P] where P = (Fo2 + 2Fc2)/3
4424 reflections(Δ/σ)max = 0.001
315 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.44390 (14)0.49367 (14)0.63260 (8)0.0359 (3)
C20.49027 (16)0.44723 (15)0.70185 (8)0.0435 (4)
H20.55310.49210.72540.052*
C30.45354 (16)0.34984 (16)0.73449 (8)0.0437 (4)
H30.49450.33950.77820.052*
C40.36034 (14)0.25383 (14)0.71553 (8)0.0353 (3)
C50.47664 (14)0.65859 (13)0.55063 (8)0.0338 (3)
C60.55197 (15)0.75667 (14)0.53696 (8)0.0390 (4)
C70.52840 (17)0.82580 (15)0.47808 (9)0.0447 (4)
H70.57870.89170.47050.054*
C80.43056 (16)0.79770 (15)0.43042 (8)0.0418 (4)
C90.35753 (15)0.69853 (15)0.44191 (8)0.0385 (4)
C100.37961 (15)0.63019 (14)0.50161 (8)0.0374 (3)
H100.32890.56450.50900.045*
N10.50133 (13)0.59440 (12)0.61283 (7)0.0364 (3)
H1N0.5504 (19)0.6210 (18)0.6398 (10)0.047 (6)*
O10.36099 (12)0.44379 (11)0.59559 (6)0.0524 (3)
O20.29633 (10)0.25568 (10)0.65501 (6)0.0440 (3)
H2A0.31560.31540.63340.053*
O30.34614 (11)0.17281 (10)0.75610 (6)0.0439 (3)
Cl10.67690 (5)0.79432 (5)0.59434 (2)0.06029 (15)
Cl20.40225 (5)0.88690 (4)0.35759 (3)0.06031 (15)
Cl30.23559 (4)0.65766 (5)0.38355 (2)0.05600 (14)
C11−0.01578 (14)0.08037 (14)0.62405 (8)0.0356 (3)
C120.05760 (15)0.08711 (15)0.69170 (8)0.0405 (4)
H120.12000.14500.69530.049*
C130.04666 (15)0.02176 (16)0.74809 (8)0.0429 (4)
H130.10580.03980.78430.051*
C14−0.04107 (16)−0.07430 (17)0.76485 (9)0.0468 (4)
C15−0.04415 (14)0.19115 (14)0.51309 (7)0.0348 (3)
C16−0.00319 (16)0.29029 (15)0.47665 (8)0.0393 (4)
C17−0.05759 (17)0.32085 (16)0.41215 (8)0.0450 (4)
H17−0.02980.38800.38920.054*
C18−0.15340 (16)0.25164 (15)0.38159 (8)0.0410 (4)
C19−0.19375 (15)0.15206 (15)0.41656 (8)0.0374 (3)
C20−0.14062 (15)0.12225 (14)0.48168 (8)0.0380 (4)
H20−0.16960.05570.50460.046*
N20.01228 (14)0.16733 (13)0.57959 (7)0.0393 (3)
H2N0.0613 (18)0.2172 (17)0.5962 (9)0.044 (5)*
O4−0.09307 (13)0.00116 (12)0.60847 (6)0.0572 (4)
O5−0.12126 (16)−0.11735 (15)0.71730 (7)0.0818 (5)
H5A−0.1146−0.08180.68080.098*
O6−0.03687 (14)−0.11161 (13)0.82354 (7)0.0629 (4)
Cl40.11807 (5)0.37788 (4)0.51289 (2)0.05662 (14)
Cl5−0.22020 (5)0.29035 (5)0.30038 (2)0.06325 (15)
Cl6−0.31341 (4)0.06298 (4)0.38018 (2)0.05475 (14)
U11U22U33U12U13U23
C10.0387 (8)0.0346 (8)0.0336 (8)−0.0062 (6)−0.0006 (6)−0.0020 (6)
C20.0481 (10)0.0433 (9)0.0364 (8)−0.0128 (7)−0.0103 (7)−0.0004 (7)
C30.0486 (10)0.0459 (9)0.0335 (8)−0.0075 (8)−0.0123 (7)0.0040 (7)
C40.0341 (8)0.0345 (8)0.0363 (8)0.0035 (6)−0.0014 (6)0.0018 (7)
C50.0366 (8)0.0325 (8)0.0326 (7)−0.0023 (6)0.0044 (6)−0.0035 (6)
C60.0420 (9)0.0372 (8)0.0376 (8)−0.0096 (7)0.0035 (7)−0.0066 (7)
C70.0546 (10)0.0372 (9)0.0435 (9)−0.0113 (7)0.0107 (8)−0.0004 (7)
C80.0498 (10)0.0393 (9)0.0372 (8)0.0034 (7)0.0095 (7)0.0047 (7)
C90.0371 (8)0.0426 (9)0.0354 (8)0.0011 (7)0.0007 (7)−0.0016 (7)
C100.0367 (8)0.0378 (8)0.0373 (8)−0.0074 (7)0.0012 (7)0.0012 (7)
N10.0387 (7)0.0359 (7)0.0331 (7)−0.0101 (6)−0.0049 (6)−0.0018 (6)
O10.0594 (8)0.0510 (7)0.0427 (6)−0.0255 (6)−0.0165 (6)0.0126 (5)
O20.0467 (7)0.0429 (6)0.0398 (6)−0.0156 (5)−0.0099 (5)0.0095 (5)
O30.0487 (7)0.0372 (6)0.0441 (6)−0.0003 (5)−0.0035 (5)0.0105 (5)
Cl10.0609 (3)0.0657 (3)0.0520 (3)−0.0323 (2)−0.0066 (2)−0.0027 (2)
Cl20.0741 (3)0.0548 (3)0.0516 (3)0.0010 (2)0.0036 (2)0.0191 (2)
Cl30.0502 (3)0.0696 (3)0.0451 (2)−0.0060 (2)−0.01197 (19)0.0054 (2)
C110.0355 (8)0.0389 (8)0.0320 (8)−0.0030 (7)0.0002 (6)0.0020 (6)
C120.0358 (8)0.0466 (9)0.0377 (8)−0.0102 (7)−0.0041 (7)0.0043 (7)
C130.0402 (9)0.0516 (10)0.0347 (8)−0.0073 (7)−0.0081 (7)0.0046 (7)
C140.0491 (10)0.0495 (10)0.0403 (9)−0.0074 (8)−0.0043 (8)0.0098 (8)
C150.0392 (8)0.0366 (8)0.0278 (7)−0.0015 (6)−0.0002 (6)−0.0009 (6)
C160.0424 (9)0.0405 (9)0.0341 (8)−0.0096 (7)−0.0008 (7)−0.0007 (7)
C170.0541 (10)0.0454 (9)0.0346 (8)−0.0102 (8)−0.0006 (7)0.0069 (7)
C180.0465 (9)0.0473 (9)0.0282 (7)−0.0003 (7)−0.0024 (7)0.0022 (7)
C190.0386 (8)0.0404 (9)0.0325 (8)−0.0033 (7)−0.0006 (6)−0.0039 (6)
C200.0419 (9)0.0375 (8)0.0339 (8)−0.0056 (7)0.0006 (7)0.0010 (6)
N20.0435 (8)0.0411 (8)0.0316 (7)−0.0117 (6)−0.0057 (6)0.0031 (6)
O40.0698 (8)0.0597 (8)0.0385 (6)−0.0307 (7)−0.0139 (6)0.0111 (6)
O50.0967 (12)0.0929 (12)0.0499 (8)−0.0596 (10)−0.0235 (8)0.0280 (8)
O60.0715 (9)0.0722 (9)0.0433 (7)−0.0173 (7)−0.0040 (6)0.0210 (6)
Cl40.0632 (3)0.0586 (3)0.0450 (2)−0.0288 (2)−0.0107 (2)0.0078 (2)
Cl50.0709 (3)0.0774 (3)0.0373 (2)−0.0156 (3)−0.0160 (2)0.0162 (2)
Cl60.0557 (3)0.0606 (3)0.0443 (2)−0.0203 (2)−0.0140 (2)0.0024 (2)
C1—O11.2304 (18)C11—O41.2309 (19)
C1—N11.349 (2)C11—N21.346 (2)
C1—C21.485 (2)C11—C121.476 (2)
C2—C31.329 (2)C12—C131.328 (2)
C2—H20.9300C12—H120.9300
C3—C41.489 (2)C13—C141.484 (2)
C3—H30.9300C13—H130.9300
C4—O31.2121 (18)C14—O61.211 (2)
C4—O21.3111 (18)C14—O51.301 (2)
C5—C101.391 (2)C15—C201.390 (2)
C5—C61.398 (2)C15—C161.399 (2)
C5—N11.406 (2)C15—N21.404 (2)
C6—C71.380 (2)C16—C171.379 (2)
C6—Cl11.7274 (16)C16—Cl41.7315 (16)
C7—C81.380 (3)C17—C181.381 (2)
C7—H70.9300C17—H170.9300
C8—C91.383 (2)C18—C191.385 (2)
C8—Cl21.7292 (16)C18—Cl51.7301 (16)
C9—C101.387 (2)C19—C201.382 (2)
C9—Cl31.7240 (16)C19—Cl61.7292 (16)
C10—H100.9300C20—H200.9300
N1—H1N0.77 (2)N2—H2N0.81 (2)
O2—H2A0.8200O5—H5A0.8200
O1—C1—N1122.38 (14)O4—C11—N2122.58 (14)
O1—C1—C2123.03 (14)O4—C11—C12123.73 (14)
N1—C1—C2114.58 (13)N2—C11—C12113.65 (14)
C3—C2—C1128.39 (15)C13—C12—C11128.82 (15)
C3—C2—H2115.8C13—C12—H12115.6
C1—C2—H2115.8C11—C12—H12115.6
C2—C3—C4133.25 (15)C12—C13—C14132.80 (15)
C2—C3—H3113.4C12—C13—H13113.6
C4—C3—H3113.4C14—C13—H13113.6
O3—C4—O2120.49 (14)O6—C14—O5120.67 (16)
O3—C4—C3119.25 (14)O6—C14—C13118.86 (16)
O2—C4—C3120.25 (13)O5—C14—C13120.47 (15)
C10—C5—C6117.71 (14)C20—C15—C16117.90 (14)
C10—C5—N1123.25 (14)C20—C15—N2123.35 (14)
C6—C5—N1119.04 (14)C16—C15—N2118.74 (14)
C7—C6—C5121.26 (15)C17—C16—C15121.51 (15)
C7—C6—Cl1118.52 (13)C17—C16—Cl4118.70 (13)
C5—C6—Cl1120.22 (12)C15—C16—Cl4119.79 (12)
C6—C7—C8120.35 (15)C16—C17—C18119.95 (15)
C6—C7—H7119.8C16—C17—H17120.0
C8—C7—H7119.8C18—C17—H17120.0
C7—C8—C9119.22 (15)C17—C18—C19119.22 (14)
C7—C8—Cl2119.33 (13)C17—C18—Cl5119.50 (13)
C9—C8—Cl2121.46 (13)C19—C18—Cl5121.28 (13)
C8—C9—C10120.56 (15)C20—C19—C18120.96 (15)
C8—C9—Cl3121.27 (13)C20—C19—Cl6118.32 (12)
C10—C9—Cl3118.16 (13)C18—C19—Cl6120.72 (12)
C9—C10—C5120.85 (14)C19—C20—C15120.44 (15)
C9—C10—H10119.6C19—C20—H20119.8
C5—C10—H10119.6C15—C20—H20119.8
C1—N1—C5127.17 (14)C11—N2—C15128.30 (14)
C1—N1—H1N115.5 (15)C11—N2—H2N114.0 (13)
C5—N1—H1N117.3 (15)C15—N2—H2N117.0 (13)
C4—O2—H2A109.5C14—O5—H5A109.5
O1—C1—C2—C30.1 (3)O4—C11—C12—C13−7.6 (3)
N1—C1—C2—C3−178.97 (18)N2—C11—C12—C13174.36 (18)
C1—C2—C3—C41.6 (3)C11—C12—C13—C14−2.5 (3)
C2—C3—C4—O3179.39 (19)C12—C13—C14—O6−173.1 (2)
C2—C3—C4—O20.8 (3)C12—C13—C14—O56.7 (3)
C10—C5—C6—C72.3 (2)C20—C15—C16—C171.2 (2)
N1—C5—C6—C7−177.16 (15)N2—C15—C16—C17−177.78 (16)
C10—C5—C6—Cl1−178.08 (12)C20—C15—C16—Cl4−179.11 (13)
N1—C5—C6—Cl12.4 (2)N2—C15—C16—Cl41.9 (2)
C5—C6—C7—C8−1.3 (3)C15—C16—C17—C18−1.2 (3)
Cl1—C6—C7—C8179.06 (13)Cl4—C16—C17—C18179.12 (14)
C6—C7—C8—C9−0.9 (3)C16—C17—C18—C190.1 (3)
C6—C7—C8—Cl2179.30 (13)C16—C17—C18—Cl5−179.56 (14)
C7—C8—C9—C102.0 (2)C17—C18—C19—C200.8 (3)
Cl2—C8—C9—C10−178.14 (13)Cl5—C18—C19—C20−179.46 (13)
C7—C8—C9—Cl3−178.97 (13)C17—C18—C19—Cl6180.00 (14)
Cl2—C8—C9—Cl30.9 (2)Cl5—C18—C19—Cl6−0.3 (2)
C8—C9—C10—C5−1.0 (2)C18—C19—C20—C15−0.8 (3)
Cl3—C9—C10—C5179.95 (12)Cl6—C19—C20—C15−179.99 (12)
C6—C5—C10—C9−1.1 (2)C16—C15—C20—C19−0.2 (2)
N1—C5—C10—C9178.32 (15)N2—C15—C20—C19178.71 (15)
O1—C1—N1—C51.4 (3)O4—C11—N2—C155.9 (3)
C2—C1—N1—C5−179.53 (15)C12—C11—N2—C15−176.01 (16)
C10—C5—N1—C15.1 (3)C20—C15—N2—C11−1.6 (3)
C6—C5—N1—C1−175.47 (15)C16—C15—N2—C11177.28 (16)
D—H···AD—HH···AD···AD—H···A
O2—H2A···O10.821.692.5080 (15)175
O5—H5A···O40.821.722.5332 (17)175
N1—H1N···O3i0.77 (2)2.30 (2)3.0356 (18)161.2 (19)
N2—H2N···O6ii0.81 (2)2.481 (19)3.0775 (19)131.3 (16)
N1—H1N···Cl10.77 (2)2.56 (2)2.9628 (14)114.2 (17)
N2—H2N···Cl40.81 (2)2.519 (18)2.9476 (14)114.3 (15)
C2—H2···O3i0.932.293.123 (2)149
C12—H12···O20.932.473.330 (2)154
C–Cl···OCl···OC–Cl···O
C9–Cl3···O6iii3.1267 (15)158.99 (6)
C16–Cl4···O13.0523 (12)159.62 (7)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2A⋯O10.821.692.5080 (15)175
O5—H5A⋯O40.821.722.5332 (17)175
N1—H1N⋯O3i0.77 (2)2.30 (2)3.0356 (18)161.2 (19)
N2—H2N⋯O6ii0.81 (2)2.481 (19)3.0775 (19)131.3 (16)
N1—H1N⋯Cl10.77 (2)2.56 (2)2.9628 (14)114.2 (17)
N2—H2N⋯Cl40.81 (2)2.519 (18)2.9476 (14)114.3 (15)
C2—H2⋯O3i0.932.293.123 (2)149
C12—H12⋯O20.932.473.330 (2)154

Symmetry codes: (i) ; (ii) .

Table 2

Halogen-bond geometry (Å, °)

C—Cl⋯OCl⋯OC—Cl⋯O
C9—Cl3⋯O6iii3.1267 (15)158.99 (6)
C16—Cl4⋯O13.0523 (12)159.62 (7)

Symmetry code: (iii)

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Halogen bonds as orthogonal molecular interactions to hydrogen bonds.

Authors:  Andrea Regier Voth; Patricia Khuu; Keita Oishi; P Shing Ho
Journal:  Nat Chem       Date:  2009-04       Impact factor: 24.427

3.  N-(2,5-Dichloro-phen-yl)maleamic acid.

Authors:  K Shakuntala; B Thimme Gowda; Miroslav Tokarčík; Jozef Kožíšek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-18

4.  N-Phenyl-maleamic acid.

Authors:  Kong Mun Lo; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-25

5.  N-(2,4,6-Trimethyl-phen-yl)maleamic acid.

Authors:  B Thimme Gowda; Miroslav Tokarčík; Jozef Kožíšek; K Shakuntala; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-31

6.  N-(3,5-Dichloro-phen-yl)maleamic acid.

Authors:  B Thimme Gowda; Miroslav Tokarčík; Jozef Kožíšek; K Shakuntala; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-04

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

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