Literature DB >> 21580045

An inter-molecular dative B←N bond in 5-(4,4,5,5-tetra-methyl-1,3,2-dioxa-borolan-2-yl)-1,3-thia-zole.

Jana Sopková-de Oliveira Santos, Nicolas Primas, Jean-François Lohier, Alexandre Bouillon, Sylvain Rault.   

Abstract

The title compound, C(9)H(14)BNO(2)S, is in an unusual bend conformation and the B atom of one mol-ecule within the crystal forms an inter-molecular dative bond with the N atom of a neighbouring mol-ecule, an infrequent phenomenon in boronic derivative crystals.

Entities:  

Year:  2009        PMID: 21580045      PMCID: PMC2980002          DOI: 10.1107/S1600536809052775

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related natural compounds, see: Dondoni & Merino (1996 ▶); Faulkner (1998 ▶); Hutchinson et al. (2000 ▶); Kalgutkar et al. (1996 ▶); Ogino et al. (1996 ▶); Williams & Jacobs (1993 ▶). For boronic esters, see: Allen (2002 ▶); Höpfl (1999 ▶); Hall (2005 ▶); Rettig & Trotter (1975 ▶); Sopková-de Oliveira Santos et al. (2003a ▶,b ▶). For details of the synthesis, see: Primas et al. (2008 ▶, 2009 ▶).

Experimental

Crystal data

C9H14BNO2S M = 211.08 Monoclinic, a = 12.6169 (3) Å b = 7.9845 (2) Å c = 12.6679 (3) Å β = 119.064 (1)° V = 1115.46 (5) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 296 K 0.53 × 0.36 × 0.32 mm

Data collection

Bruker APEXII CCD area-detector diffractometer 42058 measured reflections 5399 independent reflections 3895 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.159 S = 1.04 5399 reflections 139 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.87 e Å−3 Δρmin = −0.68 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809052775/dn2507sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809052775/dn2507Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H14BNO2SF(000) = 448
Mr = 211.08Dx = 1.257 Mg m3
Monoclinic, P21/cMelting point: 371 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 12.6169 (3) ÅCell parameters from 9543 reflections
b = 7.9845 (2) Åθ = 3.2–35.8°
c = 12.6679 (3) ŵ = 0.26 mm1
β = 119.064 (1)°T = 296 K
V = 1115.46 (5) Å3Plate, colourless
Z = 40.53 × 0.36 × 0.32 mm
Bruker APEXII CCD area-detector diffractometer3895 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.023
graphiteθmax = 36.4°, θmin = 1.9°
φ and ω scansh = −21→21
42058 measured reflectionsk = −10→13
5399 independent reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.159H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0814P)2 + 0.2917P] where P = (Fo2 + 2Fc2)/3
5399 reflections(Δ/σ)max < 0.001
139 parametersΔρmax = 0.87 e Å3
0 restraintsΔρmin = −0.68 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.16573 (3)0.62779 (5)0.44438 (3)0.04720 (12)
C20.06243 (12)0.77776 (17)0.42356 (10)0.0386 (3)
H20.0698 (18)0.848 (3)0.4859 (19)0.057 (5)*
N3−0.02480 (8)0.78577 (10)0.31137 (8)0.02725 (16)
C4−0.00940 (10)0.67047 (14)0.23876 (10)0.0305 (2)
H4−0.0704 (14)0.667 (2)0.1570 (15)0.040 (4)*
C50.08968 (9)0.57082 (12)0.29535 (9)0.02743 (18)
B10.13725 (10)0.41927 (13)0.24402 (10)0.02591 (19)
O20.24223 (7)0.34057 (10)0.33978 (7)0.02967 (16)
O10.16342 (7)0.46160 (10)0.14816 (7)0.03061 (16)
C60.29217 (10)0.43640 (17)0.19662 (10)0.0343 (2)
C80.31785 (16)0.3921 (3)0.09484 (14)0.0580 (4)
H8A0.40320.37330.12710.087*
H8B0.29250.48270.03780.087*
H8C0.27410.29240.05510.087*
C90.35543 (14)0.6010 (2)0.25586 (15)0.0492 (3)
H9A0.32130.69060.19850.074*
H9B0.44050.59190.28210.074*
H9C0.34410.62380.32410.074*
C70.31999 (10)0.29495 (15)0.29088 (10)0.0332 (2)
C100.44987 (12)0.2890 (2)0.39326 (14)0.0501 (3)
H10A0.46740.38910.44080.075*
H10B0.50410.28070.36050.075*
H10C0.46020.19330.44330.075*
C110.28385 (15)0.12147 (19)0.23354 (16)0.0519 (4)
H11A0.28240.04430.29090.078*
H11B0.34160.08420.20990.078*
H11C0.20480.12690.16380.078*
U11U22U33U12U13U23
S10.04648 (19)0.0520 (2)0.02922 (15)0.02133 (14)0.00746 (12)−0.00218 (12)
C20.0423 (6)0.0395 (6)0.0296 (5)0.0097 (5)0.0139 (4)−0.0041 (4)
N30.0284 (4)0.0240 (3)0.0294 (4)0.0009 (3)0.0141 (3)−0.0013 (3)
C40.0298 (4)0.0294 (4)0.0292 (4)0.0042 (3)0.0119 (4)−0.0028 (3)
C50.0281 (4)0.0246 (4)0.0301 (4)0.0011 (3)0.0146 (3)0.0003 (3)
B10.0258 (4)0.0243 (4)0.0283 (4)0.0008 (3)0.0136 (4)0.0013 (3)
O20.0293 (3)0.0315 (3)0.0278 (3)0.0057 (3)0.0136 (3)0.0029 (3)
O10.0275 (3)0.0366 (4)0.0288 (3)−0.0002 (3)0.0145 (3)0.0041 (3)
C60.0288 (4)0.0471 (6)0.0304 (4)−0.0017 (4)0.0171 (4)−0.0033 (4)
C80.0505 (8)0.0937 (13)0.0402 (7)0.0083 (8)0.0303 (6)−0.0025 (7)
C90.0424 (7)0.0543 (8)0.0497 (7)−0.0174 (6)0.0214 (6)−0.0024 (6)
C70.0279 (4)0.0376 (5)0.0312 (5)0.0053 (4)0.0120 (4)−0.0054 (4)
C100.0312 (5)0.0667 (9)0.0426 (6)0.0123 (6)0.0103 (5)−0.0041 (6)
C110.0541 (8)0.0399 (6)0.0550 (8)0.0094 (6)0.0212 (7)−0.0123 (6)
S1—C21.6936 (12)C6—C71.5548 (17)
S1—C51.7122 (11)C8—H8A0.9600
C2—N31.3097 (15)C8—H8B0.9600
C2—H20.94 (2)C8—H8C0.9600
N3—C41.3803 (13)C9—H9A0.9600
N3—B1i1.6354 (14)C9—H9B0.9600
C4—C51.3561 (14)C9—H9C0.9600
C4—H40.945 (16)C7—C101.5182 (17)
C5—B11.6207 (15)C7—C111.5273 (18)
B1—O21.4351 (13)C10—H10A0.9600
B1—O11.4447 (13)C10—H10B0.9600
B1—N3ii1.6354 (14)C10—H10C0.9600
O2—C71.4386 (13)C11—H11A0.9600
O1—C61.4448 (13)C11—H11B0.9600
C6—C81.5159 (17)C11—H11C0.9600
C6—C91.5318 (19)
C2—S1—C592.26 (5)H8A—C8—H8B109.5
N3—C2—S1112.39 (8)C6—C8—H8C109.5
N3—C2—H2125.0 (13)H8A—C8—H8C109.5
S1—C2—H2122.6 (13)H8B—C8—H8C109.5
C2—N3—C4111.99 (9)C6—C9—H9A109.5
C2—N3—B1i126.44 (9)C6—C9—H9B109.5
C4—N3—B1i121.50 (8)H9A—C9—H9B109.5
C5—C4—N3115.54 (10)C6—C9—H9C109.5
C5—C4—H4127.7 (11)H9A—C9—H9C109.5
N3—C4—H4116.7 (11)H9B—C9—H9C109.5
C4—C5—B1130.68 (9)O2—C7—C10108.61 (10)
C4—C5—S1107.81 (8)O2—C7—C11109.02 (11)
B1—C5—S1121.49 (7)C10—C7—C11109.07 (12)
O2—B1—O1108.61 (8)O2—C7—C6101.54 (8)
O2—B1—C5110.94 (8)C10—C7—C6115.23 (12)
O1—B1—C5116.29 (8)C11—C7—C6112.94 (11)
O2—B1—N3ii109.23 (8)C7—C10—H10A109.5
O1—B1—N3ii107.26 (8)C7—C10—H10B109.5
C5—B1—N3ii104.22 (8)H10A—C10—H10B109.5
B1—O2—C7106.82 (8)C7—C10—H10C109.5
B1—O1—C6106.21 (8)H10A—C10—H10C109.5
O1—C6—C8109.38 (10)H10B—C10—H10C109.5
O1—C6—C9107.41 (11)C7—C11—H11A109.5
C8—C6—C9109.94 (12)C7—C11—H11B109.5
O1—C6—C7102.43 (8)H11A—C11—H11B109.5
C8—C6—C7114.97 (12)C7—C11—H11C109.5
C9—C6—C7112.19 (10)H11A—C11—H11C109.5
C6—C8—H8A109.5H11B—C11—H11C109.5
C6—C8—H8B109.5
O1—C6—C7—O2−37.74 (10)
D—H···AD—HH···AD···AD—H···A
C2—H2···O1iii0.94 (2)2.36 (2)3.2446 (14)157.5 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O1i0.94 (2)2.36 (2)3.2446 (14)157.5 (17)

Symmetry code: (i) .

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