Literature DB >> 21580006

2-Carb-oxy-1-(3-nitro-phen-yl)ethanaminium perchlorate.

Wen-Xian Liang1, Yan Li, Gang Wang, Zhi-Rong Qu.   

Abstract

In the cation of the title compound, C(9)H(11)N(2)O(4) (+)·ClO(4) (-), the conformation is stabilized by an intra-molecular N-H⋯O hydrogen bond. In the crystal packing, centrosymmetrically related cations inter-act through inter-molecular O-H⋯O hydrogen bonds involving the carb-oxy groups, forming dimers. The dimers and the perchlorate anions are further linked into layers parallel to the ab plane by C-H⋯O and N-H⋯O hydrogen-bonding inter-actions.

Entities:  

Year:  2009        PMID: 21580006      PMCID: PMC2980062          DOI: 10.1107/S1600536809051319

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of β-amino acids, see: Cohen et al. (2002 ▶); Qu et al. (2004 ▶); Zhao (2007 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶); Etter et al. (1990 ▶).

Experimental

Crystal data

C9H11N2O4 +·ClO4 M = 310.65 Triclinic, a = 7.5932 (8) Å b = 7.8843 (1) Å c = 11.8615 (6) Å α = 94.745 (3)° β = 99.780 (7)° γ = 116.323 (4)° V = 617.11 (7) Å3 Z = 2 Mo Kα radiation μ = 0.35 mm−1 T = 293 K 0.45 × 0.30 × 0.15 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.884, T max = 0.950 6395 measured reflections 2799 independent reflections 1732 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.237 S = 0.99 2799 reflections 183 parameters H-atom parameters constrained Δρmax = 0.58 e Å−3 Δρmin = −0.53 e Å−3 Data collection: CrystalClear (Rigaku 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: PRPKAPPA (Ferguson, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809051319/rz2399sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809051319/rz2399Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H11N2O4+·ClO4Z = 2
Mr = 310.65F(000) = 320
Triclinic, P1Dx = 1.672 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.5932 (8) ÅCell parameters from 1641 reflections
b = 7.8843 (1) Åθ = 3.1–27.5°
c = 11.8615 (6) ŵ = 0.35 mm1
α = 94.745 (3)°T = 293 K
β = 99.780 (7)°Prism, colourless
γ = 116.323 (4)°0.45 × 0.30 × 0.15 mm
V = 617.11 (7) Å3
Rigaku SCXmini diffractometer2799 independent reflections
Radiation source: fine-focus sealed tube1732 reflections with I > 2σ(I)
graphiteRint = 0.049
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 2.9°
CCD Profile fitting scansh = −9→9
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −10→10
Tmin = 0.884, Tmax = 0.950l = −15→15
6395 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.058H-atom parameters constrained
wR(F2) = 0.237w = 1/[σ2(Fo2) + (0.1426P)2] where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max < 0.001
2799 reflectionsΔρmax = 0.58 e Å3
183 parametersΔρmin = −0.53 e Å3
0 restraintsExtinction correction: SHELXL
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0014 (1)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.34320 (15)0.01534 (15)0.65117 (8)0.0463 (4)
O50.3304 (6)−0.1381 (5)0.5737 (3)0.0772 (11)
O60.5400 (5)0.1058 (5)0.7279 (3)0.0763 (11)
O70.1979 (6)−0.0555 (6)0.7205 (3)0.0867 (13)
O80.3233 (9)0.1574 (7)0.5920 (3)0.0996 (16)
O40.1696 (4)0.4174 (4)0.4775 (2)0.0423 (7)
O30.0141 (5)0.5359 (5)0.3563 (2)0.0523 (8)
H3−0.02340.55920.41380.079*
C30.7013 (5)0.4845 (5)0.1024 (3)0.0343 (8)
C20.6238 (5)0.4860 (5)0.1994 (3)0.0346 (8)
H20.68880.59080.26020.042*
C10.4454 (5)0.3264 (5)0.2039 (3)0.0315 (7)
N10.8866 (5)0.6592 (5)0.0985 (3)0.0467 (9)
N20.2618 (5)0.1458 (5)0.3442 (3)0.0444 (8)
H2A0.22650.15910.41100.067*
H2B0.34900.09840.35360.067*
H2C0.15250.06590.28960.067*
C90.1278 (5)0.4556 (5)0.3827 (3)0.0345 (8)
C70.3587 (5)0.3383 (5)0.3081 (3)0.0338 (8)
H70.46960.42780.37280.041*
C60.3520 (5)0.1742 (5)0.1112 (3)0.0366 (8)
H60.23220.06830.11360.044*
O10.9505 (5)0.6627 (5)0.0093 (3)0.0696 (10)
C50.4334 (6)0.1763 (6)0.0143 (3)0.0386 (8)
H50.36820.0730−0.04750.046*
O20.9618 (5)0.7907 (5)0.1799 (3)0.0722 (10)
C40.6139 (6)0.3347 (6)0.0106 (3)0.0394 (9)
H40.67280.3382−0.05240.047*
C80.2089 (6)0.4171 (6)0.2816 (3)0.0370 (8)
H8A0.27410.53610.25280.044*
H8B0.09600.32630.21980.044*
U11U22U33U12U13U23
Cl10.0496 (6)0.0469 (6)0.0457 (6)0.0250 (5)0.0138 (4)0.0040 (4)
O50.077 (3)0.055 (2)0.092 (3)0.0231 (19)0.034 (2)−0.0077 (19)
O60.054 (2)0.071 (2)0.082 (2)0.0171 (19)−0.0018 (18)0.013 (2)
O70.062 (2)0.103 (3)0.084 (3)0.023 (2)0.040 (2)0.002 (2)
O80.185 (5)0.119 (3)0.047 (2)0.119 (4)0.017 (2)0.022 (2)
O40.0490 (15)0.0624 (18)0.0341 (14)0.0396 (15)0.0155 (12)0.0111 (12)
O30.0618 (18)0.086 (2)0.0394 (14)0.0580 (18)0.0179 (14)0.0155 (15)
C30.0284 (17)0.041 (2)0.0417 (19)0.0200 (16)0.0139 (15)0.0149 (16)
C20.0292 (18)0.0376 (19)0.0381 (19)0.0168 (16)0.0071 (15)0.0057 (15)
C10.0296 (17)0.0360 (18)0.0319 (17)0.0174 (15)0.0082 (14)0.0056 (14)
N10.0353 (18)0.049 (2)0.065 (2)0.0217 (17)0.0210 (17)0.0245 (19)
N20.056 (2)0.052 (2)0.0401 (17)0.0335 (18)0.0215 (16)0.0162 (15)
C90.0336 (18)0.0391 (19)0.0350 (18)0.0198 (16)0.0111 (15)0.0045 (15)
C70.0297 (17)0.0371 (19)0.0349 (18)0.0149 (15)0.0101 (14)0.0070 (15)
C60.0341 (18)0.0330 (18)0.0413 (19)0.0137 (16)0.0119 (15)0.0046 (15)
O10.062 (2)0.080 (2)0.088 (2)0.0352 (19)0.053 (2)0.041 (2)
C50.042 (2)0.040 (2)0.0376 (19)0.0215 (18)0.0115 (16)0.0028 (16)
O20.055 (2)0.054 (2)0.074 (2)−0.0025 (17)0.0133 (18)0.0074 (19)
C40.043 (2)0.056 (2)0.0359 (18)0.032 (2)0.0193 (16)0.0173 (17)
C80.043 (2)0.045 (2)0.0356 (18)0.0273 (18)0.0198 (16)0.0116 (16)
Cl1—O51.414 (3)N1—O11.234 (4)
Cl1—O81.419 (4)N2—C71.501 (5)
Cl1—O71.429 (4)N2—H2A0.8900
Cl1—O61.433 (4)N2—H2B0.8900
O4—C91.214 (4)N2—H2C0.8900
O3—C91.292 (4)C9—C81.506 (4)
O3—H30.8200C7—C81.521 (5)
C3—C41.366 (5)C7—H70.9800
C3—C21.380 (5)C6—C51.392 (5)
C3—N11.481 (5)C6—H60.9300
C2—C11.395 (5)C5—C41.397 (5)
C2—H20.9300C5—H50.9300
C1—C61.384 (5)C4—H40.9300
C1—C71.511 (5)C8—H8A0.9700
N1—O21.207 (5)C8—H8B0.9700
O5—Cl1—O8111.9 (2)O4—C9—O3125.3 (3)
O5—Cl1—O7110.5 (2)O4—C9—C8122.8 (3)
O8—Cl1—O7111.6 (3)O3—C9—C8111.9 (3)
O5—Cl1—O6107.7 (2)N2—C7—C1111.0 (3)
O8—Cl1—O6107.2 (3)N2—C7—C8111.1 (3)
O7—Cl1—O6107.7 (2)C1—C7—C8110.1 (3)
C9—O3—H3109.5N2—C7—H7108.2
C4—C3—C2123.7 (3)C1—C7—H7108.2
C4—C3—N1119.4 (3)C8—C7—H7108.2
C2—C3—N1116.9 (3)C1—C6—C5121.4 (3)
C3—C2—C1118.3 (3)C1—C6—H6119.3
C3—C2—H2120.9C5—C6—H6119.3
C1—C2—H2120.9C6—C5—C4119.4 (3)
C6—C1—C2119.1 (3)C6—C5—H5120.3
C6—C1—C7124.0 (3)C4—C5—H5120.3
C2—C1—C7116.7 (3)C3—C4—C5117.9 (3)
O2—N1—O1124.1 (4)C3—C4—H4121.0
O2—N1—C3118.7 (3)C5—C4—H4121.0
O1—N1—C3117.1 (4)C9—C8—C7115.3 (3)
C7—N2—H2A109.5C9—C8—H8A108.4
C7—N2—H2B109.5C7—C8—H8A108.4
H2A—N2—H2B109.5C9—C8—H8B108.4
C7—N2—H2C109.5C7—C8—H8B108.4
H2A—N2—H2C109.5H8A—C8—H8B107.5
H2B—N2—H2C109.5
D—H···AD—HH···AD···AD—H···A
N2—H2A···O40.892.362.953 (4)124
N2—H2A···O80.892.152.884 (5)139
N2—H2B···O5i0.892.313.113 (5)150
N2—H2B···O6i0.892.343.120 (5)147
N2—H2C···O2ii0.892.152.960 (5)152
O3—H3···O4iii0.821.892.690 (4)167
C2—H2···O8iv0.932.583.420 (5)150
C6—H6···O2ii0.932.543.445 (5)163
C8—H8A···O6iv0.972.503.403 (5)154
C8—H8B···O7v0.972.573.134 (6)117
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O40.892.362.953 (4)124
N2—H2A⋯O80.892.152.884 (5)139
N2—H2B⋯O5i0.892.313.113 (5)150
N2—H2B⋯O6i0.892.343.120 (5)147
N2—H2C⋯O2ii0.892.152.960 (5)152
O3—H3⋯O4iii0.821.892.690 (4)167
C2—H2⋯O8iv0.932.583.420 (5)150
C6—H6⋯O2ii0.932.543.445 (5)163
C8—H8A⋯O6iv0.972.503.403 (5)154
C8—H8B⋯O7v0.972.573.134 (6)117

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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