Literature DB >> 21579992

Tris[2-(2-pyridylsulfan-yl)eth-yl]ammonium perchlorate.

Yan An1, Xiao-Feng Li, Hui-Guo Chen, Li-Hua Dong.   

Abstract

In the title molecular salt, C(21)H(25)N(4)S(3) (+)·ClO(4) (-), an intra-molecular N-H⋯N n class="Chemical">hydrogen bond stabilizes the conformation of the cation. The three N-C-C-S torsion angles are 91.7 (2), 100.9 (2) and 167.02 (14)°.

Entities:  

Year:  2009        PMID: 21579992      PMCID: PMC2980172          DOI: 10.1107/S1600536809052283

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For tripodal ligands as recognition reagents towards small mol­ecules or ions, see: Bretonniere et al. (2000 ▶). For a benzene-based tripodal oxazoline as an efficient recognition system for some alkyl­ammonium ions for clinical applications, see: Kim & Ahn (2000 ▶). For the complexation structures and Ln/An selectivities of tripodal N-donor ligands, see: Wietzke et al. (1998 ▶).

Experimental

Crystal data

C21H25N4S3n class="Chemical">ClO4 − M = 529.08 Triclinic, a = 8.5480 (7) Å b = 11.9753 (10) Å c = 12.9346 (11) Å α = 110.884 (4)° β = 99.609 (4)° γ = 91.774 (4)° V = 1213.81 (18) Å3 Z = 2 Mo Kα radiation μ = 0.45 mm−1 T = 296 K 0.37 × 0.35 × 0.33 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.846, T max = 0.862 6994 measured reflections 4726 independent reflections 3936 reflections with I > 2σ(I) R int = 0.010

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.105 S = 1.03 4726 reflections 302 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.50 e Å−3 Δρmin = −0.43 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809052283/bx2246sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809052283/bx2246Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H25N4S3+·ClO4Z = 2
Mr = 529.08F(000) = 552
Triclinic, P1Dx = 1.448 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.5480 (7) ÅCell parameters from 3657 reflections
b = 11.9753 (10) Åθ = 2.4–28.5°
c = 12.9346 (11) ŵ = 0.45 mm1
α = 110.884 (4)°T = 296 K
β = 99.609 (4)°Block, yellow
γ = 91.774 (4)°0.37 × 0.35 × 0.33 mm
V = 1213.81 (18) Å3
Bruker APEXII CCD diffractometer4726 independent reflections
Radiation source: fine-focus sealed tube3936 reflections with I > 2σ(I)
graphiteRint = 0.010
φ and ω scansθmax = 26.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −10→10
Tmin = 0.846, Tmax = 0.862k = −14→14
6994 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0436P)2 + 0.6528P] where P = (Fo2 + 2Fc2)/3
4726 reflections(Δ/σ)max = 0.001
302 parametersΔρmax = 0.50 e Å3
0 restraintsΔρmin = −0.42 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6881 (3)0.46034 (19)0.84074 (18)0.0474 (5)
H1A0.57870.47560.82040.057*
H1B0.71810.49410.92230.057*
C20.6983 (3)0.32631 (19)0.80047 (18)0.0496 (5)
H2A0.67850.29880.85950.060*
H2B0.80640.31110.78980.060*
C30.6641 (3)0.24033 (19)0.56478 (18)0.0474 (5)
C40.6269 (3)0.1444 (2)0.4618 (2)0.0632 (6)
H40.55270.08100.45120.076*
C50.7022 (4)0.1453 (2)0.3761 (2)0.0703 (8)
H50.67910.08250.30640.084*
C60.8115 (3)0.2394 (2)0.3942 (2)0.0656 (7)
H60.86430.24150.33750.079*
C70.8414 (3)0.3303 (2)0.49763 (19)0.0569 (6)
H70.91610.39390.50970.068*
C80.9644 (2)0.53834 (19)0.85158 (17)0.0443 (5)
H8A0.98450.47160.87620.053*
H8B0.98140.61150.91810.053*
C91.0806 (3)0.5451 (2)0.77764 (19)0.0532 (5)
H9A1.04680.59920.73940.064*
H9B1.08200.46620.72080.064*
C101.2649 (3)0.7542 (2)0.91802 (19)0.0487 (5)
C111.3855 (3)0.8231 (3)1.0063 (2)0.0660 (7)
H111.47060.78831.03350.079*
C121.3746 (4)0.9446 (3)1.0520 (2)0.0781 (9)
H121.45170.99351.11240.094*
C131.2506 (4)0.9930 (3)1.0086 (2)0.0755 (8)
H131.24211.07521.03800.091*
C141.1389 (3)0.9186 (2)0.9210 (2)0.0643 (6)
H141.05500.95250.89140.077*
C150.7377 (3)0.64094 (18)0.79479 (18)0.0481 (5)
H15A0.82730.69330.79570.058*
H15B0.69800.67840.86390.058*
C160.6077 (3)0.6288 (2)0.6955 (2)0.0555 (6)
H16A0.55020.69980.71500.067*
H16B0.53300.56020.68190.067*
C170.7470 (2)0.75988 (19)0.58998 (17)0.0447 (5)
C180.7867 (3)0.7806 (2)0.49839 (19)0.0523 (5)
H180.77910.71800.42930.063*
C190.8374 (3)0.8954 (2)0.5120 (2)0.0577 (6)
H190.86310.91240.45180.069*
C200.8496 (3)0.9850 (2)0.6158 (2)0.0580 (6)
H200.88481.06360.62760.070*
C210.8088 (3)0.9557 (2)0.7016 (2)0.0565 (6)
H210.81761.01680.77170.068*
Cl10.81316 (7)0.76318 (5)0.16119 (4)0.05665 (17)
N10.7943 (2)0.52226 (15)0.79143 (14)0.0386 (4)
N20.7689 (2)0.33273 (15)0.58241 (14)0.0462 (4)
N31.1428 (2)0.79961 (17)0.87518 (15)0.0518 (4)
N40.7570 (2)0.84479 (16)0.69109 (15)0.0509 (4)
O10.9039 (3)0.73699 (19)0.25035 (17)0.0908 (7)
O20.6898 (4)0.6723 (2)0.0992 (3)0.1414 (12)
O30.9173 (4)0.7694 (3)0.0890 (2)0.1406 (12)
O40.7508 (3)0.87338 (17)0.20429 (19)0.0944 (7)
S10.56374 (8)0.23770 (6)0.67216 (6)0.06351 (19)
S21.27812 (8)0.59780 (6)0.86105 (7)0.0685 (2)
S30.67777 (9)0.61051 (5)0.56746 (5)0.06103 (18)
H1N0.791 (3)0.475 (2)0.724 (2)0.050 (6)*
U11U22U33U12U13U23
C10.0515 (12)0.0535 (12)0.0436 (11)0.0084 (10)0.0196 (9)0.0205 (9)
C20.0546 (13)0.0534 (12)0.0505 (12)0.0039 (10)0.0125 (10)0.0295 (10)
C30.0491 (12)0.0422 (11)0.0473 (11)0.0100 (9)0.0029 (9)0.0143 (9)
C40.0681 (16)0.0439 (12)0.0605 (15)0.0037 (11)−0.0066 (12)0.0071 (11)
C50.0872 (19)0.0593 (15)0.0434 (13)0.0265 (14)−0.0040 (13)−0.0003 (11)
C60.0836 (18)0.0672 (16)0.0425 (12)0.0241 (14)0.0161 (12)0.0128 (11)
C70.0699 (15)0.0554 (13)0.0446 (12)0.0092 (11)0.0172 (11)0.0144 (10)
C80.0481 (12)0.0448 (11)0.0398 (10)0.0066 (9)0.0090 (9)0.0149 (9)
C90.0572 (13)0.0457 (12)0.0538 (13)0.0053 (10)0.0207 (11)0.0103 (10)
C100.0415 (11)0.0615 (13)0.0503 (12)0.0014 (10)0.0126 (9)0.0276 (10)
C110.0460 (13)0.098 (2)0.0656 (15)−0.0117 (13)0.0021 (11)0.0491 (15)
C120.082 (2)0.088 (2)0.0523 (15)−0.0362 (17)0.0042 (14)0.0187 (14)
C130.093 (2)0.0581 (16)0.0667 (17)−0.0100 (15)0.0238 (16)0.0102 (13)
C140.0744 (17)0.0574 (15)0.0598 (15)0.0143 (13)0.0158 (13)0.0181 (12)
C150.0603 (13)0.0386 (11)0.0450 (11)0.0110 (9)0.0097 (10)0.0144 (9)
C160.0539 (13)0.0546 (13)0.0635 (14)0.0028 (10)0.0041 (11)0.0316 (11)
C170.0435 (11)0.0458 (11)0.0434 (11)0.0053 (9)0.0009 (9)0.0179 (9)
C180.0502 (12)0.0589 (13)0.0450 (12)0.0086 (10)0.0101 (10)0.0151 (10)
C190.0571 (14)0.0680 (15)0.0571 (14)0.0037 (11)0.0174 (11)0.0312 (12)
C200.0588 (14)0.0506 (13)0.0671 (15)−0.0020 (11)0.0086 (12)0.0265 (12)
C210.0683 (15)0.0466 (12)0.0492 (12)0.0028 (11)0.0064 (11)0.0137 (10)
Cl10.0721 (4)0.0453 (3)0.0425 (3)0.0206 (3)0.0058 (3)0.0051 (2)
N10.0486 (10)0.0367 (8)0.0307 (8)0.0061 (7)0.0114 (7)0.0107 (7)
N20.0536 (10)0.0424 (9)0.0399 (9)0.0065 (8)0.0100 (8)0.0112 (7)
N30.0539 (11)0.0553 (11)0.0431 (10)0.0090 (9)0.0077 (8)0.0149 (8)
N40.0639 (12)0.0463 (10)0.0417 (9)0.0041 (8)0.0065 (8)0.0166 (8)
O10.1193 (18)0.0864 (14)0.0666 (12)0.0355 (13)0.0050 (12)0.0317 (11)
O20.126 (2)0.0691 (15)0.160 (3)−0.0060 (14)−0.041 (2)−0.0091 (16)
O30.174 (3)0.184 (3)0.0901 (18)0.067 (2)0.075 (2)0.0556 (19)
O40.1193 (18)0.0551 (11)0.0962 (15)0.0403 (11)0.0168 (13)0.0118 (10)
S10.0563 (4)0.0638 (4)0.0661 (4)−0.0120 (3)0.0106 (3)0.0206 (3)
S20.0469 (3)0.0638 (4)0.1021 (5)0.0159 (3)0.0218 (3)0.0347 (4)
S30.0852 (5)0.0449 (3)0.0473 (3)−0.0027 (3)−0.0015 (3)0.0172 (2)
C1—N11.506 (3)C12—C131.358 (4)
C1—C21.511 (3)C12—H120.9300
C1—H1A0.9700C13—C141.362 (4)
C1—H1B0.9700C13—H130.9300
C2—S11.798 (2)C14—N31.337 (3)
C2—H2A0.9700C14—H140.9300
C2—H2B0.9700C15—N11.504 (2)
C3—N21.330 (3)C15—C161.512 (3)
C3—C41.393 (3)C15—H15A0.9700
C3—S11.758 (2)C15—H15B0.9700
C4—C51.375 (4)C16—S31.797 (2)
C4—H40.9300C16—H16A0.9700
C5—C61.368 (4)C16—H16B0.9700
C5—H50.9300C17—N41.327 (3)
C6—C71.368 (3)C17—C181.385 (3)
C6—H60.9300C17—S31.772 (2)
C7—N21.339 (3)C18—C191.369 (3)
C7—H70.9300C18—H180.9300
C8—N11.502 (3)C19—C201.372 (3)
C8—C91.508 (3)C19—H190.9300
C8—H8A0.9700C20—C211.369 (3)
C8—H8B0.9700C20—H200.9300
C9—S21.804 (2)C21—N41.339 (3)
C9—H9A0.9700C21—H210.9300
C9—H9B0.9700Cl1—O41.3980 (18)
C10—N31.323 (3)Cl1—O21.402 (2)
C10—C111.389 (3)Cl1—O31.411 (3)
C10—S21.766 (2)Cl1—O11.416 (2)
C11—C121.375 (4)N1—H1N0.85 (2)
C11—H110.9300
N1—C1—C2112.63 (16)C14—C13—H13120.7
N1—C1—H1A109.1N3—C14—C13123.9 (3)
C2—C1—H1A109.1N3—C14—H14118.0
N1—C1—H1B109.1C13—C14—H14118.0
C2—C1—H1B109.1N1—C15—C16112.76 (17)
H1A—C1—H1B107.8N1—C15—H15A109.0
C1—C2—S1116.00 (16)C16—C15—H15A109.0
C1—C2—H2A108.3N1—C15—H15B109.0
S1—C2—H2A108.3C16—C15—H15B109.0
C1—C2—H2B108.3H15A—C15—H15B107.8
S1—C2—H2B108.3C15—C16—S3114.41 (17)
H2A—C2—H2B107.4C15—C16—H16A108.7
N2—C3—C4122.2 (2)S3—C16—H16A108.7
N2—C3—S1120.20 (16)C15—C16—H16B108.7
C4—C3—S1117.62 (19)S3—C16—H16B108.7
C5—C4—C3118.6 (2)H16A—C16—H16B107.6
C5—C4—H4120.7N4—C17—C18123.8 (2)
C3—C4—H4120.7N4—C17—S3119.39 (16)
C6—C5—C4119.4 (2)C18—C17—S3116.78 (16)
C6—C5—H5120.3C19—C18—C17118.4 (2)
C4—C5—H5120.3C19—C18—H18120.8
C7—C6—C5118.4 (2)C17—C18—H18120.8
C7—C6—H6120.8C18—C19—C20119.1 (2)
C5—C6—H6120.8C18—C19—H19120.5
N2—C7—C6123.6 (2)C20—C19—H19120.5
N2—C7—H7118.2C21—C20—C19118.3 (2)
C6—C7—H7118.2C21—C20—H20120.8
N1—C8—C9112.11 (17)C19—C20—H20120.8
N1—C8—H8A109.2N4—C21—C20124.3 (2)
C9—C8—H8A109.2N4—C21—H21117.8
N1—C8—H8B109.2C20—C21—H21117.8
C9—C8—H8B109.2O4—Cl1—O2110.19 (16)
H8A—C8—H8B107.9O4—Cl1—O3109.95 (18)
C8—C9—S2110.37 (16)O2—Cl1—O3108.4 (2)
C8—C9—H9A109.6O4—Cl1—O1109.82 (13)
S2—C9—H9A109.6O2—Cl1—O1111.28 (18)
C8—C9—H9B109.6O3—Cl1—O1107.10 (17)
S2—C9—H9B109.6C8—N1—C15110.80 (16)
H9A—C9—H9B108.1C8—N1—C1110.78 (15)
N3—C10—C11123.5 (2)C15—N1—C1111.01 (16)
N3—C10—S2119.08 (17)C8—N1—H1N107.1 (16)
C11—C10—S2117.41 (19)C15—N1—H1N110.9 (16)
C12—C11—C10117.6 (3)C1—N1—H1N106.1 (15)
C12—C11—H11121.2C3—N2—C7117.69 (19)
C10—C11—H11121.2C10—N3—C14116.7 (2)
C13—C12—C11119.7 (3)C17—N4—C21116.07 (19)
C13—C12—H12120.2C3—S1—C2104.27 (10)
C11—C12—H12120.2C10—S2—C9101.18 (11)
C12—C13—C14118.6 (3)C17—S3—C16102.03 (11)
C12—C13—H13120.7
N1—C1—C2—S1−88.3 (2)C16—C15—N1—C1−84.1 (2)
N2—C3—C4—C50.4 (3)C2—C1—N1—C8−78.5 (2)
S1—C3—C4—C5179.12 (19)C2—C1—N1—C15157.92 (18)
C3—C4—C5—C60.3 (4)C4—C3—N2—C7−1.1 (3)
C4—C5—C6—C7−0.4 (4)S1—C3—N2—C7−179.76 (17)
C5—C6—C7—N2−0.3 (4)C6—C7—N2—C31.1 (3)
N1—C8—C9—S2167.02 (14)C11—C10—N3—C140.2 (3)
N3—C10—C11—C121.1 (3)S2—C10—N3—C14−179.71 (17)
S2—C10—C11—C12−179.07 (18)C13—C14—N3—C10−1.0 (4)
C10—C11—C12—C13−1.5 (4)C18—C17—N4—C210.1 (3)
C11—C12—C13—C140.7 (4)S3—C17—N4—C21−179.39 (17)
C12—C13—C14—N30.6 (4)C20—C21—N4—C170.4 (4)
N1—C15—C16—S3−79.1 (2)N2—C3—S1—C2−27.5 (2)
N4—C17—C18—C19−0.8 (3)C4—C3—S1—C2153.81 (18)
S3—C17—C18—C19178.63 (18)C1—C2—S1—C385.25 (17)
C17—C18—C19—C201.1 (3)N3—C10—S2—C9−13.36 (19)
C18—C19—C20—C21−0.6 (4)C11—C10—S2—C9166.76 (17)
C19—C20—C21—N4−0.2 (4)C8—C9—S2—C10−79.99 (17)
C9—C8—N1—C15−82.6 (2)N4—C17—S3—C169.5 (2)
C9—C8—N1—C1153.72 (17)C18—C17—S3—C16−170.05 (17)
C16—C15—N1—C8152.34 (18)C15—C16—S3—C17−79.31 (18)
D—H···AD—HH···AD···AD—H···A
N1—H(1N)···N20.85 (2)1.98 (2)2.812 (2)165 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯N20.85 (2)1.98 (2)2.812 (2)165 (3)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Lanthanide(III) Complexes of Tripodal N-Donor Ligands: Structural Models for the Species Involved in Solvent Extraction of Actinides(III).

Authors:  Raphaël Wietzke; Marinella Mazzanti; Jean-Marc Latour; Jacques Pécaut; Pierre-Yves Cordier; Charles Madic
Journal:  Inorg Chem       Date:  1998-12-28       Impact factor: 5.165

3.  Novel artificial receptors for alkylammonium ions with remarkable selectivity and affinity

Authors: 
Journal:  Chemistry       Date:  2000-09-15       Impact factor: 5.236

  3 in total

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