Literature DB >> 21579976

Diacridinium trans-diaqua-bis(pyrazine-2,3-dicarboxyl-ato)cobaltate(II) hexa-hydrate.

Hossein Aghabozorg, Jafar Attar Gharamaleki, Mahdieh Parvizi, Zohreh Derikvand.   

Abstract

The title compound, (C(13)H(10)N)(2)[Co(C(6)H(2)N(2)O(4))(2)(H(2)O)(2)]·6H(2)O, consists of mononuclear trans-[Co(pz-2,3-dc)(2)(H(2)O)(2)](2-) complex anions, (acrH)(+) cations and uncoordinated water mol-ecules (acr is acridine and pz-2,3-dcH(2) is pyrazine-2,3-dicarboxylic acid). The Co(II) atom, which lies on a crystallographic center of symmetry, has a slightly distorted octa-hedral coordination environment, with two N and two O atoms from the (pz-2,3-dc)(2-) ligands in the equatorial plane and with two water mol-ecules in axial positions. In the crystal, the components are held together by two distinct N-H⋯O and C-H⋯O hydrogen bonds with R(2) (2)(8) graph-sets. The coordinated and uncoordinated water mol-ecules are also involved in O-H⋯O hydrogen bonds, which lead to the formation of layers with R(3) (3)(12) graph-set motifs. Extensive π-π stacking inter-actions between parallel aromatic rings of the acridinium ions, with distances ranging from 3.533 (1) to 3.613 (1) Å, occur in the structure.

Entities:  

Year:  2009        PMID: 21579976      PMCID: PMC2980003          DOI: 10.1107/S1600536809053628

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of pyrazine-2,3-dicarboxylic acid (pz-2,3-dcH2), see: Takusagawa & Shimada (1973 ▶). For complexes of (pz-2,3-dcH2) and manganese, copper, zinc, iron and cadmium, see: Zou et al. (1999 ▶); Konar et al. (2004 ▶); Li et al. (2003 ▶); Xu et al. (2008 ▶); Ma et al. (2006 ▶). For complexes of (pz-2,3-dcH2) with main group metals such as calcium, magnesium and sodium, see: Ptasiewicz-Bak & Leciejewicz (1997a ▶,b ▶); Tombul et al. (2006 ▶). For related structures of CoII complexes with py-2,6-dcH2, see: Aghabozorg et al. (2007 ▶, 2009 ▶); Aghabozorg, Attar Gharamaleki et al. (2008 ▶). For a review article on proton-transfer agents and their metal complexes, see: Aghabozorg, Manteghi & Sheshmani (2008 ▶).

Experimental

Crystal data

(C13H10N)2[Co(C6H2N2O4)2(H2O)26H2O M = 895.69 Triclinic, a = 6.9434 (15) Å b = 9.682 (2) Å c = 15.660 (5) Å α = 94.60 (2)° β = 98.59 (2)° γ = 110.656 (16)° V = 963.9 (4) Å3 Z = 1 Mo Kα radiation μ = 0.53 mm−1 T = 120 K 0.35 × 0.10 × 0.10 mm

Data collection

Bruker SMART 1000 diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.828, T max = 0.949 10681 measured reflections 5096 independent reflections 3880 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.101 S = 1.00 5096 reflections 277 parameters H-atom parameters constrained Δρmax = 0.53 e Å−3 Δρmin = −0.51 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809053628/om2301sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809053628/om2301Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C13H10N)2[Co(C6H2N2O4)2(H2O)2]·6H2OZ = 1
Mr = 895.69F(000) = 465
Triclinic, P1Dx = 1.543 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.9434 (15) ÅCell parameters from 548 reflections
b = 9.682 (2) Åθ = 3–30°
c = 15.660 (5) ŵ = 0.53 mm1
α = 94.60 (2)°T = 120 K
β = 98.59 (2)°Needles, yellow
γ = 110.656 (16)°0.35 × 0.10 × 0.10 mm
V = 963.9 (4) Å3
Bruker SMART 1000 diffractometer5096 independent reflections
Radiation source: fine-focus sealed tube3880 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 29.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→9
Tmin = 0.828, Tmax = 0.949k = −13→13
10681 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: difference Fourier map
wR(F2) = 0.101H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0367P)2 + 0.699P] where P = (Fo2 + 2Fc2)/3
5096 reflections(Δ/σ)max < 0.001
277 parametersΔρmax = 0.53 e Å3
0 restraintsΔρmin = −0.51 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.50001.00000.00000.01687 (10)
O1W0.7405 (2)1.11233 (14)0.10425 (8)0.0206 (3)
H1WA0.83271.07260.12060.025*
H1WB0.79891.21210.11400.025*
O10.3091 (2)0.90307 (14)0.08669 (8)0.0183 (3)
O20.2750 (2)0.74313 (15)0.18449 (9)0.0234 (3)
O30.3583 (2)0.45588 (14)0.18785 (9)0.0209 (3)
O40.6398 (2)0.63005 (15)0.27515 (8)0.0228 (3)
N10.5784 (2)0.81013 (16)0.01910 (10)0.0164 (3)
C20.5084 (3)0.74911 (19)0.08802 (11)0.0153 (3)
C30.5842 (3)0.64696 (19)0.12446 (11)0.0155 (3)
N40.7276 (2)0.60676 (17)0.09142 (10)0.0184 (3)
C50.7905 (3)0.6652 (2)0.02152 (12)0.0190 (4)
H50.88890.6364−0.00400.023*
C60.7162 (3)0.7669 (2)−0.01489 (12)0.0184 (4)
H60.76410.8063−0.06480.022*
C70.3499 (3)0.8006 (2)0.12333 (11)0.0164 (4)
C80.5162 (3)0.5715 (2)0.20244 (12)0.0176 (4)
N90.6756 (2)0.47469 (17)0.40425 (10)0.0178 (3)
H90.64390.52600.36060.021*
C100.6512 (3)0.3295 (2)0.38850 (12)0.0180 (4)
C110.5757 (3)0.2510 (2)0.30266 (12)0.0219 (4)
H110.54270.29970.25550.026*
C120.5512 (3)0.1052 (2)0.28880 (13)0.0254 (4)
H120.49930.05230.23130.031*
C130.6007 (3)0.0294 (2)0.35744 (14)0.0270 (4)
H130.5827−0.07260.34560.032*
C140.6742 (3)0.1031 (2)0.44064 (14)0.0244 (4)
H140.70780.05210.48650.029*
C150.7007 (3)0.2556 (2)0.45909 (12)0.0196 (4)
C160.7708 (3)0.3361 (2)0.54300 (12)0.0216 (4)
H160.80460.28860.59070.026*
C170.7918 (3)0.4849 (2)0.55801 (12)0.0209 (4)
C180.8584 (3)0.5710 (3)0.64269 (13)0.0262 (4)
H180.89000.52630.69210.031*
C190.8771 (3)0.7159 (3)0.65353 (13)0.0289 (5)
H190.92110.77170.71030.035*
C200.8314 (3)0.7843 (2)0.58062 (14)0.0265 (4)
H200.84680.88620.58930.032*
C210.7655 (3)0.7068 (2)0.49774 (13)0.0222 (4)
H210.73510.75410.44940.027*
C220.7435 (3)0.5551 (2)0.48544 (12)0.0182 (4)
O2W0.0497 (2)0.83209 (16)0.29844 (9)0.0253 (3)
H2WA0.11360.79400.26190.030*
H2WB−0.08140.77060.29060.030*
O3W0.9656 (2)0.99532 (15)0.83648 (9)0.0249 (3)
H3WA0.89471.02890.86930.030*
H3WB0.97171.03360.79110.030*
O4W−0.0631 (2)0.40692 (16)0.12903 (11)0.0354 (4)
H4WA0.08020.45050.14980.042*
H4WB−0.13290.47620.12880.042*
U11U22U33U12U13U23
Co10.01858 (19)0.01624 (18)0.01689 (18)0.00754 (14)0.00289 (14)0.00433 (13)
O1W0.0203 (7)0.0165 (6)0.0235 (7)0.0078 (5)−0.0020 (5)0.0013 (5)
O10.0197 (7)0.0186 (6)0.0206 (7)0.0107 (5)0.0053 (5)0.0055 (5)
O20.0269 (7)0.0250 (7)0.0257 (7)0.0136 (6)0.0131 (6)0.0110 (6)
O30.0201 (7)0.0187 (7)0.0229 (7)0.0056 (5)0.0034 (5)0.0059 (5)
O40.0231 (7)0.0261 (7)0.0162 (6)0.0059 (6)0.0014 (5)0.0056 (5)
N10.0192 (8)0.0143 (7)0.0147 (7)0.0058 (6)0.0022 (6)0.0014 (6)
C20.0153 (8)0.0130 (8)0.0158 (8)0.0048 (7)0.0003 (7)−0.0004 (6)
C30.0170 (8)0.0138 (8)0.0145 (8)0.0051 (7)0.0009 (7)0.0010 (6)
N40.0200 (8)0.0174 (8)0.0190 (8)0.0083 (6)0.0035 (6)0.0034 (6)
C50.0209 (9)0.0189 (9)0.0187 (9)0.0088 (8)0.0051 (7)0.0008 (7)
C60.0210 (9)0.0187 (9)0.0170 (9)0.0083 (7)0.0051 (7)0.0040 (7)
C70.0161 (9)0.0155 (8)0.0167 (8)0.0053 (7)0.0018 (7)0.0019 (7)
C80.0196 (9)0.0191 (9)0.0184 (9)0.0112 (7)0.0048 (7)0.0059 (7)
N90.0164 (7)0.0229 (8)0.0145 (7)0.0076 (6)0.0024 (6)0.0049 (6)
C100.0140 (8)0.0232 (9)0.0172 (9)0.0066 (7)0.0035 (7)0.0055 (7)
C110.0197 (9)0.0261 (10)0.0186 (9)0.0075 (8)0.0021 (7)0.0038 (8)
C120.0225 (10)0.0259 (10)0.0235 (10)0.0049 (8)0.0031 (8)0.0005 (8)
C130.0239 (10)0.0197 (10)0.0358 (12)0.0060 (8)0.0055 (9)0.0045 (8)
C140.0207 (10)0.0260 (10)0.0292 (10)0.0095 (8)0.0057 (8)0.0125 (8)
C150.0140 (8)0.0267 (10)0.0198 (9)0.0083 (8)0.0045 (7)0.0076 (8)
C160.0160 (9)0.0334 (11)0.0187 (9)0.0107 (8)0.0054 (7)0.0113 (8)
C170.0152 (9)0.0336 (11)0.0155 (9)0.0103 (8)0.0036 (7)0.0052 (8)
C180.0193 (10)0.0457 (13)0.0158 (9)0.0152 (9)0.0028 (7)0.0025 (9)
C190.0205 (10)0.0442 (13)0.0200 (10)0.0124 (9)0.0025 (8)−0.0059 (9)
C200.0189 (10)0.0321 (11)0.0286 (11)0.0111 (9)0.0052 (8)−0.0031 (9)
C210.0187 (9)0.0275 (10)0.0222 (9)0.0108 (8)0.0044 (7)0.0032 (8)
C220.0125 (8)0.0265 (10)0.0157 (8)0.0072 (7)0.0039 (7)0.0025 (7)
O2W0.0227 (7)0.0293 (8)0.0244 (7)0.0093 (6)0.0071 (6)0.0042 (6)
O3W0.0291 (8)0.0299 (8)0.0247 (7)0.0196 (6)0.0079 (6)0.0088 (6)
O4W0.0200 (7)0.0181 (7)0.0642 (11)0.0077 (6)−0.0030 (7)0.0021 (7)
Co1—O1W2.0631 (14)C11—C121.356 (3)
Co1—O1Wi2.0631 (14)C11—H110.9500
Co1—O1i2.0846 (14)C12—C131.416 (3)
Co1—O12.0846 (14)C12—H120.9500
Co1—N12.1237 (15)C13—C141.365 (3)
Co1—N1i2.1237 (15)C13—H130.9500
O1W—H1WA0.8741C14—C151.422 (3)
O1W—H1WB0.8956C14—H140.9500
O1—C71.279 (2)C15—C161.396 (3)
O2—C71.236 (2)C16—C171.393 (3)
O3—C81.235 (2)C16—H160.9500
O4—C81.271 (2)C17—C181.426 (3)
N1—C61.332 (2)C17—C221.427 (3)
N1—C21.344 (2)C18—C191.357 (3)
C2—C31.396 (2)C18—H180.9500
C2—C71.513 (2)C19—C201.416 (3)
C3—N41.344 (2)C19—H190.9500
C3—C81.523 (2)C20—C211.372 (3)
N4—C51.333 (2)C20—H200.9500
C5—C61.386 (3)C21—C221.416 (3)
C5—H50.9500C21—H210.9500
C6—H60.9500O2W—H2WA0.9045
N9—C101.352 (2)O2W—H2WB0.8778
N9—C221.359 (2)O3W—H3WA0.8802
N9—H90.9214O3W—H3WB0.8268
C10—C111.416 (3)O4W—H4WA0.9266
C10—C151.428 (3)O4W—H4WB0.9560
O1W—Co1—O1Wi180.00 (8)C22—N9—H9114.8
O1W—Co1—O1i90.43 (6)N9—C10—C11120.24 (16)
O1Wi—Co1—O1i89.57 (6)N9—C10—C15119.61 (17)
O1W—Co1—O189.57 (6)C11—C10—C15120.15 (18)
O1Wi—Co1—O190.43 (6)C12—C11—C10119.03 (18)
O1i—Co1—O1180.0C12—C11—H11120.5
O1W—Co1—N186.35 (6)C10—C11—H11120.5
O1Wi—Co1—N193.65 (6)C11—C12—C13122.01 (19)
O1i—Co1—N1101.76 (6)C11—C12—H12119.0
O1—Co1—N178.24 (6)C13—C12—H12119.0
O1W—Co1—N1i93.65 (6)C14—C13—C12119.96 (19)
O1Wi—Co1—N1i86.35 (6)C14—C13—H13120.0
O1i—Co1—N1i78.24 (6)C12—C13—H13120.0
O1—Co1—N1i101.76 (6)C13—C14—C15120.42 (18)
N1—Co1—N1i180.000 (1)C13—C14—H14119.8
Co1—O1W—H1WA118.4C15—C14—H14119.8
Co1—O1W—H1WB121.9C16—C15—C14123.17 (18)
H1WA—O1W—H1WB111.1C16—C15—C10118.39 (18)
C7—O1—Co1116.07 (11)C14—C15—C10118.43 (18)
C6—N1—C2118.22 (15)C17—C16—C15121.10 (17)
C6—N1—Co1128.58 (12)C17—C16—H16119.5
C2—N1—Co1111.60 (12)C15—C16—H16119.5
N1—C2—C3120.57 (16)C16—C17—C18123.23 (18)
N1—C2—C7116.06 (15)C16—C17—C22118.67 (17)
C3—C2—C7123.36 (16)C18—C17—C22118.11 (19)
N4—C3—C2120.99 (16)C19—C18—C17120.76 (19)
N4—C3—C8114.13 (15)C19—C18—H18119.6
C2—C3—C8124.87 (16)C17—C18—H18119.6
C5—N4—C3117.53 (15)C18—C19—C20120.36 (19)
N4—C5—C6121.74 (17)C18—C19—H19119.8
N4—C5—H5119.1C20—C19—H19119.8
C6—C5—H5119.1C21—C20—C19121.5 (2)
N1—C6—C5120.89 (17)C21—C20—H20119.3
N1—C6—H6119.6C19—C20—H20119.3
C5—C6—H6119.6C20—C21—C22118.87 (19)
O2—C7—O1126.20 (17)C20—C21—H21120.6
O2—C7—C2118.32 (16)C22—C21—H21120.6
O1—C7—C2115.47 (15)N9—C22—C21120.25 (17)
O3—C8—O4127.19 (17)N9—C22—C17119.30 (18)
O3—C8—C3117.46 (16)C21—C22—C17120.45 (17)
O4—C8—C3115.12 (16)H2WA—O2W—H2WB107.6
C10—N9—C22122.92 (16)H3WA—O3W—H3WB110.8
C10—N9—H9122.3H4WA—O4W—H4WB113.8
O1W—Co1—O1—C7−73.69 (13)C2—C3—C8—O386.2 (2)
O1Wi—Co1—O1—C7106.31 (13)N4—C3—C8—O481.2 (2)
N1—Co1—O1—C712.67 (12)C2—C3—C8—O4−99.0 (2)
N1i—Co1—O1—C7−167.33 (12)C22—N9—C10—C11178.69 (17)
O1W—Co1—N1—C6−88.80 (16)C22—N9—C10—C15−0.9 (3)
O1Wi—Co1—N1—C691.19 (16)N9—C10—C11—C12−179.51 (18)
O1i—Co1—N1—C60.87 (16)C15—C10—C11—C120.1 (3)
O1—Co1—N1—C6−179.13 (16)C10—C11—C12—C13−0.6 (3)
O1W—Co1—N1—C276.28 (12)C11—C12—C13—C140.4 (3)
O1Wi—Co1—N1—C2−103.72 (12)C12—C13—C14—C150.3 (3)
O1i—Co1—N1—C2165.96 (12)C13—C14—C15—C16178.53 (19)
O1—Co1—N1—C2−14.04 (12)C13—C14—C15—C10−0.7 (3)
C6—N1—C2—C32.1 (3)N9—C10—C15—C160.9 (3)
Co1—N1—C2—C3−164.70 (13)C11—C10—C15—C16−178.74 (17)
C6—N1—C2—C7−179.20 (15)N9—C10—C15—C14−179.83 (17)
Co1—N1—C2—C714.00 (19)C11—C10—C15—C140.6 (3)
N1—C2—C3—N4−0.3 (3)C14—C15—C16—C17−179.19 (18)
C7—C2—C3—N4−178.91 (16)C10—C15—C16—C170.1 (3)
N1—C2—C3—C8179.89 (16)C15—C16—C17—C18178.62 (18)
C7—C2—C3—C81.3 (3)C15—C16—C17—C22−1.0 (3)
C2—C3—N4—C5−1.6 (3)C16—C17—C18—C19179.72 (19)
C8—C3—N4—C5178.23 (16)C22—C17—C18—C19−0.7 (3)
C3—N4—C5—C61.7 (3)C17—C18—C19—C20−0.3 (3)
C2—N1—C6—C5−2.0 (3)C18—C19—C20—C210.7 (3)
Co1—N1—C6—C5162.24 (14)C19—C20—C21—C22−0.1 (3)
N4—C5—C6—N10.1 (3)C10—N9—C22—C21−179.90 (17)
Co1—O1—C7—O2169.89 (15)C10—N9—C22—C170.0 (3)
Co1—O1—C7—C2−8.93 (19)C20—C21—C22—N9179.06 (17)
N1—C2—C7—O2177.20 (16)C20—C21—C22—C17−0.8 (3)
C3—C2—C7—O2−4.1 (3)C16—C17—C22—N91.0 (3)
N1—C2—C7—O1−3.9 (2)C18—C17—C22—N9−178.67 (16)
C3—C2—C7—O1174.79 (16)C16—C17—C22—C21−179.16 (17)
N4—C3—C8—O3−93.7 (2)C18—C17—C22—C211.2 (3)
D—H···AD—HH···AD···AD—H···A
O1W—H1WA···O3Wii0.871.812.684 (2)174
O1W—H1WB···O4Wiii0.901.772.658 (2)174
O2W—H2WA···O20.901.922.813 (2)172
O2W—H2WB···O4iv0.881.902.776 (2)177
O3W—H3WA···O1v0.881.952.806 (2)165
O3W—H3WB···O2Wv0.832.012.809 (2)162
O4W—H4WA···O30.931.912.789 (2)156
O4W—H4WB···N4iv0.961.922.848 (2)163
N9—H9···O40.921.742.648 (2)167
C11—H11···O30.952.503.365 (3)151
C12—H12···O1vi0.952.493.431 (3)171
C16—H16···O2Wvii0.952.463.395 (3)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WA⋯O3Wi0.871.812.684 (2)174
O1W—H1WB⋯O4Wii0.901.772.658 (2)174
O2W—H2WA⋯O20.901.922.813 (2)172
O2W—H2WB⋯O4iii0.881.902.776 (2)177
O3W—H3WA⋯O1iv0.881.952.806 (2)165
O3W—H3WB⋯O2Wiv0.832.012.809 (2)162
O4W—H4WA⋯O30.931.912.789 (2)156
O4W—H4WB⋯N4iii0.961.922.848 (2)163
N9—H9⋯O40.921.742.648 (2)167
C11—H11⋯O30.952.503.365 (3)151
C12—H12⋯O1v0.952.493.431 (3)171
C16—H16⋯O2Wvi0.952.463.395 (3)169

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Hydroxonium creatininium bis-(pyridine-2,6-dicarboxyl-ato-κO,N,O)cobaltate(II) trihydrate.

Authors:  Hossein Aghabozorg; Zohreh Derikvand; Jafar Attar Gharamaleki; Mohammad Yousefi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-27

3.  catena-Poly[[[diaqua-iron(II)]-μ-pyrazine-2,3-dicarboxyl-ato] dihydrate].

Authors:  Haiyun Xu; Huailing Ma; Maotian Xu; Wenxian Zhao; Baoguo Guo
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-06
  3 in total
  1 in total

1.  Fluorescence enhancement of quinolines by protonation.

Authors:  Essi Tervola; Khai-Nghi Truong; Jas S Ward; Arri Priimagi; Kari Rissanen
Journal:  RSC Adv       Date:  2020-08-12       Impact factor: 4.036

  1 in total

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