Literature DB >> 21579965

Aqua-(6,6'-oxydipicolinato-κO,N,N',O')copper(II).

Jingya Sun1, Xiangdi Tong.   

Abstract

In the title complex, [Cu(C(12)H(6)N(2)O(5))(H(2)O)], the Cu(II) ion is in a slightly distorted square-pyramidal coordination environment with two N and two O atoms from a 6,6'-oxydipicolinate ligand occupying the basal plane and a water ligand in the apical site. The dihedral angle between the two pyridine rings is 5.51 (6)°. In the crystal structure, inter-molecular O-H⋯O hydrogen bonds link mol-ecules into a two-dimensional network. In addition, weak inter-molecular C-H⋯O and C=O(lone pair)⋯π(ring) inter-actions, with O⋯ring-centroid distances of 3.697 (4) and 3.094 (4) Å, provide additional stabilization.

Entities:  

Year:  2009        PMID: 21579965      PMCID: PMC2980167          DOI: 10.1107/S160053680905346X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For inter­molecular inter­actions, see: Choudhury et al. (2008 ▶). For the applications of picolinic acid compounds, see: Mann et al. (1992 ▶).

Experimental

Crystal data

[Cu(C12H6N2O5)(H2O)] M = 339.74 Monoclinic, a = 7.2487 (16) Å b = 21.055 (4) Å c = 8.2269 (17) Å β = 110.201 (9)° V = 1178.4 (4) Å3 Z = 4 Mo Kα radiation μ = 1.89 mm−1 T = 296 K 0.40 × 0.35 × 0.30 mm

Data collection

Siemens SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.519, T max = 0.602 6790 measured reflections 2074 independent reflections 1806 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.110 S = 1.18 2074 reflections 190 parameters H-atom parameters constrained Δρmax = 0.48 e Å−3 Δρmin = −0.37 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶) and SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680905346X/lh2964sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680905346X/lh2964Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C12H6N2O5)(H2O)]F(000) = 684
Mr = 339.74Dx = 1.915 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2501 reflections
a = 7.2487 (16) Åθ = 2.8–27.5°
b = 21.055 (4) ŵ = 1.89 mm1
c = 8.2269 (17) ÅT = 296 K
β = 110.201 (9)°Block, blue
V = 1178.4 (4) Å30.40 × 0.35 × 0.30 mm
Z = 4
Siemens SMART CCD diffractometer2074 independent reflections
Radiation source: fine-focus sealed tube1806 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 25.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→8
Tmin = 0.519, Tmax = 0.602k = −24→24
6790 measured reflectionsl = −9→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H-atom parameters constrained
S = 1.18w = 1/[σ2(Fo2) + (0.0671P)2 + 0.1209P] where P = (Fo2 + 2Fc2)/3
2074 reflections(Δ/σ)max < 0.001
190 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.37 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.33165 (5)0.109980 (17)0.96148 (4)0.02725 (18)
O30.2907 (3)0.05841 (10)1.1417 (3)0.0327 (5)
N20.4163 (4)0.14875 (12)0.7848 (3)0.0265 (6)
O10.4318 (3)0.18774 (11)1.0899 (3)0.0336 (5)
O50.3272 (4)0.06644 (11)0.5777 (3)0.0368 (6)
N10.2837 (4)0.03042 (12)0.8315 (3)0.0254 (6)
O40.2158 (4)−0.04040 (11)1.1935 (3)0.0409 (6)
O20.5275 (4)0.28511 (11)1.0481 (3)0.0410 (6)
C120.2463 (4)0.00062 (15)1.1003 (4)0.0268 (7)
C10.4833 (5)0.23022 (15)1.0031 (4)0.0297 (7)
O60.0171 (3)0.14739 (11)0.8390 (3)0.0382 (6)
H6A−0.01200.16230.73730.046*
H6B−0.05210.11440.80100.046*
C20.4850 (5)0.20891 (14)0.8261 (4)0.0284 (7)
C50.4587 (5)0.15934 (17)0.5117 (4)0.0342 (8)
H50.44730.14190.40480.041*
C110.2346 (4)−0.01770 (15)0.9187 (4)0.0258 (7)
C100.1814 (5)−0.07640 (16)0.8462 (4)0.0348 (8)
H100.1481−0.10890.90750.042*
C60.4036 (5)0.12555 (15)0.6311 (4)0.0298 (7)
C80.2272 (5)−0.03744 (16)0.5894 (4)0.0358 (8)
H80.2241−0.04300.47630.043*
C70.2808 (5)0.02011 (15)0.6721 (4)0.0280 (7)
C90.1787 (5)−0.08608 (16)0.6763 (4)0.0374 (8)
H90.1441−0.12550.62350.045*
C30.5440 (5)0.24521 (16)0.7162 (4)0.0366 (8)
H30.59190.28610.74700.044*
C40.5311 (5)0.21967 (17)0.5561 (5)0.0407 (9)
H40.57150.24350.47930.049*
U11U22U33U12U13U23
Cu10.0409 (3)0.0226 (3)0.0216 (3)−0.00293 (15)0.01511 (19)−0.00212 (14)
O30.0481 (14)0.0300 (13)0.0229 (11)−0.0044 (10)0.0161 (10)−0.0017 (9)
N20.0309 (14)0.0253 (14)0.0242 (13)0.0005 (11)0.0105 (10)0.0002 (11)
O10.0470 (14)0.0288 (12)0.0267 (11)−0.0051 (10)0.0150 (10)−0.0053 (9)
O50.0589 (16)0.0326 (13)0.0237 (11)−0.0090 (11)0.0203 (11)−0.0052 (10)
N10.0327 (14)0.0225 (13)0.0220 (12)−0.0009 (11)0.0108 (10)−0.0010 (10)
O40.0594 (16)0.0381 (14)0.0303 (12)−0.0093 (12)0.0219 (11)0.0034 (11)
O20.0495 (15)0.0263 (13)0.0471 (15)−0.0071 (10)0.0166 (12)−0.0104 (11)
C120.0283 (16)0.0302 (18)0.0215 (15)0.0000 (13)0.0082 (13)0.0033 (13)
C10.0275 (16)0.0285 (19)0.0323 (16)0.0031 (13)0.0094 (13)−0.0018 (14)
O60.0378 (13)0.0339 (13)0.0400 (13)0.0015 (10)0.0098 (11)0.0019 (11)
C20.0286 (16)0.0233 (16)0.0310 (16)−0.0001 (13)0.0075 (13)0.0014 (13)
C50.0361 (18)0.040 (2)0.0298 (17)0.0017 (14)0.0164 (14)0.0037 (14)
C110.0289 (16)0.0250 (16)0.0234 (15)0.0026 (12)0.0087 (12)0.0014 (12)
C100.048 (2)0.0268 (18)0.0324 (18)−0.0054 (14)0.0167 (15)−0.0001 (14)
C60.0361 (18)0.0305 (18)0.0246 (16)0.0025 (14)0.0130 (13)0.0022 (13)
C80.046 (2)0.036 (2)0.0277 (16)−0.0008 (15)0.0161 (15)−0.0095 (15)
C70.0348 (17)0.0279 (17)0.0227 (15)0.0012 (13)0.0117 (13)−0.0001 (13)
C90.050 (2)0.0285 (18)0.0346 (18)−0.0074 (16)0.0160 (16)−0.0114 (15)
C30.0374 (19)0.0310 (18)0.042 (2)−0.0050 (15)0.0142 (15)0.0034 (16)
C40.043 (2)0.042 (2)0.042 (2)−0.0028 (16)0.0217 (16)0.0123 (17)
Cu1—O31.942 (2)O6—H6A0.8500
Cu1—N21.942 (3)O6—H6B0.8501
Cu1—O11.948 (2)C2—C31.361 (5)
Cu1—N11.953 (2)C5—C41.375 (5)
Cu1—O62.290 (2)C5—C61.379 (4)
O3—C121.275 (4)C5—H50.9300
N2—C61.328 (4)C11—C101.368 (5)
N2—C21.361 (4)C10—C91.406 (5)
O1—C11.278 (4)C10—H100.9300
O5—C71.359 (4)C8—C91.363 (5)
O5—C61.371 (4)C8—C71.378 (5)
N1—C71.323 (4)C8—H80.9300
N1—C111.358 (4)C9—H90.9300
O4—C121.225 (4)C3—C41.395 (5)
O2—C11.222 (4)C3—H30.9300
C12—C111.517 (4)C4—H40.9300
C1—C21.528 (4)
O3—Cu1—N2167.91 (10)N2—C2—C1112.9 (3)
O3—Cu1—O1100.51 (9)C3—C2—C1125.2 (3)
N2—Cu1—O184.13 (10)C4—C5—C6117.7 (3)
O3—Cu1—N183.87 (9)C4—C5—H5121.1
N2—Cu1—N189.62 (10)C6—C5—H5121.1
O1—Cu1—N1168.68 (10)N1—C11—C10122.0 (3)
O3—Cu1—O697.86 (10)N1—C11—C12113.2 (3)
N2—Cu1—O692.86 (10)C10—C11—C12124.8 (3)
O1—Cu1—O694.45 (9)C11—C10—C9118.0 (3)
N1—Cu1—O695.29 (10)C11—C10—H10121.0
C12—O3—Cu1114.87 (19)C9—C10—H10121.0
C6—N2—C2118.7 (3)N2—C6—O5121.8 (3)
C6—N2—Cu1128.4 (2)N2—C6—C5123.1 (3)
C2—N2—Cu1112.8 (2)O5—C6—C5115.1 (3)
C1—O1—Cu1114.29 (19)C9—C8—C7118.8 (3)
C7—O5—C6128.3 (2)C9—C8—H8120.6
C7—N1—C11118.9 (3)C7—C8—H8120.6
C7—N1—Cu1128.5 (2)N1—C7—O5121.8 (3)
C11—N1—Cu1112.4 (2)N1—C7—C8122.6 (3)
O4—C12—O3126.1 (3)O5—C7—C8115.6 (3)
O4—C12—C11118.5 (3)C8—C9—C10119.7 (3)
O3—C12—C11115.4 (3)C8—C9—H9120.2
O2—C1—O1126.1 (3)C10—C9—H9120.2
O2—C1—C2118.6 (3)C2—C3—C4118.5 (3)
O1—C1—C2115.3 (3)C2—C3—H3120.8
Cu1—O6—H6A115.6C4—C3—H3120.8
Cu1—O6—H6B104.6C5—C4—C3120.1 (3)
H6A—O6—H6B91.5C5—C4—H4119.9
N2—C2—C3121.9 (3)C3—C4—H4119.9
D—H···AD—HH···AD···AD—H···A
C8—H8···O4i0.932.313.229 (4)171
C9—H9···O2ii0.932.423.331 (4)165
C4—H4···O6iii0.932.543.303 (4)140
O6—H6B···O4iv0.851.972.772 (3)157
O6—H6A···O2v0.852.012.807 (3)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8⋯O4i0.932.313.229 (4)171
C9—H9⋯O2ii0.932.423.331 (4)165
C4—H4⋯O6iii0.932.543.303 (4)140
O6—H6B⋯O4iv0.851.972.772 (3)157
O6—H6A⋯O2v0.852.012.807 (3)156

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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