| Literature DB >> 21579965 |
Abstract
In the title complex, [Cu(C(12)H(6)N(2)O(5))(H(2)O)], the Cu(II) ion is in a slightly distorted square-pyramidal coordination environment with two N and two O atoms from a 6,6'-oxydipicolinate ligand occupying the basal plane and a water ligand in the apical site. The dihedral angle between the two pyridine rings is 5.51 (6)°. In the crystal structure, inter-molecular O-H⋯O hydrogen bonds link mol-ecules into a two-dimensional network. In addition, weak inter-molecular C-H⋯O and C=O(lone pair)⋯π(ring) inter-actions, with O⋯ring-centroid distances of 3.697 (4) and 3.094 (4) Å, provide additional stabilization.Entities:
Year: 2009 PMID: 21579965 PMCID: PMC2980167 DOI: 10.1107/S160053680905346X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu(C12H6N2O5)(H2O)] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 2501 reflections |
| θ = 2.8–27.5° | |
| µ = 1.89 mm−1 | |
| β = 110.201 (9)° | Block, blue |
| 0.40 × 0.35 × 0.30 mm | |
| Siemens SMART CCD diffractometer | 2074 independent reflections |
| Radiation source: fine-focus sealed tube | 1806 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 6790 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2074 reflections | (Δ/σ)max < 0.001 |
| 190 parameters | Δρmax = 0.48 e Å−3 |
| 0 restraints | Δρmin = −0.37 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cu1 | 0.33165 (5) | 0.109980 (17) | 0.96148 (4) | 0.02725 (18) | |
| O3 | 0.2907 (3) | 0.05841 (10) | 1.1417 (3) | 0.0327 (5) | |
| N2 | 0.4163 (4) | 0.14875 (12) | 0.7848 (3) | 0.0265 (6) | |
| O1 | 0.4318 (3) | 0.18774 (11) | 1.0899 (3) | 0.0336 (5) | |
| O5 | 0.3272 (4) | 0.06644 (11) | 0.5777 (3) | 0.0368 (6) | |
| N1 | 0.2837 (4) | 0.03042 (12) | 0.8315 (3) | 0.0254 (6) | |
| O4 | 0.2158 (4) | −0.04040 (11) | 1.1935 (3) | 0.0409 (6) | |
| O2 | 0.5275 (4) | 0.28511 (11) | 1.0481 (3) | 0.0410 (6) | |
| C12 | 0.2463 (4) | 0.00062 (15) | 1.1003 (4) | 0.0268 (7) | |
| C1 | 0.4833 (5) | 0.23022 (15) | 1.0031 (4) | 0.0297 (7) | |
| O6 | 0.0171 (3) | 0.14739 (11) | 0.8390 (3) | 0.0382 (6) | |
| H6A | −0.0120 | 0.1623 | 0.7373 | 0.046* | |
| H6B | −0.0521 | 0.1144 | 0.8010 | 0.046* | |
| C2 | 0.4850 (5) | 0.20891 (14) | 0.8261 (4) | 0.0284 (7) | |
| C5 | 0.4587 (5) | 0.15934 (17) | 0.5117 (4) | 0.0342 (8) | |
| H5 | 0.4473 | 0.1419 | 0.4048 | 0.041* | |
| C11 | 0.2346 (4) | −0.01770 (15) | 0.9187 (4) | 0.0258 (7) | |
| C10 | 0.1814 (5) | −0.07640 (16) | 0.8462 (4) | 0.0348 (8) | |
| H10 | 0.1481 | −0.1089 | 0.9075 | 0.042* | |
| C6 | 0.4036 (5) | 0.12555 (15) | 0.6311 (4) | 0.0298 (7) | |
| C8 | 0.2272 (5) | −0.03744 (16) | 0.5894 (4) | 0.0358 (8) | |
| H8 | 0.2241 | −0.0430 | 0.4763 | 0.043* | |
| C7 | 0.2808 (5) | 0.02011 (15) | 0.6721 (4) | 0.0280 (7) | |
| C9 | 0.1787 (5) | −0.08608 (16) | 0.6763 (4) | 0.0374 (8) | |
| H9 | 0.1441 | −0.1255 | 0.6235 | 0.045* | |
| C3 | 0.5440 (5) | 0.24521 (16) | 0.7162 (4) | 0.0366 (8) | |
| H3 | 0.5919 | 0.2861 | 0.7470 | 0.044* | |
| C4 | 0.5311 (5) | 0.21967 (17) | 0.5561 (5) | 0.0407 (9) | |
| H4 | 0.5715 | 0.2435 | 0.4793 | 0.049* |
| Cu1 | 0.0409 (3) | 0.0226 (3) | 0.0216 (3) | −0.00293 (15) | 0.01511 (19) | −0.00212 (14) |
| O3 | 0.0481 (14) | 0.0300 (13) | 0.0229 (11) | −0.0044 (10) | 0.0161 (10) | −0.0017 (9) |
| N2 | 0.0309 (14) | 0.0253 (14) | 0.0242 (13) | 0.0005 (11) | 0.0105 (10) | 0.0002 (11) |
| O1 | 0.0470 (14) | 0.0288 (12) | 0.0267 (11) | −0.0051 (10) | 0.0150 (10) | −0.0053 (9) |
| O5 | 0.0589 (16) | 0.0326 (13) | 0.0237 (11) | −0.0090 (11) | 0.0203 (11) | −0.0052 (10) |
| N1 | 0.0327 (14) | 0.0225 (13) | 0.0220 (12) | −0.0009 (11) | 0.0108 (10) | −0.0010 (10) |
| O4 | 0.0594 (16) | 0.0381 (14) | 0.0303 (12) | −0.0093 (12) | 0.0219 (11) | 0.0034 (11) |
| O2 | 0.0495 (15) | 0.0263 (13) | 0.0471 (15) | −0.0071 (10) | 0.0166 (12) | −0.0104 (11) |
| C12 | 0.0283 (16) | 0.0302 (18) | 0.0215 (15) | 0.0000 (13) | 0.0082 (13) | 0.0033 (13) |
| C1 | 0.0275 (16) | 0.0285 (19) | 0.0323 (16) | 0.0031 (13) | 0.0094 (13) | −0.0018 (14) |
| O6 | 0.0378 (13) | 0.0339 (13) | 0.0400 (13) | 0.0015 (10) | 0.0098 (11) | 0.0019 (11) |
| C2 | 0.0286 (16) | 0.0233 (16) | 0.0310 (16) | −0.0001 (13) | 0.0075 (13) | 0.0014 (13) |
| C5 | 0.0361 (18) | 0.040 (2) | 0.0298 (17) | 0.0017 (14) | 0.0164 (14) | 0.0037 (14) |
| C11 | 0.0289 (16) | 0.0250 (16) | 0.0234 (15) | 0.0026 (12) | 0.0087 (12) | 0.0014 (12) |
| C10 | 0.048 (2) | 0.0268 (18) | 0.0324 (18) | −0.0054 (14) | 0.0167 (15) | −0.0001 (14) |
| C6 | 0.0361 (18) | 0.0305 (18) | 0.0246 (16) | 0.0025 (14) | 0.0130 (13) | 0.0022 (13) |
| C8 | 0.046 (2) | 0.036 (2) | 0.0277 (16) | −0.0008 (15) | 0.0161 (15) | −0.0095 (15) |
| C7 | 0.0348 (17) | 0.0279 (17) | 0.0227 (15) | 0.0012 (13) | 0.0117 (13) | −0.0001 (13) |
| C9 | 0.050 (2) | 0.0285 (18) | 0.0346 (18) | −0.0074 (16) | 0.0160 (16) | −0.0114 (15) |
| C3 | 0.0374 (19) | 0.0310 (18) | 0.042 (2) | −0.0050 (15) | 0.0142 (15) | 0.0034 (16) |
| C4 | 0.043 (2) | 0.042 (2) | 0.042 (2) | −0.0028 (16) | 0.0217 (16) | 0.0123 (17) |
| Cu1—O3 | 1.942 (2) | O6—H6A | 0.8500 |
| Cu1—N2 | 1.942 (3) | O6—H6B | 0.8501 |
| Cu1—O1 | 1.948 (2) | C2—C3 | 1.361 (5) |
| Cu1—N1 | 1.953 (2) | C5—C4 | 1.375 (5) |
| Cu1—O6 | 2.290 (2) | C5—C6 | 1.379 (4) |
| O3—C12 | 1.275 (4) | C5—H5 | 0.9300 |
| N2—C6 | 1.328 (4) | C11—C10 | 1.368 (5) |
| N2—C2 | 1.361 (4) | C10—C9 | 1.406 (5) |
| O1—C1 | 1.278 (4) | C10—H10 | 0.9300 |
| O5—C7 | 1.359 (4) | C8—C9 | 1.363 (5) |
| O5—C6 | 1.371 (4) | C8—C7 | 1.378 (5) |
| N1—C7 | 1.323 (4) | C8—H8 | 0.9300 |
| N1—C11 | 1.358 (4) | C9—H9 | 0.9300 |
| O4—C12 | 1.225 (4) | C3—C4 | 1.395 (5) |
| O2—C1 | 1.222 (4) | C3—H3 | 0.9300 |
| C12—C11 | 1.517 (4) | C4—H4 | 0.9300 |
| C1—C2 | 1.528 (4) | ||
| O3—Cu1—N2 | 167.91 (10) | N2—C2—C1 | 112.9 (3) |
| O3—Cu1—O1 | 100.51 (9) | C3—C2—C1 | 125.2 (3) |
| N2—Cu1—O1 | 84.13 (10) | C4—C5—C6 | 117.7 (3) |
| O3—Cu1—N1 | 83.87 (9) | C4—C5—H5 | 121.1 |
| N2—Cu1—N1 | 89.62 (10) | C6—C5—H5 | 121.1 |
| O1—Cu1—N1 | 168.68 (10) | N1—C11—C10 | 122.0 (3) |
| O3—Cu1—O6 | 97.86 (10) | N1—C11—C12 | 113.2 (3) |
| N2—Cu1—O6 | 92.86 (10) | C10—C11—C12 | 124.8 (3) |
| O1—Cu1—O6 | 94.45 (9) | C11—C10—C9 | 118.0 (3) |
| N1—Cu1—O6 | 95.29 (10) | C11—C10—H10 | 121.0 |
| C12—O3—Cu1 | 114.87 (19) | C9—C10—H10 | 121.0 |
| C6—N2—C2 | 118.7 (3) | N2—C6—O5 | 121.8 (3) |
| C6—N2—Cu1 | 128.4 (2) | N2—C6—C5 | 123.1 (3) |
| C2—N2—Cu1 | 112.8 (2) | O5—C6—C5 | 115.1 (3) |
| C1—O1—Cu1 | 114.29 (19) | C9—C8—C7 | 118.8 (3) |
| C7—O5—C6 | 128.3 (2) | C9—C8—H8 | 120.6 |
| C7—N1—C11 | 118.9 (3) | C7—C8—H8 | 120.6 |
| C7—N1—Cu1 | 128.5 (2) | N1—C7—O5 | 121.8 (3) |
| C11—N1—Cu1 | 112.4 (2) | N1—C7—C8 | 122.6 (3) |
| O4—C12—O3 | 126.1 (3) | O5—C7—C8 | 115.6 (3) |
| O4—C12—C11 | 118.5 (3) | C8—C9—C10 | 119.7 (3) |
| O3—C12—C11 | 115.4 (3) | C8—C9—H9 | 120.2 |
| O2—C1—O1 | 126.1 (3) | C10—C9—H9 | 120.2 |
| O2—C1—C2 | 118.6 (3) | C2—C3—C4 | 118.5 (3) |
| O1—C1—C2 | 115.3 (3) | C2—C3—H3 | 120.8 |
| Cu1—O6—H6A | 115.6 | C4—C3—H3 | 120.8 |
| Cu1—O6—H6B | 104.6 | C5—C4—C3 | 120.1 (3) |
| H6A—O6—H6B | 91.5 | C5—C4—H4 | 119.9 |
| N2—C2—C3 | 121.9 (3) | C3—C4—H4 | 119.9 |
| H··· | ||||
| C8—H8···O4i | 0.93 | 2.31 | 3.229 (4) | 171 |
| C9—H9···O2ii | 0.93 | 2.42 | 3.331 (4) | 165 |
| C4—H4···O6iii | 0.93 | 2.54 | 3.303 (4) | 140 |
| O6—H6B···O4iv | 0.85 | 1.97 | 2.772 (3) | 157 |
| O6—H6A···O2v | 0.85 | 2.01 | 2.807 (3) | 156 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C8—H8⋯O4i | 0.93 | 2.31 | 3.229 (4) | 171 |
| C9—H9⋯O2ii | 0.93 | 2.42 | 3.331 (4) | 165 |
| C4—H4⋯O6iii | 0.93 | 2.54 | 3.303 (4) | 140 |
| O6—H6 | 0.85 | 1.97 | 2.772 (3) | 157 |
| O6—H6 | 0.85 | 2.01 | 2.807 (3) | 156 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .