Literature DB >> 21579891

(E)-1-(2,4-Dinitro-phen-yl)-2-pentyl-idenehydrazine.

Patrícia D Neunfeldt, Auri R Duval, Wilson Cunico, Solange M S V Wardell, Edward R T Tiekink, James L Wardell.   

Abstract

The title compound, C(11)H(14)N(4)O(4), is essentially planar with an r.m.s. deviation for the 19 non-H atoms of 0.152 Å. The conformation about the C=N bond is E, and the mol-ecule has a U-shape as the butyl group folds over towards the aromatic system. An intra-molecular C-H⋯N inter-action occurs. The crystal packing is dominated by N-H⋯O hydrogen bonding and C-H⋯O contacts, leading to twisted zigzag supra-molecular chains along the c direction. The crystal packing brings two nitro O atoms into an unusually close proximity of 2.686 (4) Å. While the nature of this inter-action is not obvious, there are several precendents for such short nitro-nitro O⋯O contacts of less than 2.70 Å in the crystallographic literature.

Entities:  

Year:  2010        PMID: 21579891      PMCID: PMC2979683          DOI: 10.1107/S1600536810002102

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological uses of hydrazones, see: Rollas & Küçükgüzel (2007 ▶). For background to the synthesis, see: Furniss et al. (1999 ▶); Neuenfeldt et al. (2009 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C11H14N4O4 M = 266.26 Monoclinic, a = 31.162 (3) Å b = 4.4930 (4) Å c = 18.7329 (14) Å β = 106.159 (4)° V = 2519.2 (4) Å3 Z = 8 Mo Kα radiation μ = 0.11 mm−1 T = 120 K 0.32 × 0.03 × 0.02 mm

Data collection

-Nonius KappaCCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.628, T max = 1.000 8172 measured reflections 2174 independent reflections 1451 reflections with I > 2σ(I) R int = 0.115

Refinement

R[F 2 > 2σ(F 2)] = 0.078 wR(F 2) = 0.183 S = 1.10 2174 reflections 179 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.27 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810002102/fj2271sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810002102/fj2271Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H14N4O4F(000) = 1120
Mr = 266.26Dx = 1.404 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 14843 reflections
a = 31.162 (3) Åθ = 2.9–27.5°
b = 4.4930 (4) ŵ = 0.11 mm1
c = 18.7329 (14) ÅT = 120 K
β = 106.159 (4)°Needle, yellow
V = 2519.2 (4) Å30.32 × 0.03 × 0.02 mm
Z = 8
-Nonius KappaCCD area-detector diffractometer2174 independent reflections
Radiation source: Enraf Nonius FR591 rotating anode1451 reflections with I > 2σ(I)
10 cm confocal mirrorsRint = 0.115
Detector resolution: 9.091 pixels mm-1θmax = 25.0°, θmin = 3.0°
φ and ω scansh = −36→36
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −5→5
Tmin = 0.628, Tmax = 1.000l = −22→22
8172 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.078Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.183H atoms treated by a mixture of independent and constrained refinement
S = 1.10w = 1/[σ2(Fo2) + (0.0406P)2 + 14.6755P] where P = (Fo2 + 2Fc2)/3
2174 reflections(Δ/σ)max < 0.001
179 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.04985 (11)−0.5722 (7)0.23571 (16)0.0294 (8)
O20.11770 (10)−0.4264 (8)0.24360 (16)0.0360 (9)
O3−0.03340 (10)−0.1033 (7)0.37999 (16)0.0263 (8)
O4−0.00644 (9)0.2652 (7)0.45386 (15)0.0240 (7)
N10.07910 (11)0.3841 (8)0.49031 (18)0.0194 (8)
H1N0.0551 (14)0.401 (10)0.505 (2)0.023*
N20.11897 (11)0.5276 (8)0.52633 (18)0.0224 (9)
N30.08254 (13)−0.4163 (9)0.26201 (19)0.0267 (9)
N4−0.00244 (11)0.0661 (8)0.41033 (19)0.0213 (8)
C10.07833 (13)0.2003 (10)0.4333 (2)0.0197 (10)
C20.04022 (13)0.0353 (10)0.3940 (2)0.0185 (9)
C30.04158 (14)−0.1701 (9)0.3391 (2)0.0191 (9)
H30.0161−0.28680.31590.023*
C40.08074 (14)−0.2003 (10)0.3192 (2)0.0222 (10)
C50.11852 (14)−0.0324 (10)0.3534 (2)0.0242 (10)
H50.1450−0.05280.33810.029*
C60.11736 (14)0.1613 (10)0.4090 (2)0.0230 (10)
H60.14340.27330.43210.028*
C70.11826 (14)0.6629 (11)0.5855 (2)0.0248 (10)
H70.0922 (15)0.660 (11)0.604 (2)0.030*
C80.15800 (14)0.8254 (11)0.6307 (2)0.0281 (11)
H8A0.16930.72070.67880.034*
H8B0.14851.02660.64150.034*
C90.19629 (14)0.8581 (12)0.5957 (2)0.0292 (11)
H9A0.20410.65930.58020.035*
H9B0.18630.98300.55050.035*
C100.23763 (15)0.9966 (13)0.6476 (3)0.0382 (13)
H10A0.22931.18960.66550.046*
H10B0.24850.86540.69140.046*
C110.27528 (16)1.0479 (14)0.6126 (3)0.0481 (15)
H11A0.28260.86020.59210.072*
H11B0.30161.12160.65030.072*
H11C0.26601.19510.57270.072*
U11U22U33U12U13U23
O10.0374 (18)0.0244 (18)0.0233 (16)0.0013 (17)0.0035 (14)−0.0058 (15)
O20.0333 (18)0.050 (2)0.0308 (17)0.0130 (18)0.0186 (15)−0.0036 (17)
O30.0273 (16)0.0281 (19)0.0246 (15)−0.0065 (15)0.0090 (13)−0.0059 (15)
O40.0244 (16)0.0223 (18)0.0265 (15)0.0017 (13)0.0093 (13)−0.0074 (15)
N10.0163 (18)0.019 (2)0.0236 (18)0.0000 (16)0.0061 (15)−0.0035 (17)
N20.0181 (17)0.026 (2)0.0231 (19)−0.0029 (16)0.0052 (15)0.0018 (17)
N30.037 (2)0.023 (2)0.0218 (19)0.010 (2)0.0108 (18)0.0006 (17)
N40.0228 (19)0.020 (2)0.0219 (18)0.0005 (17)0.0078 (16)0.0023 (18)
C10.022 (2)0.017 (2)0.019 (2)0.0026 (19)0.0042 (18)0.0026 (19)
C20.019 (2)0.017 (2)0.019 (2)−0.0002 (18)0.0047 (18)0.0006 (19)
C30.024 (2)0.010 (2)0.021 (2)0.0042 (18)0.0025 (18)0.0015 (18)
C40.029 (2)0.018 (2)0.021 (2)0.005 (2)0.0091 (19)0.0028 (19)
C50.022 (2)0.025 (3)0.028 (2)0.005 (2)0.0105 (19)0.009 (2)
C60.019 (2)0.022 (3)0.028 (2)−0.0008 (19)0.0082 (19)0.006 (2)
C70.023 (2)0.027 (3)0.024 (2)−0.004 (2)0.0054 (19)−0.003 (2)
C80.030 (2)0.028 (3)0.027 (2)−0.008 (2)0.009 (2)−0.005 (2)
C90.027 (2)0.033 (3)0.027 (2)−0.006 (2)0.006 (2)0.001 (2)
C100.032 (3)0.043 (4)0.033 (3)−0.010 (2)−0.002 (2)0.004 (3)
C110.032 (3)0.056 (4)0.054 (3)−0.008 (3)0.009 (3)0.010 (3)
O1—N31.221 (5)C5—H50.9500
O2—N31.238 (4)C6—H60.9500
O3—N41.236 (4)C7—C81.483 (6)
O4—N41.240 (4)C7—H70.96 (4)
N1—C11.345 (5)C8—C91.521 (6)
N1—N21.396 (5)C8—H8A0.9900
N1—H1N0.87 (4)C8—H8B0.9900
N2—C71.270 (5)C9—C101.515 (6)
N3—C41.458 (5)C9—H9A0.9900
N4—C21.451 (5)C9—H9B0.9900
C1—C21.420 (6)C10—C111.513 (6)
C1—C61.423 (5)C10—H10A0.9900
C2—C31.391 (6)C10—H10B0.9900
C3—C41.378 (5)C11—H11A0.9800
C3—H30.9500C11—H11B0.9800
C4—C51.395 (6)C11—H11C0.9800
C5—C61.365 (6)
C1—N1—N2118.9 (3)N2—C7—C8121.3 (4)
C1—N1—H1N119 (3)N2—C7—H7122 (3)
N2—N1—H1N122 (3)C8—C7—H7117 (3)
C7—N2—N1114.4 (3)C7—C8—C9115.5 (4)
O1—N3—O2124.8 (4)C7—C8—H8A108.4
O1—N3—C4118.7 (3)C9—C8—H8A108.4
O2—N3—C4116.6 (4)C7—C8—H8B108.4
O3—N4—O4122.6 (3)C9—C8—H8B108.4
O3—N4—C2119.2 (3)H8A—C8—H8B107.5
O4—N4—C2118.2 (3)C10—C9—C8113.0 (4)
N1—C1—C2124.0 (4)C10—C9—H9A109.0
N1—C1—C6120.1 (4)C8—C9—H9A109.0
C2—C1—C6115.8 (4)C10—C9—H9B109.0
C3—C2—C1122.5 (4)C8—C9—H9B109.0
C3—C2—N4115.9 (4)H9A—C9—H9B107.8
C1—C2—N4121.6 (4)C11—C10—C9114.0 (4)
C4—C3—C2118.5 (4)C11—C10—H10A108.7
C4—C3—H3120.8C9—C10—H10A108.7
C2—C3—H3120.8C11—C10—H10B108.7
C3—C4—C5121.3 (4)C9—C10—H10B108.7
C3—C4—N3118.8 (4)H10A—C10—H10B107.6
C5—C4—N3119.8 (4)C10—C11—H11A109.5
C6—C5—C4119.8 (4)C10—C11—H11B109.5
C6—C5—H5120.1H11A—C11—H11B109.5
C4—C5—H5120.1C10—C11—H11C109.5
C5—C6—C1121.9 (4)H11A—C11—H11C109.5
C5—C6—H6119.0H11B—C11—H11C109.5
C1—C6—H6119.0
D—H···AD—HH···AD···AD—H···A
N1—H1n···O40.87 (4)1.99 (4)2.616 (5)128 (3)
N1—H1n···O4i0.87 (4)2.41 (4)3.166 (5)146 (4)
C3—H3···O1ii0.952.393.335 (5)176
C6—H6···N20.952.402.735 (5)100
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1n⋯O40.87 (4)1.99 (4)2.616 (5)128 (3)
N1—H1n⋯O4i0.87 (4)2.41 (4)3.166 (5)146 (4)
C3—H3⋯O1ii0.952.393.335 (5)176
C6—H6⋯N20.952.402.735 (5)100

Symmetry codes: (i) ; (ii) .

  4 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  4-(Pyrimidin-2-yl)-1-thia-4-aza-spiro-[4.5]decan-3-one.

Authors:  Patrícia D Neuenfeldt; Bruna B Drawanz; Wilson Cunico; Edward R T Tiekink; James L Wardell; Solange M S V Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-25

Review 4.  Biological activities of hydrazone derivatives.

Authors:  Sevim Rollas; S Güniz Küçükgüzel
Journal:  Molecules       Date:  2007-08-17       Impact factor: 4.411

  4 in total

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