Literature DB >> 21579866

7-[4-(4-Fluoro-phen-yl)-2-methyl-sulfanyl-1H-imidazol-5-yl]tetra-zolo[1,5-a]pyridine.

Roland Selig, Dieter Schollmeyer, Joachim Schlosser, Wolfgang Albrecht, Stefan Laufer.   

Abstract

The crystal structure of the title compound, C(15)H(11)FN(6)S, forms a three-dimensional network stabilized by π-π inter-actions between the imidazole core and the tetra-zole ring of the tetra-zolopyridine-unit; the centroid-centroid distance is 3.627 (1) Å. The crystal structure also displays bifurcated N-H⋯(N,N) hydrogen bonding and C-H⋯F inter-actions. The former involve the NH H atom of the imidazole core and the tetra-zolopyridine N atoms, while the latter involve a methyl H atom, of the methyl-sulfanyl group, and the 4-fluoro-phenyl F atom. In the mol-ecule, the imidazole ring makes dihedral angles of 40.45 (9) and 17.09 (8)°, respectively, with the 4-fluoro-phenyl ring and the tetra-zolopyridine ring mean plane.

Entities:  

Year:  2010        PMID: 21579866      PMCID: PMC2979910          DOI: 10.1107/S1600536810002680

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological relevance and the development of p38 MAP kinase inhibitors, see: see: Peifer et al. (2006 ▶). For the preparation of 2-fluoro-4-[4-(4-fluoro­phen­yl)-2-(methyl­thio)-1H-imidazol-5-yl]pyridine, see: Laufer & Liedtke (2006 ▶). For the preparation of tetra­zolopyridines, see: Capelli et al. (2008 ▶).

Experimental

Crystal data

C15H11FN6S M = 326.36 Monoclinic, a = 9.8342 (7) Å b = 18.1908 (6) Å c = 8.2374 (7) Å β = 100.292 (3)° V = 1449.89 (17) Å3 Z = 4 Cu Kα radiation μ = 2.17 mm−1 T = 193 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (CORINC; Dräger & Gattow, 1971 ▶) T min = 0.866, T max = 0.999 5760 measured reflections 2733 independent reflections 2403 reflections with I > 2σ(I) R int = 0.056 3 standard reflections every 60 min intensity decay: 3%

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.107 S = 1.06 2733 reflections 210 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.30 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: CORINC (Dräger & Gattow, 1971 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810002680/su2158sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810002680/su2158Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H11FN6SF(000) = 672
Mr = 326.36Dx = 1.495 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 9.8342 (7) Åθ = 65–70°
b = 18.1908 (6) ŵ = 2.17 mm1
c = 8.2374 (7) ÅT = 193 K
β = 100.292 (3)°Plate, colourless
V = 1449.89 (17) Å30.30 × 0.20 × 0.10 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer2403 reflections with I > 2σ(I)
Radiation source: rotating anodeRint = 0.056
graphiteθmax = 69.9°, θmin = 4.6°
ω/2θ scansh = −11→11
Absorption correction: ψ scan (CORINC; Dräger & Gattow, 1971)k = −22→22
Tmin = 0.866, Tmax = 0.999l = −10→0
5760 measured reflections3 standard reflections every 60 min
2733 independent reflections intensity decay: 3%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.107w = 1/[σ2(Fo2) + (0.051P)2 + 0.5315P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
2733 reflectionsΔρmax = 0.37 e Å3
210 parametersΔρmin = −0.30 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0014 (2)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R- factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S200.84423 (5)0.32567 (2)0.15709 (8)0.0423 (2)
F190.09192 (12)0.08344 (6)0.37488 (16)0.0442 (4)
N10.29691 (15)0.61704 (7)0.31439 (19)0.0284 (4)
N20.18289 (15)0.63452 (8)0.3762 (2)0.0315 (4)
N30.12953 (15)0.57831 (8)0.4381 (2)0.0304 (4)
N3A0.21213 (13)0.52053 (7)0.41594 (17)0.0232 (4)
N80.62050 (14)0.39105 (8)0.25381 (18)0.0265 (4)
N100.61319 (14)0.26910 (7)0.24463 (18)0.0271 (4)
C40.20076 (17)0.44913 (9)0.4666 (2)0.0267 (5)
C50.29443 (17)0.40040 (9)0.4318 (2)0.0264 (5)
C60.40054 (16)0.42075 (8)0.3415 (2)0.0221 (4)
C70.41195 (16)0.49369 (9)0.2991 (2)0.0231 (4)
C7A0.31553 (16)0.54434 (9)0.3388 (2)0.0230 (4)
C90.68541 (17)0.33087 (9)0.2239 (2)0.0275 (5)
C110.49088 (16)0.29071 (9)0.2895 (2)0.0239 (5)
C120.49810 (16)0.36671 (9)0.2974 (2)0.0233 (5)
C130.38534 (16)0.23580 (9)0.3073 (2)0.0241 (5)
C140.24524 (17)0.24835 (9)0.2461 (2)0.0286 (5)
C150.14573 (18)0.19732 (10)0.2673 (2)0.0313 (5)
C160.18916 (19)0.13307 (9)0.3491 (2)0.0301 (5)
C170.32598 (19)0.11634 (9)0.4043 (2)0.0297 (5)
C180.42396 (18)0.16837 (9)0.3835 (2)0.0266 (5)
C210.8749 (2)0.42202 (11)0.1351 (3)0.0420 (7)
H40.129400.434700.523900.0320*
H50.290100.351000.468200.0320*
H70.483900.509300.243900.0280*
H100.645900.222700.232200.0320*
H140.217900.292800.188900.0340*
H150.050500.206300.226900.0380*
H170.352400.070400.455200.0360*
H180.519000.158200.421600.0320*
H21A0.802500.442700.050100.0630*
H21B0.965200.429100.102800.0630*
H21C0.873800.446900.240300.0630*
U11U22U33U12U13U23
S200.0311 (3)0.0261 (3)0.0757 (4)0.0036 (2)0.0258 (2)−0.0011 (2)
F190.0400 (6)0.0307 (6)0.0661 (8)−0.0095 (5)0.0210 (6)0.0042 (5)
N10.0261 (7)0.0188 (7)0.0413 (8)0.0027 (5)0.0087 (6)0.0029 (6)
N20.0264 (7)0.0217 (7)0.0478 (9)0.0046 (6)0.0104 (6)0.0033 (6)
N30.0264 (7)0.0230 (7)0.0436 (9)0.0066 (6)0.0112 (6)0.0017 (6)
N3A0.0207 (6)0.0193 (6)0.0304 (7)0.0018 (5)0.0066 (5)0.0006 (5)
N80.0218 (7)0.0208 (7)0.0377 (8)0.0005 (5)0.0073 (6)−0.0022 (6)
N100.0239 (7)0.0182 (6)0.0395 (8)0.0026 (5)0.0067 (6)−0.0020 (6)
C40.0273 (8)0.0208 (8)0.0342 (9)−0.0014 (6)0.0113 (7)0.0034 (7)
C50.0304 (8)0.0185 (8)0.0311 (9)−0.0003 (6)0.0076 (7)0.0027 (7)
C60.0209 (7)0.0192 (7)0.0255 (8)0.0000 (6)0.0019 (6)−0.0016 (6)
C70.0202 (7)0.0204 (7)0.0293 (8)−0.0014 (6)0.0059 (6)−0.0012 (6)
C7A0.0211 (7)0.0191 (7)0.0286 (8)−0.0018 (6)0.0037 (6)0.0000 (6)
C90.0219 (8)0.0219 (8)0.0390 (9)0.0005 (6)0.0062 (7)−0.0014 (7)
C110.0228 (8)0.0194 (8)0.0287 (8)0.0020 (6)0.0027 (6)−0.0015 (6)
C120.0221 (8)0.0198 (8)0.0275 (8)0.0007 (6)0.0031 (6)−0.0004 (6)
C130.0265 (8)0.0193 (8)0.0262 (8)0.0003 (6)0.0043 (6)−0.0028 (6)
C140.0283 (9)0.0198 (8)0.0364 (10)0.0018 (7)0.0022 (7)0.0005 (7)
C150.0246 (8)0.0256 (8)0.0432 (10)0.0009 (7)0.0044 (7)−0.0034 (8)
C160.0320 (9)0.0227 (8)0.0382 (9)−0.0057 (7)0.0133 (7)−0.0041 (7)
C170.0389 (10)0.0212 (8)0.0299 (9)0.0016 (7)0.0088 (7)0.0025 (7)
C180.0280 (8)0.0222 (8)0.0288 (8)0.0027 (6)0.0026 (7)−0.0005 (6)
C210.0417 (11)0.0295 (10)0.0608 (13)−0.0047 (8)0.0255 (10)−0.0009 (9)
S20—C91.7488 (18)C11—C121.385 (2)
S20—C211.793 (2)C11—C131.467 (2)
F19—C161.359 (2)C13—C181.399 (2)
N1—N21.350 (2)C13—C141.399 (2)
N1—C7A1.345 (2)C14—C151.382 (2)
N2—N31.295 (2)C15—C161.378 (2)
N3—N3A1.361 (2)C16—C171.375 (3)
N3A—C41.375 (2)C17—C181.383 (2)
N3A—C7A1.362 (2)C4—H40.9500
N8—C91.313 (2)C5—H50.9500
N8—C121.389 (2)C7—H70.9500
N10—C91.356 (2)C14—H140.9500
N10—C111.377 (2)C15—H150.9500
N10—H100.9200C17—H170.9500
C4—C51.346 (2)C18—H180.9500
C5—C61.434 (2)C21—H21A0.9800
C6—C71.382 (2)C21—H21B0.9800
C6—C121.464 (2)C21—H21C0.9800
C7—C7A1.402 (2)
C9—S20—C2198.90 (9)C11—C13—C14121.46 (15)
N2—N1—C7A105.98 (13)C11—C13—C18120.11 (15)
N1—N2—N3112.64 (14)C13—C14—C15121.26 (15)
N2—N3—N3A105.28 (14)C14—C15—C16117.82 (16)
N3—N3A—C4127.32 (14)F19—C16—C17118.39 (15)
N3—N3A—C7A109.28 (13)F19—C16—C15118.32 (16)
C4—N3A—C7A123.36 (14)C15—C16—C17123.28 (17)
C9—N8—C12104.82 (14)C16—C17—C18118.02 (15)
C9—N10—C11107.42 (13)C13—C18—C17121.08 (16)
C11—N10—H10129.00N3A—C4—H4121.00
C9—N10—H10123.00C5—C4—H4121.00
N3A—C4—C5117.50 (15)C4—C5—H5119.00
C4—C5—C6121.98 (15)C6—C5—H5119.00
C5—C6—C7118.59 (14)C6—C7—H7121.00
C5—C6—C12121.68 (14)C7A—C7—H7121.00
C7—C6—C12119.71 (14)C13—C14—H14119.00
C6—C7—C7A118.90 (15)C15—C14—H14119.00
N3A—C7A—C7119.48 (14)C14—C15—H15121.00
N1—C7A—N3A106.81 (14)C16—C15—H15121.00
N1—C7A—C7133.70 (15)C16—C17—H17121.00
S20—C9—N8126.57 (13)C18—C17—H17121.00
S20—C9—N10120.80 (12)C13—C18—H18119.00
N8—C9—N10112.59 (15)C17—C18—H18119.00
N10—C11—C12104.93 (14)S20—C21—H21A109.00
C12—C11—C13134.93 (15)S20—C21—H21B109.00
N10—C11—C13120.00 (14)S20—C21—H21C109.00
N8—C12—C11110.22 (14)H21A—C21—H21B109.00
C6—C12—C11130.65 (15)H21A—C21—H21C109.00
N8—C12—C6119.13 (14)H21B—C21—H21C109.00
C14—C13—C18118.41 (15)
C21—S20—C9—N8−3.16 (18)C5—C6—C12—C1118.8 (3)
C21—S20—C9—N10174.43 (15)C7—C6—C12—N816.8 (2)
N2—N1—C7A—C7178.07 (18)C7—C6—C12—C11−162.78 (17)
N2—N1—C7A—N3A−0.43 (18)C5—C6—C12—N8−161.63 (15)
C7A—N1—N2—N30.4 (2)C12—C6—C7—C7A178.46 (15)
N1—N2—N3—N3A−0.1 (2)C6—C7—C7A—N3A−0.9 (2)
N2—N3—N3A—C7A−0.15 (18)C6—C7—C7A—N1−179.22 (18)
N2—N3—N3A—C4177.50 (16)N10—C11—C12—N81.62 (18)
N3—N3A—C7A—N10.37 (18)N10—C11—C12—C6−178.74 (16)
N3—N3A—C4—C5−179.88 (15)C13—C11—C12—N8−173.91 (17)
C7A—N3A—C4—C5−2.5 (2)C13—C11—C12—C65.7 (3)
C4—N3A—C7A—C73.9 (2)N10—C11—C13—C14−136.99 (17)
N3—N3A—C7A—C7−178.39 (15)N10—C11—C13—C1841.5 (2)
C4—N3A—C7A—N1−177.39 (15)C12—C11—C13—C1438.0 (3)
C12—N8—C9—S20177.95 (13)C12—C11—C13—C18−143.46 (19)
C9—N8—C12—C11−1.15 (18)C11—C13—C14—C15−178.13 (15)
C12—N8—C9—N100.20 (19)C18—C13—C14—C153.3 (2)
C9—N8—C12—C6179.17 (15)C11—C13—C18—C17178.80 (15)
C9—N10—C11—C12−1.45 (18)C14—C13—C18—C17−2.6 (2)
C9—N10—C11—C13174.90 (15)C13—C14—C15—C16−0.8 (2)
C11—N10—C9—S20−177.08 (12)C14—C15—C16—F19178.12 (15)
C11—N10—C9—N80.82 (19)C14—C15—C16—C17−2.6 (3)
N3A—C4—C5—C6−1.7 (2)F19—C16—C17—C18−177.45 (15)
C4—C5—C6—C74.4 (2)C15—C16—C17—C183.3 (3)
C4—C5—C6—C12−177.10 (16)C16—C17—C18—C13−0.6 (2)
C5—C6—C7—C7A−3.0 (2)
D—H···AD—HH···AD···AD—H···A
N10—H10···N1i0.922.062.9703 (19)174
N10—H10···N2i0.922.603.423 (2)151
C7—H7···N80.952.532.847 (2)100
C21—H21B···F19ii0.982.443.286 (3)144
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N10—H10⋯N1i0.922.062.9703 (19)174
N10—H10⋯N2i0.922.603.423 (2)151
C21—H21B⋯F19ii0.982.443.286 (3)144

Symmetry codes: (i) ; (ii) .

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