Literature DB >> 21579861

1-Methyl-1,2,3,4-tetra-hydro-carbolin-2-ium-3-carboxyl-ate.

Cheng-Tao Lu, Lin-Lin Jing, Hai-Bo Wang, Hai-Feng Tang, Xiao-Li Sun.   

Abstract

The title compound, C(13)H(14)N(2)O(2), is a natural product isolated from Cicer arietinum L. (chickpea). The benzene ring and pyrrole rings display planar conformations and the piperidine ring has a half-chair conformation. Inter-molecular C-H⋯π inter-actions between a methyl H atom and the pyrrole ring of an adjacent mol-ecule are present in the crystal structure.

Entities:  

Year:  2010        PMID: 21579861      PMCID: PMC2979936          DOI: 10.1107/S1600536810002163

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isolation of the title compound as a natural product, see: Kicha et al. (2003 ▶). For the bioactivity of the title compound, see: Adachi et al. (1991 ▶); Ogawa & Adachi (1993 ▶).

Experimental

Crystal data

C13H14N2O2 M = 230.26 Orthorhombic, a = 4.9772 (8) Å b = 14.520 (2) Å c = 15.307 (2) Å V = 1106.3 (3) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.32 × 0.23 × 0.13 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.971, T max = 0.988 5528 measured reflections 1166 independent reflections 880 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.117 S = 1.00 1166 reflections 156 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810002163/pb2017sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810002163/pb2017Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H14N2O2F(000) = 488
Mr = 230.26Dx = 1.383 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 666 reflections
a = 4.9772 (8) Åθ = 2.7–18.0°
b = 14.520 (2) ŵ = 0.10 mm1
c = 15.307 (2) ÅT = 296 K
V = 1106.3 (3) Å3Needle, colorless
Z = 40.32 × 0.23 × 0.13 mm
Bruker APEXII CCD area-detector diffractometer1166 independent reflections
Radiation source: fine-focus sealed tube880 reflections with I > 2σ(I)
graphiteRint = 0.053
phi and ω scansθmax = 25.1°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −5→5
Tmin = 0.971, Tmax = 0.988k = −17→15
5528 measured reflectionsl = −16→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H-atom parameters constrained
wR(F2) = 0.117w = 1/[σ2(Fo2) + (0.074P)2] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
1166 reflectionsΔρmax = 0.22 e Å3
156 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.026 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.3184 (7)0.56276 (18)0.71317 (15)0.0402 (7)
H10.28780.50450.71040.048*
N2−0.0123 (6)0.67564 (14)0.90152 (14)0.0319 (6)
H2A−0.14860.66680.93930.038*
H2B0.14210.67290.93200.038*
O2−0.0135 (5)0.82385 (13)1.00915 (13)0.0390 (6)
O1−0.2002 (7)0.91384 (15)0.90704 (15)0.0581 (8)
C10.4997 (7)0.6110 (2)0.66226 (19)0.0382 (8)
C20.6786 (8)0.5800 (3)0.59940 (19)0.0476 (9)
H20.68260.51830.58300.057*
C30.8495 (8)0.6429 (3)0.5621 (2)0.0539 (11)
H30.97450.62320.52090.065*
C40.8388 (8)0.7364 (3)0.5849 (2)0.0503 (9)
H40.95230.77820.55740.060*
C50.6633 (8)0.7669 (3)0.6473 (2)0.0441 (9)
H50.65730.82900.66220.053*
C60.4939 (7)0.7043 (2)0.68836 (19)0.0348 (7)
C70.2982 (7)0.7105 (2)0.75634 (17)0.0343 (8)
C80.2132 (7)0.7924 (2)0.8087 (2)0.0369 (8)
H8A0.17590.84370.76990.044*
H8B0.35740.81050.84770.044*
C9−0.0383 (7)0.7696 (2)0.86201 (19)0.0325 (8)
H9−0.19240.76900.82220.039*
C10−0.0145 (7)0.59951 (19)0.83517 (18)0.0345 (8)
H10−0.19020.59890.80620.041*
C110.1945 (8)0.6245 (2)0.76945 (19)0.0348 (8)
C120.0263 (10)0.5078 (2)0.8807 (2)0.0550 (11)
H12A0.19710.50780.90980.082*
H12B0.02190.45910.83830.082*
H12C−0.11420.49860.92280.082*
C13−0.0897 (7)0.8423 (2)0.9318 (2)0.0355 (8)
U11U22U33U12U13U23
N10.0454 (19)0.0379 (14)0.0374 (15)−0.0017 (15)0.0046 (15)−0.0056 (11)
N20.0258 (15)0.0372 (13)0.0326 (13)−0.0020 (13)−0.0009 (14)−0.0002 (10)
O20.0340 (14)0.0448 (13)0.0381 (12)0.0015 (11)0.0012 (12)−0.0039 (10)
O10.076 (2)0.0457 (14)0.0523 (14)0.0215 (15)0.0009 (15)0.0018 (12)
C10.035 (2)0.0501 (19)0.0292 (16)0.0034 (19)−0.0021 (17)−0.0026 (13)
C20.048 (2)0.061 (2)0.0336 (17)0.011 (2)0.0031 (19)−0.0081 (17)
C30.038 (2)0.087 (3)0.037 (2)0.005 (2)0.0069 (19)−0.0038 (19)
C40.034 (2)0.079 (3)0.0377 (18)−0.009 (2)0.0057 (19)0.0038 (18)
C50.038 (2)0.056 (2)0.0382 (17)−0.0014 (19)0.0014 (18)0.0012 (15)
C60.0291 (18)0.0470 (18)0.0283 (14)0.0000 (17)−0.0003 (16)−0.0008 (13)
C70.032 (2)0.0406 (17)0.0303 (16)−0.0006 (15)−0.0002 (16)−0.0013 (12)
C80.033 (2)0.0390 (17)0.0383 (16)−0.0018 (15)0.0021 (16)0.0035 (13)
C90.026 (2)0.0388 (17)0.0324 (15)0.0009 (14)0.0005 (15)0.0017 (13)
C100.0354 (19)0.0374 (17)0.0306 (16)−0.0050 (17)0.0013 (17)−0.0018 (12)
C110.0312 (19)0.0412 (18)0.0319 (15)0.0003 (15)−0.0038 (15)−0.0034 (13)
C120.073 (3)0.041 (2)0.051 (2)−0.001 (2)0.009 (2)0.0002 (15)
C130.0307 (19)0.0395 (18)0.0363 (18)−0.0005 (15)0.0043 (15)0.0011 (14)
N1—C11.383 (4)C5—C61.390 (5)
N1—C111.388 (4)C5—H50.9300
N1—H10.8600C6—C71.428 (5)
N2—C91.498 (4)C7—C111.367 (4)
N2—C101.501 (3)C7—C81.495 (4)
N2—H2A0.9000C8—C91.530 (5)
N2—H2B0.9000C8—H8A0.9700
O2—C131.272 (4)C8—H8B0.9700
O1—C131.234 (4)C9—C131.523 (4)
C1—C21.386 (5)C9—H90.9800
C1—C61.412 (4)C10—C111.492 (4)
C2—C31.373 (5)C10—C121.516 (4)
C2—H20.9300C10—H100.9800
C3—C41.404 (5)C12—H12A0.9600
C3—H30.9300C12—H12B0.9600
C4—C51.368 (5)C12—H12C0.9600
C4—H40.9300
C1—N1—C11108.2 (3)C7—C8—C9110.2 (3)
C1—N1—H1125.9C7—C8—H8A109.6
C11—N1—H1125.9C9—C8—H8A109.6
C9—N2—C10113.4 (2)C7—C8—H8B109.6
C9—N2—H2A108.9C9—C8—H8B109.6
C10—N2—H2A108.9H8A—C8—H8B108.1
C9—N2—H2B108.9N2—C9—C13111.3 (2)
C10—N2—H2B108.9N2—C9—C8110.0 (3)
H2A—N2—H2B107.7C13—C9—C8111.2 (3)
N1—C1—C2130.2 (3)N2—C9—H9108.1
N1—C1—C6108.2 (3)C13—C9—H9108.1
C2—C1—C6121.4 (3)C8—C9—H9108.1
C3—C2—C1118.1 (3)C11—C10—N2105.8 (2)
C3—C2—H2121.0C11—C10—C12115.5 (3)
C1—C2—H2121.0N2—C10—C12109.5 (2)
C2—C3—C4121.1 (3)C11—C10—H10108.6
C2—C3—H3119.5N2—C10—H10108.6
C4—C3—H3119.5C12—C10—H10108.6
C5—C4—C3120.8 (4)C7—C11—N1109.4 (3)
C5—C4—H4119.6C7—C11—C10125.8 (3)
C3—C4—H4119.6N1—C11—C10124.9 (3)
C4—C5—C6119.4 (3)C10—C12—H12A109.5
C4—C5—H5120.3C10—C12—H12B109.5
C6—C5—H5120.3H12A—C12—H12B109.5
C5—C6—C1119.1 (3)C10—C12—H12C109.5
C5—C6—C7134.5 (3)H12A—C12—H12C109.5
C1—C6—C7106.3 (3)H12B—C12—H12C109.5
C11—C7—C6107.8 (3)O1—C13—O2126.5 (3)
C11—C7—C8122.8 (3)O1—C13—C9116.3 (3)
C6—C7—C8129.4 (3)O2—C13—C9117.2 (3)
C11—N1—C1—C2177.1 (3)C10—N2—C9—C8−67.4 (3)
C11—N1—C1—C61.3 (4)C7—C8—C9—N242.5 (3)
N1—C1—C2—C3−176.0 (3)C7—C8—C9—C13166.2 (3)
C6—C1—C2—C3−0.7 (5)C9—N2—C10—C1152.2 (3)
C1—C2—C3—C4−1.8 (5)C9—N2—C10—C12177.2 (3)
C2—C3—C4—C52.2 (6)C6—C7—C11—N10.7 (4)
C3—C4—C5—C60.0 (6)C8—C7—C11—N1−178.1 (3)
C4—C5—C6—C1−2.4 (5)C6—C7—C11—C10179.4 (3)
C4—C5—C6—C7177.5 (4)C8—C7—C11—C100.6 (5)
N1—C1—C6—C5179.0 (3)C1—N1—C11—C7−1.3 (4)
C2—C1—C6—C52.8 (5)C1—N1—C11—C10−180.0 (3)
N1—C1—C6—C7−0.9 (3)N2—C10—C11—C7−19.6 (4)
C2—C1—C6—C7−177.1 (3)C12—C10—C11—C7−140.9 (4)
C5—C6—C7—C11−179.8 (4)N2—C10—C11—N1158.9 (3)
C1—C6—C7—C110.1 (4)C12—C10—C11—N137.6 (4)
C5—C6—C7—C8−1.1 (6)N2—C9—C13—O1−156.8 (3)
C1—C6—C7—C8178.8 (3)C8—C9—C13—O180.3 (4)
C11—C7—C8—C9−12.0 (4)N2—C9—C13—O223.7 (4)
C6—C7—C8—C9169.5 (3)C8—C9—C13—O2−99.2 (3)
C10—N2—C9—C13168.9 (3)
Cg1 is the centroid of C1/C6/C7/C11/N1 pyrrole ring.
D—H···AD—HH···AD···AD—H···A
C10—H10···Cg1i0.982.693.644 (3)165
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of C1/C6/C7/C11/N1 pyrrole ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10⋯Cg1i0.982.693.644 (3)165

Symmetry code: (i) .

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