Literature DB >> 21579856

3,3'-Dibutanoyl-1,1'-(o-phenyl-ene)dithio-urea.

Aamer Saeed, Naeem Abbas, Hummera Rafique, Michael Bolte.   

Abstract

The mol-ecular conformation of the title compound, C(16)H(22)N(4)O(2)S(2), is stabilized by two intramolecular N-H⋯O hydrogen bonds. The crystal packing shows N-H⋯O and N-H⋯S hydrogen bonds.

Entities:  

Year:  2010        PMID: 21579856      PMCID: PMC2979833          DOI: 10.1107/S1600536810001789

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the biological activity of bisthio­ureas, see: Berkessel et al. (2006 ▶); Moloto et al. (2004 ▶). For their applications, see: Atia et al. (2005 ▶); Hu et al. (2009 ▶); Phetsuksiri et al. (2003 ▶). For the synthesis of the title compound, see: Succaw et al. (2005 ▶).

Experimental

Crystal data

C16H22N4O2S2 M = 366.50 Monoclinic, a = 8.8099 (5) Å b = 16.4925 (7) Å c = 12.3923 (8) Å β = 91.949 (5)° V = 1799.53 (17) Å3 Z = 4 Mo Kα radiation μ = 0.31 mm−1 T = 173 K 0.28 × 0.28 × 0.23 mm

Data collection

Stoe IPDS II two-circle diffractometer Absorption correction: multi-scan (MULABS; Spek, 2009 ▶; Blessing, 1995 ▶) T min = 0.918, T max = 0.932 22483 measured reflections 3360 independent reflections 2890 reflections with I > 2σ(I) R int = 0.087

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.095 S = 1.04 3360 reflections 229 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.33 e Å−3 Data collection: X-AREA (Stoe & Cie, 2001 ▶); cell refinement: X-AREA; data reduction: X-AREA (Stoe & Cie, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810001789/bg2318sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810001789/bg2318Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H22N4O2S2F(000) = 776
Mr = 366.50Dx = 1.353 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 20465 reflections
a = 8.8099 (5) Åθ = 3.4–26.0°
b = 16.4925 (7) ŵ = 0.31 mm1
c = 12.3923 (8) ÅT = 173 K
β = 91.949 (5)°Block, colourless
V = 1799.53 (17) Å30.28 × 0.28 × 0.23 mm
Z = 4
Stoe IPDS II two-circle diffractometer3360 independent reflections
Radiation source: fine-focus sealed tube2890 reflections with I > 2σ(I)
graphiteRint = 0.087
ω scansθmax = 25.6°, θmin = 3.4°
Absorption correction: multi-scan (MULABS; Spek, 2009; Blessing, 1995)h = −10→10
Tmin = 0.918, Tmax = 0.932k = −19→18
22483 measured reflectionsl = −15→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.095H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0595P)2 + 0.139P] where P = (Fo2 + 2Fc2)/3
3360 reflections(Δ/σ)max = 0.001
229 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.07444 (5)0.68569 (3)0.35994 (3)0.02446 (14)
S20.47542 (5)0.79179 (3)0.52094 (3)0.02947 (14)
O10.38901 (14)0.53284 (9)0.57778 (9)0.0278 (3)
O20.83408 (13)0.59749 (8)0.58037 (9)0.0224 (3)
C10.42857 (18)0.65251 (9)0.31239 (12)0.0152 (3)
C20.57714 (18)0.67920 (9)0.33537 (12)0.0154 (3)
C30.66576 (19)0.70843 (10)0.25383 (13)0.0206 (3)
H30.76740.72490.26950.025*
C40.6054 (2)0.71355 (11)0.14871 (13)0.0228 (4)
H40.66540.73420.09270.027*
C50.4579 (2)0.68847 (10)0.12589 (12)0.0211 (4)
H50.41700.69240.05420.025*
C60.36860 (19)0.65746 (10)0.20698 (12)0.0180 (3)
H60.26780.63990.19060.022*
N110.34909 (15)0.61572 (8)0.39740 (10)0.0160 (3)
H110.401 (2)0.5867 (12)0.4430 (16)0.019*
C110.20588 (17)0.62849 (10)0.42462 (12)0.0159 (3)
N120.16371 (16)0.58921 (8)0.51872 (10)0.0168 (3)
H120.072 (2)0.5945 (12)0.5357 (15)0.020*
C120.25388 (19)0.54519 (10)0.59085 (12)0.0195 (3)
C130.1723 (2)0.51260 (12)0.68687 (14)0.0272 (4)
H13A0.13160.45810.66910.033*
H13B0.08520.54840.70170.033*
C140.2751 (2)0.50692 (12)0.78795 (14)0.0285 (4)
H14A0.22060.47760.84460.034*
H14B0.36630.47480.77110.034*
C150.3251 (3)0.58888 (14)0.83166 (17)0.0447 (5)
H15A0.39120.58120.89610.054*
H15B0.23570.62050.85060.054*
H15C0.38090.61790.77650.054*
N210.64067 (16)0.67101 (9)0.44277 (10)0.0170 (3)
H210.708 (2)0.6374 (13)0.4558 (15)0.020*
C210.59630 (17)0.71486 (10)0.52676 (12)0.0171 (3)
N220.65944 (15)0.69253 (8)0.62711 (11)0.0172 (3)
H220.630 (2)0.7231 (13)0.6794 (16)0.021*
C220.77077 (18)0.63670 (10)0.65070 (12)0.0178 (3)
C230.8064 (2)0.62499 (11)0.76915 (12)0.0223 (4)
H23A0.74620.66360.81140.027*
H23B0.91540.63610.78470.027*
C240.7692 (2)0.53829 (12)0.80244 (14)0.0308 (4)
H24A0.66170.52640.78250.037*
H24B0.83350.50000.76270.037*
C250.7954 (4)0.52563 (15)0.92284 (17)0.0580 (8)
H25A0.76940.46970.94150.070*
H25B0.73140.56320.96230.070*
H25C0.90240.53580.94240.070*
U11U22U33U12U13U23
S10.0188 (2)0.0308 (3)0.0237 (2)0.00497 (16)0.00078 (16)0.01004 (17)
S20.0334 (3)0.0301 (3)0.0245 (2)0.01694 (19)−0.00509 (18)−0.00387 (18)
O10.0216 (6)0.0399 (8)0.0223 (6)0.0105 (5)0.0046 (5)0.0104 (5)
O20.0225 (6)0.0264 (7)0.0184 (6)0.0085 (5)−0.0012 (4)−0.0018 (5)
C10.0168 (7)0.0135 (8)0.0153 (7)0.0021 (6)0.0025 (6)0.0011 (6)
C20.0181 (8)0.0137 (8)0.0144 (7)0.0028 (6)−0.0005 (6)−0.0001 (6)
C30.0182 (8)0.0201 (9)0.0236 (8)0.0003 (6)0.0022 (6)0.0020 (6)
C40.0268 (9)0.0219 (9)0.0200 (8)0.0017 (7)0.0073 (6)0.0058 (7)
C50.0289 (9)0.0213 (9)0.0130 (7)0.0052 (7)0.0006 (6)0.0007 (6)
C60.0191 (8)0.0172 (8)0.0175 (7)0.0012 (6)−0.0026 (6)−0.0011 (6)
N110.0152 (6)0.0189 (7)0.0138 (6)0.0005 (5)−0.0007 (5)0.0040 (5)
C110.0175 (8)0.0155 (8)0.0145 (7)−0.0034 (6)−0.0010 (6)−0.0020 (6)
N120.0137 (7)0.0200 (7)0.0168 (6)0.0006 (5)0.0021 (5)0.0035 (5)
C120.0216 (8)0.0201 (8)0.0169 (7)0.0026 (6)0.0017 (6)0.0010 (6)
C130.0256 (9)0.0324 (10)0.0242 (8)0.0047 (7)0.0063 (7)0.0108 (7)
C140.0391 (10)0.0280 (10)0.0187 (8)0.0083 (8)0.0043 (7)0.0074 (7)
C150.0663 (16)0.0377 (12)0.0303 (10)0.0012 (11)0.0033 (10)−0.0059 (9)
N210.0153 (7)0.0195 (7)0.0159 (6)0.0045 (5)−0.0027 (5)−0.0006 (5)
C210.0147 (7)0.0185 (8)0.0180 (7)−0.0001 (6)0.0001 (6)0.0006 (6)
N220.0190 (7)0.0177 (7)0.0148 (6)0.0015 (5)−0.0010 (5)−0.0029 (5)
C220.0186 (8)0.0168 (8)0.0178 (7)−0.0021 (6)−0.0028 (6)0.0003 (6)
C230.0296 (9)0.0203 (9)0.0167 (8)0.0036 (7)−0.0047 (6)−0.0010 (6)
C240.0442 (11)0.0265 (10)0.0215 (8)−0.0072 (8)0.0001 (8)0.0024 (7)
C250.115 (2)0.0344 (13)0.0240 (10)−0.0185 (14)−0.0110 (12)0.0085 (9)
S1—C111.6763 (16)C13—H13A0.9900
S2—C211.6566 (16)C13—H13B0.9900
O1—C121.224 (2)C14—C151.516 (3)
O2—C221.234 (2)C14—H14A0.9900
C1—C61.395 (2)C14—H14B0.9900
C1—C21.401 (2)C15—H15A0.9800
C1—N111.4207 (19)C15—H15B0.9800
C2—C31.385 (2)C15—H15C0.9800
C2—N211.4325 (19)N21—C211.337 (2)
C3—C41.393 (2)N21—H210.83 (2)
C3—H30.9500C21—N221.395 (2)
C4—C51.384 (3)N22—C221.370 (2)
C4—H40.9500N22—H220.87 (2)
C5—C61.394 (2)C22—C231.503 (2)
C5—H50.9500C23—C241.527 (3)
C6—H60.9500C23—H23A0.9900
N11—C111.334 (2)C23—H23B0.9900
N11—H110.86 (2)C24—C251.516 (3)
C11—N121.395 (2)C24—H24A0.9900
N12—C121.382 (2)C24—H24B0.9900
N12—H120.84 (2)C25—H25A0.9800
C12—C131.510 (2)C25—H25B0.9800
C13—C141.524 (3)C25—H25C0.9800
C6—C1—C2119.57 (14)C15—C14—H14B108.9
C6—C1—N11122.61 (14)C13—C14—H14B108.9
C2—C1—N11117.65 (13)H14A—C14—H14B107.7
C3—C2—C1120.47 (14)C14—C15—H15A109.5
C3—C2—N21119.91 (14)C14—C15—H15B109.5
C1—C2—N21119.48 (14)H15A—C15—H15B109.5
C2—C3—C4119.80 (15)C14—C15—H15C109.5
C2—C3—H3120.1H15A—C15—H15C109.5
C4—C3—H3120.1H15B—C15—H15C109.5
C5—C4—C3119.94 (15)C21—N21—C2123.85 (14)
C5—C4—H4120.0C21—N21—H21116.0 (13)
C3—C4—H4120.0C2—N21—H21120.1 (13)
C4—C5—C6120.74 (15)N21—C21—N22115.68 (14)
C4—C5—H5119.6N21—C21—S2125.81 (12)
C6—C5—H5119.6N22—C21—S2118.52 (12)
C5—C6—C1119.45 (15)C22—N22—C21128.97 (14)
C5—C6—H6120.3C22—N22—H22117.5 (13)
C1—C6—H6120.3C21—N22—H22113.1 (13)
C11—N11—C1127.91 (14)O2—C22—N22122.64 (14)
C11—N11—H11114.1 (12)O2—C22—C23122.56 (15)
C1—N11—H11117.4 (13)N22—C22—C23114.77 (14)
N11—C11—N12114.78 (14)C22—C23—C24110.15 (14)
N11—C11—S1127.73 (12)C22—C23—H23A109.6
N12—C11—S1117.49 (11)C24—C23—H23A109.6
C12—N12—C11128.39 (14)C22—C23—H23B109.6
C12—N12—H12115.2 (13)C24—C23—H23B109.6
C11—N12—H12116.3 (13)H23A—C23—H23B108.1
O1—C12—N12122.84 (14)C25—C24—C23111.58 (16)
O1—C12—C13122.44 (15)C25—C24—H24A109.3
N12—C12—C13114.71 (14)C23—C24—H24A109.3
C12—C13—C14112.57 (15)C25—C24—H24B109.3
C12—C13—H13A109.1C23—C24—H24B109.3
C14—C13—H13A109.1H24A—C24—H24B108.0
C12—C13—H13B109.1C24—C25—H25A109.5
C14—C13—H13B109.1C24—C25—H25B109.5
H13A—C13—H13B107.8H25A—C25—H25B109.5
C15—C14—C13113.35 (16)C24—C25—H25C109.5
C15—C14—H14A108.9H25A—C25—H25C109.5
C13—C14—H14A108.9H25B—C25—H25C109.5
C6—C1—C2—C3−1.7 (2)C11—N12—C12—O1−2.4 (3)
N11—C1—C2—C3173.81 (15)C11—N12—C12—C13178.22 (16)
C6—C1—C2—N21−177.47 (14)O1—C12—C13—C1431.9 (2)
N11—C1—C2—N21−2.0 (2)N12—C12—C13—C14−148.67 (15)
C1—C2—C3—C41.9 (2)C12—C13—C14—C1567.2 (2)
N21—C2—C3—C4177.67 (15)C3—C2—N21—C21113.70 (18)
C2—C3—C4—C5−0.8 (3)C1—C2—N21—C21−70.5 (2)
C3—C4—C5—C6−0.4 (3)C2—N21—C21—N22173.38 (14)
C4—C5—C6—C10.6 (2)C2—N21—C21—S2−6.7 (2)
C2—C1—C6—C50.4 (2)N21—C21—N22—C226.5 (2)
N11—C1—C6—C5−174.83 (15)S2—C21—N22—C22−173.42 (13)
C6—C1—N11—C11−49.1 (2)C21—N22—C22—O21.0 (3)
C2—C1—N11—C11135.57 (16)C21—N22—C22—C23−177.18 (15)
C1—N11—C11—N12−174.00 (14)O2—C22—C23—C24−61.4 (2)
C1—N11—C11—S15.6 (2)N22—C22—C23—C24116.77 (17)
N11—C11—N12—C126.0 (2)C22—C23—C24—C25−176.8 (2)
S1—C11—N12—C12−173.65 (13)
D—H···AD—HH···AD···AD—H···A
N11—H11···O10.86 (2)1.90 (2)2.6336 (17)142.6 (17)
N12—H12···O2i0.84 (2)2.19 (2)3.0309 (18)175.3 (19)
N21—H21···O20.83 (2)1.98 (2)2.6616 (18)139.1 (18)
N22—H22···S1ii0.87 (2)2.75 (2)3.6147 (14)172.0 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N11—H11⋯O10.86 (2)1.90 (2)2.6336 (17)142.6 (17)
N12—H12⋯O2i0.84 (2)2.19 (2)3.0309 (18)175.3 (19)
N21—H21⋯O20.83 (2)1.98 (2)2.6616 (18)139.1 (18)
N22—H22⋯S1ii0.87 (2)2.75 (2)3.6147 (14)172.0 (17)

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

3.  Asymmetric Morita-Baylis-Hillman reaction catalyzed by isophoronediamine-derived bis(thio)urea organocatalysts.

Authors:  Albrecht Berkessel; Katrin Roland; Jörg M Neudörfl
Journal:  Org Lett       Date:  2006-09-14       Impact factor: 6.005

4.  Unique mechanism of action of the thiourea drug isoxyl on Mycobacterium tuberculosis.

Authors:  Benjawan Phetsuksiri; Mary Jackson; Hataichanok Scherman; Michael McNeil; Gurdyal S Besra; Alain R Baulard; Richard A Slayden; Andrea E DeBarber; Clifton E Barry; Mark S Baird; Dean C Crick; Patrick J Brennan
Journal:  J Biol Chem       Date:  2003-10-14       Impact factor: 5.157

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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