Literature DB >> 21579837

(E)-1-(3-Cyano-benzyl-idene)thio-semi-carbazide N,N-dimethyl-formamide solvate.

Mei Shi1.   

Abstract

The title compound, C(9)H(8)N(4)S·C(3)H(7)NO, adopts an E configuration about both the C=N and C-N bonds. Inter-molecular N-H⋯O hydrogen bonding links the compound to the DMF solvent molecule. The crystal packing is characterized by chains of mol-ecules linked by inter-molecular N-H⋯S hydrogen-bonding inter-actions.

Entities:  

Year:  2010        PMID: 21579837      PMCID: PMC2979889          DOI: 10.1107/S160053681000214X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of thio­semicarbazones, see: Lovejoy & Richardson et al. (2002 ▶). For a related structure, see: Wu et al. (2009 ▶). For comparitive geometrical parameters, see: Sutton et al. (1965 ▶).

Experimental

Crystal data

C9H8N4n class="Chemical">C3H7NO M = 277.35 Monoclinic, a = 7.312 (7) Å b = 8.945 (3) Å c = 22.316 (19) Å β = 92.12 (2)° V = 1458.6 (19) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 293 K 0.20 × 0.20 × 0.20 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.742, T max = 1.000 9561 measured reflections 3280 independent reflections 2065 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.109 S = 1.01 3280 reflections 172 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681000214X/pv2253sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681000214X/pv2253Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H8N4S·C3H7NOF(000) = 584
Mr = 277.35Dx = 1.263 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2851 reflections
a = 7.312 (7) Åθ = 2.3–27.4°
b = 8.945 (3) ŵ = 0.22 mm1
c = 22.316 (19) ÅT = 293 K
β = 92.12 (2)°Block, pale yellow
V = 1458.6 (19) Å30.20 × 0.20 × 0.20 mm
Z = 4
Rigaku Mercury2 diffractometer3280 independent reflections
Radiation source: fine-focus sealed tube2065 reflections with I > 2σ(I)
graphiteRint = 0.052
Detector resolution: 13.6612 pixels mm-1θmax = 27.4°, θmin = 2.5°
CCD_Profile_fitting scansh = −7→9
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −11→11
Tmin = 0.742, Tmax = 1.000l = −28→24
9561 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.020P)2 + 0.850P] where P = (Fo2 + 2Fc2)/3
3280 reflections(Δ/σ)max = 0.001
172 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.60691 (11)0.46135 (8)0.74146 (3)0.0636 (2)
N20.7389 (2)0.40996 (19)0.57477 (8)0.0425 (4)
N30.6727 (2)0.4707 (2)0.62652 (8)0.0451 (5)
H3A0.61980.55660.62580.054*
C60.8765 (3)0.2925 (2)0.46844 (10)0.0430 (5)
H6A0.88570.23270.50250.052*
N40.7782 (3)0.2634 (2)0.67556 (9)0.0585 (6)
H4A0.81810.23200.64200.070*
H4B0.79390.21020.70740.070*
C80.7256 (3)0.4903 (2)0.52748 (10)0.0428 (5)
H8A0.67240.58460.52880.051*
C90.6924 (3)0.3936 (2)0.67810 (10)0.0441 (5)
C71.0229 (3)0.0938 (3)0.41270 (10)0.0518 (6)
C10.7947 (3)0.4329 (2)0.47102 (9)0.0402 (5)
N11.0774 (3)−0.0249 (3)0.41178 (10)0.0714 (7)
C50.9444 (3)0.2423 (2)0.41459 (10)0.0444 (5)
C20.7832 (3)0.5198 (3)0.41938 (10)0.0501 (6)
H2B0.72950.61400.42070.060*
C30.8504 (3)0.4685 (3)0.36610 (10)0.0565 (6)
H3B0.84070.52810.33200.068*
C40.9316 (3)0.3298 (3)0.36311 (10)0.0535 (6)
H4C0.97700.29530.32730.064*
N50.4289 (3)0.9814 (2)0.63750 (9)0.0565 (5)
C100.4945 (4)0.8452 (3)0.64567 (13)0.0641 (7)
H10A0.49040.80550.68410.077*
O10.5606 (3)0.76602 (19)0.60695 (9)0.0718 (6)
C110.4348 (4)1.0502 (3)0.57878 (13)0.0756 (8)
H11A0.48690.98130.55120.113*
H11B0.50851.13890.58130.113*
H11C0.31291.07590.56500.113*
C120.3501 (4)1.0680 (4)0.68517 (15)0.0925 (11)
H12A0.35211.00990.72140.139*
H12B0.22611.09360.67400.139*
H12C0.42021.15770.69170.139*
U11U22U33U12U13U23
S10.0917 (5)0.0516 (4)0.0489 (4)−0.0029 (4)0.0207 (3)−0.0114 (3)
N20.0512 (12)0.0372 (9)0.0396 (10)0.0037 (8)0.0069 (9)−0.0025 (8)
N30.0550 (12)0.0366 (9)0.0444 (11)0.0082 (9)0.0102 (9)−0.0053 (8)
C60.0502 (14)0.0383 (12)0.0403 (12)0.0002 (10)0.0011 (10)0.0022 (9)
N40.0848 (16)0.0461 (11)0.0454 (12)0.0152 (11)0.0121 (11)0.0056 (9)
C80.0450 (13)0.0359 (12)0.0477 (14)0.0064 (10)0.0030 (10)−0.0018 (10)
C90.0508 (15)0.0351 (11)0.0465 (13)−0.0047 (10)0.0054 (11)−0.0038 (10)
C70.0604 (16)0.0490 (14)0.0468 (14)0.0050 (12)0.0114 (12)−0.0048 (11)
C10.0421 (13)0.0373 (12)0.0413 (12)0.0011 (9)0.0014 (10)−0.0015 (9)
N10.0898 (18)0.0539 (14)0.0718 (16)0.0190 (13)0.0214 (13)−0.0032 (12)
C50.0486 (14)0.0392 (12)0.0454 (13)0.0005 (10)0.0031 (11)−0.0050 (10)
C20.0603 (16)0.0407 (12)0.0492 (14)0.0063 (11)−0.0003 (12)0.0025 (11)
C30.0730 (18)0.0554 (15)0.0408 (14)0.0039 (13)0.0006 (12)0.0081 (12)
C40.0642 (17)0.0558 (15)0.0411 (14)−0.0010 (13)0.0075 (12)−0.0042 (11)
N50.0650 (14)0.0431 (11)0.0621 (14)0.0022 (10)0.0117 (11)−0.0079 (10)
C100.074 (2)0.0515 (16)0.0665 (18)−0.0059 (14)0.0011 (15)0.0052 (13)
O10.0870 (15)0.0432 (10)0.0860 (14)0.0116 (10)0.0131 (11)−0.0066 (10)
C110.088 (2)0.0541 (17)0.086 (2)0.0066 (15)0.0132 (17)0.0126 (15)
C120.095 (2)0.083 (2)0.102 (3)−0.0076 (19)0.034 (2)−0.0443 (19)
S1—C91.680 (2)C2—C31.382 (3)
N2—C81.277 (3)C2—H2B0.9300
N2—N31.380 (2)C3—C41.378 (3)
N3—C91.345 (3)C3—H3B0.9300
N3—H3A0.8600C4—H4C0.9300
C6—C51.392 (3)N5—C101.320 (3)
C6—C11.393 (3)N5—C111.450 (3)
C6—H6A0.9300N5—C121.452 (3)
N4—C91.325 (3)C10—O11.230 (3)
N4—H4A0.8600C10—H10A0.9300
N4—H4B0.8600C11—H11A0.9600
C8—C11.467 (3)C11—H11B0.9600
C8—H8A0.9300C11—H11C0.9600
C7—N11.135 (3)C12—H12A0.9600
C7—C51.447 (3)C12—H12B0.9600
C1—C21.390 (3)C12—H12C0.9600
C5—C41.390 (3)
C8—N2—N3116.85 (18)C1—C2—H2B119.5
C9—N3—N2118.97 (18)C4—C3—C2120.5 (2)
C9—N3—H3A120.5C4—C3—H3B119.7
N2—N3—H3A120.5C2—C3—H3B119.7
C5—C6—C1119.6 (2)C3—C4—C5118.9 (2)
C5—C6—H6A120.2C3—C4—H4C120.6
C1—C6—H6A120.2C5—C4—H4C120.6
C9—N4—H4A120.0C10—N5—C11119.6 (2)
C9—N4—H4B120.0C10—N5—C12122.9 (3)
H4A—N4—H4B120.0C11—N5—C12117.5 (2)
N2—C8—C1119.7 (2)O1—C10—N5125.8 (3)
N2—C8—H8A120.2O1—C10—H10A117.1
C1—C8—H8A120.2N5—C10—H10A117.1
N4—C9—N3116.8 (2)N5—C11—H11A109.5
N4—C9—S1123.00 (18)N5—C11—H11B109.5
N3—C9—S1120.24 (17)H11A—C11—H11B109.5
N1—C7—C5177.1 (3)N5—C11—H11C109.5
C2—C1—C6118.9 (2)H11A—C11—H11C109.5
C2—C1—C8120.3 (2)H11B—C11—H11C109.5
C6—C1—C8120.8 (2)N5—C12—H12A109.5
C4—C5—C6121.1 (2)N5—C12—H12B109.5
C4—C5—C7120.5 (2)H12A—C12—H12B109.5
C6—C5—C7118.4 (2)N5—C12—H12C109.5
C3—C2—C1121.0 (2)H12A—C12—H12C109.5
C3—C2—H2B119.5H12B—C12—H12C109.5
D—H···AD—HH···AD···AD—H···A
N3—H3A···O10.861.962.795 (3)162
N4—H4A···N20.862.252.610 (3)105
N4—H4A···N1i0.862.353.101 (3)146
N4—H4B···S1ii0.862.593.364 (2)150
C8—H8A···O10.932.543.293 (3)138
C11—H11A···O10.962.342.767 (3)106
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯O10.861.962.795 (3)162
N4—H4A⋯N1i0.862.353.101 (3)146
N4—H4B⋯S1ii0.862.593.364 (2)150
C8—H8A⋯O10.932.543.293 (3)138

Symmetry codes: (i) ; (ii) .

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