| Literature DB >> 21579837 |
Mei Shi1.
Abstract
The title compound, C(9)H(8)N(4)S·C(3)H(7)NO, adopts an E configuration about both the C=N and C-N bonds. Inter-molecular N-H⋯O hydrogen bonding links the compound to the DMF solvent molecule. The crystal packing is characterized by chains of mol-ecules linked by inter-molecular N-H⋯S hydrogen-bonding inter-actions.Entities:
Year: 2010 PMID: 21579837 PMCID: PMC2979889 DOI: 10.1107/S160053681000214X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H8N4S·C3H7NO | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 2851 reflections |
| θ = 2.3–27.4° | |
| µ = 0.22 mm−1 | |
| β = 92.12 (2)° | Block, pale yellow |
| 0.20 × 0.20 × 0.20 mm | |
| Rigaku Mercury2 diffractometer | 3280 independent reflections |
| Radiation source: fine-focus sealed tube | 2065 reflections with |
| graphite | |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 27.4°, θmin = 2.5° |
| CCD_Profile_fitting scans | |
| Absorption correction: multi-scan ( | |
| 9561 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3280 reflections | (Δ/σ)max = 0.001 |
| 172 parameters | Δρmax = 0.18 e Å−3 |
| 0 restraints | Δρmin = −0.20 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.60691 (11) | 0.46135 (8) | 0.74146 (3) | 0.0636 (2) | |
| N2 | 0.7389 (2) | 0.40996 (19) | 0.57477 (8) | 0.0425 (4) | |
| N3 | 0.6727 (2) | 0.4707 (2) | 0.62652 (8) | 0.0451 (5) | |
| H3A | 0.6198 | 0.5566 | 0.6258 | 0.054* | |
| C6 | 0.8765 (3) | 0.2925 (2) | 0.46844 (10) | 0.0430 (5) | |
| H6A | 0.8857 | 0.2327 | 0.5025 | 0.052* | |
| N4 | 0.7782 (3) | 0.2634 (2) | 0.67556 (9) | 0.0585 (6) | |
| H4A | 0.8181 | 0.2320 | 0.6420 | 0.070* | |
| H4B | 0.7939 | 0.2102 | 0.7074 | 0.070* | |
| C8 | 0.7256 (3) | 0.4903 (2) | 0.52748 (10) | 0.0428 (5) | |
| H8A | 0.6724 | 0.5846 | 0.5288 | 0.051* | |
| C9 | 0.6924 (3) | 0.3936 (2) | 0.67810 (10) | 0.0441 (5) | |
| C7 | 1.0229 (3) | 0.0938 (3) | 0.41270 (10) | 0.0518 (6) | |
| C1 | 0.7947 (3) | 0.4329 (2) | 0.47102 (9) | 0.0402 (5) | |
| N1 | 1.0774 (3) | −0.0249 (3) | 0.41178 (10) | 0.0714 (7) | |
| C5 | 0.9444 (3) | 0.2423 (2) | 0.41459 (10) | 0.0444 (5) | |
| C2 | 0.7832 (3) | 0.5198 (3) | 0.41938 (10) | 0.0501 (6) | |
| H2B | 0.7295 | 0.6140 | 0.4207 | 0.060* | |
| C3 | 0.8504 (3) | 0.4685 (3) | 0.36610 (10) | 0.0565 (6) | |
| H3B | 0.8407 | 0.5281 | 0.3320 | 0.068* | |
| C4 | 0.9316 (3) | 0.3298 (3) | 0.36311 (10) | 0.0535 (6) | |
| H4C | 0.9770 | 0.2953 | 0.3273 | 0.064* | |
| N5 | 0.4289 (3) | 0.9814 (2) | 0.63750 (9) | 0.0565 (5) | |
| C10 | 0.4945 (4) | 0.8452 (3) | 0.64567 (13) | 0.0641 (7) | |
| H10A | 0.4904 | 0.8055 | 0.6841 | 0.077* | |
| O1 | 0.5606 (3) | 0.76602 (19) | 0.60695 (9) | 0.0718 (6) | |
| C11 | 0.4348 (4) | 1.0502 (3) | 0.57878 (13) | 0.0756 (8) | |
| H11A | 0.4869 | 0.9813 | 0.5512 | 0.113* | |
| H11B | 0.5085 | 1.1389 | 0.5813 | 0.113* | |
| H11C | 0.3129 | 1.0759 | 0.5650 | 0.113* | |
| C12 | 0.3501 (4) | 1.0680 (4) | 0.68517 (15) | 0.0925 (11) | |
| H12A | 0.3521 | 1.0099 | 0.7214 | 0.139* | |
| H12B | 0.2261 | 1.0936 | 0.6740 | 0.139* | |
| H12C | 0.4202 | 1.1577 | 0.6917 | 0.139* |
| S1 | 0.0917 (5) | 0.0516 (4) | 0.0489 (4) | −0.0029 (4) | 0.0207 (3) | −0.0114 (3) |
| N2 | 0.0512 (12) | 0.0372 (9) | 0.0396 (10) | 0.0037 (8) | 0.0069 (9) | −0.0025 (8) |
| N3 | 0.0550 (12) | 0.0366 (9) | 0.0444 (11) | 0.0082 (9) | 0.0102 (9) | −0.0053 (8) |
| C6 | 0.0502 (14) | 0.0383 (12) | 0.0403 (12) | 0.0002 (10) | 0.0011 (10) | 0.0022 (9) |
| N4 | 0.0848 (16) | 0.0461 (11) | 0.0454 (12) | 0.0152 (11) | 0.0121 (11) | 0.0056 (9) |
| C8 | 0.0450 (13) | 0.0359 (12) | 0.0477 (14) | 0.0064 (10) | 0.0030 (10) | −0.0018 (10) |
| C9 | 0.0508 (15) | 0.0351 (11) | 0.0465 (13) | −0.0047 (10) | 0.0054 (11) | −0.0038 (10) |
| C7 | 0.0604 (16) | 0.0490 (14) | 0.0468 (14) | 0.0050 (12) | 0.0114 (12) | −0.0048 (11) |
| C1 | 0.0421 (13) | 0.0373 (12) | 0.0413 (12) | 0.0011 (9) | 0.0014 (10) | −0.0015 (9) |
| N1 | 0.0898 (18) | 0.0539 (14) | 0.0718 (16) | 0.0190 (13) | 0.0214 (13) | −0.0032 (12) |
| C5 | 0.0486 (14) | 0.0392 (12) | 0.0454 (13) | 0.0005 (10) | 0.0031 (11) | −0.0050 (10) |
| C2 | 0.0603 (16) | 0.0407 (12) | 0.0492 (14) | 0.0063 (11) | −0.0003 (12) | 0.0025 (11) |
| C3 | 0.0730 (18) | 0.0554 (15) | 0.0408 (14) | 0.0039 (13) | 0.0006 (12) | 0.0081 (12) |
| C4 | 0.0642 (17) | 0.0558 (15) | 0.0411 (14) | −0.0010 (13) | 0.0075 (12) | −0.0042 (11) |
| N5 | 0.0650 (14) | 0.0431 (11) | 0.0621 (14) | 0.0022 (10) | 0.0117 (11) | −0.0079 (10) |
| C10 | 0.074 (2) | 0.0515 (16) | 0.0665 (18) | −0.0059 (14) | 0.0011 (15) | 0.0052 (13) |
| O1 | 0.0870 (15) | 0.0432 (10) | 0.0860 (14) | 0.0116 (10) | 0.0131 (11) | −0.0066 (10) |
| C11 | 0.088 (2) | 0.0541 (17) | 0.086 (2) | 0.0066 (15) | 0.0132 (17) | 0.0126 (15) |
| C12 | 0.095 (2) | 0.083 (2) | 0.102 (3) | −0.0076 (19) | 0.034 (2) | −0.0443 (19) |
| S1—C9 | 1.680 (2) | C2—C3 | 1.382 (3) |
| N2—C8 | 1.277 (3) | C2—H2B | 0.9300 |
| N2—N3 | 1.380 (2) | C3—C4 | 1.378 (3) |
| N3—C9 | 1.345 (3) | C3—H3B | 0.9300 |
| N3—H3A | 0.8600 | C4—H4C | 0.9300 |
| C6—C5 | 1.392 (3) | N5—C10 | 1.320 (3) |
| C6—C1 | 1.393 (3) | N5—C11 | 1.450 (3) |
| C6—H6A | 0.9300 | N5—C12 | 1.452 (3) |
| N4—C9 | 1.325 (3) | C10—O1 | 1.230 (3) |
| N4—H4A | 0.8600 | C10—H10A | 0.9300 |
| N4—H4B | 0.8600 | C11—H11A | 0.9600 |
| C8—C1 | 1.467 (3) | C11—H11B | 0.9600 |
| C8—H8A | 0.9300 | C11—H11C | 0.9600 |
| C7—N1 | 1.135 (3) | C12—H12A | 0.9600 |
| C7—C5 | 1.447 (3) | C12—H12B | 0.9600 |
| C1—C2 | 1.390 (3) | C12—H12C | 0.9600 |
| C5—C4 | 1.390 (3) | ||
| C8—N2—N3 | 116.85 (18) | C1—C2—H2B | 119.5 |
| C9—N3—N2 | 118.97 (18) | C4—C3—C2 | 120.5 (2) |
| C9—N3—H3A | 120.5 | C4—C3—H3B | 119.7 |
| N2—N3—H3A | 120.5 | C2—C3—H3B | 119.7 |
| C5—C6—C1 | 119.6 (2) | C3—C4—C5 | 118.9 (2) |
| C5—C6—H6A | 120.2 | C3—C4—H4C | 120.6 |
| C1—C6—H6A | 120.2 | C5—C4—H4C | 120.6 |
| C9—N4—H4A | 120.0 | C10—N5—C11 | 119.6 (2) |
| C9—N4—H4B | 120.0 | C10—N5—C12 | 122.9 (3) |
| H4A—N4—H4B | 120.0 | C11—N5—C12 | 117.5 (2) |
| N2—C8—C1 | 119.7 (2) | O1—C10—N5 | 125.8 (3) |
| N2—C8—H8A | 120.2 | O1—C10—H10A | 117.1 |
| C1—C8—H8A | 120.2 | N5—C10—H10A | 117.1 |
| N4—C9—N3 | 116.8 (2) | N5—C11—H11A | 109.5 |
| N4—C9—S1 | 123.00 (18) | N5—C11—H11B | 109.5 |
| N3—C9—S1 | 120.24 (17) | H11A—C11—H11B | 109.5 |
| N1—C7—C5 | 177.1 (3) | N5—C11—H11C | 109.5 |
| C2—C1—C6 | 118.9 (2) | H11A—C11—H11C | 109.5 |
| C2—C1—C8 | 120.3 (2) | H11B—C11—H11C | 109.5 |
| C6—C1—C8 | 120.8 (2) | N5—C12—H12A | 109.5 |
| C4—C5—C6 | 121.1 (2) | N5—C12—H12B | 109.5 |
| C4—C5—C7 | 120.5 (2) | H12A—C12—H12B | 109.5 |
| C6—C5—C7 | 118.4 (2) | N5—C12—H12C | 109.5 |
| C3—C2—C1 | 121.0 (2) | H12A—C12—H12C | 109.5 |
| C3—C2—H2B | 119.5 | H12B—C12—H12C | 109.5 |
| H··· | ||||
| N3—H3A···O1 | 0.86 | 1.96 | 2.795 (3) | 162 |
| N4—H4A···N2 | 0.86 | 2.25 | 2.610 (3) | 105 |
| N4—H4A···N1i | 0.86 | 2.35 | 3.101 (3) | 146 |
| N4—H4B···S1ii | 0.86 | 2.59 | 3.364 (2) | 150 |
| C8—H8A···O1 | 0.93 | 2.54 | 3.293 (3) | 138 |
| C11—H11A···O1 | 0.96 | 2.34 | 2.767 (3) | 106 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.86 | 1.96 | 2.795 (3) | 162 |
| N4—H4 | 0.86 | 2.35 | 3.101 (3) | 146 |
| N4—H4 | 0.86 | 2.59 | 3.364 (2) | 150 |
| C8—H8 | 0.93 | 2.54 | 3.293 (3) | 138 |
Symmetry codes: (i) ; (ii) .