| Literature DB >> 21579826 |
N Dai, S F Jenkinson, G W J Fleet, D J Watkin.
Abstract
X-ray crystallography unequivocally confirmed the stereochemistry of the 2-C-methyl group in the title mol-ecule, C(10)H(16)O(6), in which the 1,5-lactone ring exists in a boat conformation. The use of d-galactose in the synthesis determined the absolute stereochemistry. The crystal exists as O-H⋯O hydrogen-bonded layers in the ab plane, with each mol-ecule acting as a donor and acceptor for two hydrogen bonds.Entities:
Year: 2010 PMID: 21579826 PMCID: PMC2979786 DOI: 10.1107/S1600536810001613
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H16O6 | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 1236 reflections |
| θ = 5–27° | |
| µ = 0.12 mm−1 | |
| β = 105.0854 (14)° | Plate, colourless |
| 0.50 × 0.40 × 0.10 mm | |
| Nonius KappaCCD diffractometer | 1229 reflections with |
| graphite | |
| ω scans | θmax = 27.5°, θmin = 5.2° |
| Absorption correction: multi-scan ( | |
| 5558 measured reflections | |
| 1314 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| Method = Modified Sheldrick
| |
| (Δ/σ)max = 0.0002 | |
| 1313 reflections | Δρmax = 0.22 e Å−3 |
| 145 parameters | Δρmin = −0.18 e Å−3 |
| 1 restraint |
| O1 | 0.1833 (2) | 0.44365 (15) | 0.34373 (17) | 0.0239 | |
| C2 | 0.2057 (3) | 0.50024 (18) | 0.1948 (2) | 0.0213 | |
| C3 | 0.3440 (3) | 0.61260 (18) | 0.2310 (2) | 0.0182 | |
| O4 | 0.5789 (2) | 0.57762 (14) | 0.31079 (16) | 0.0207 | |
| C5 | 0.7424 (3) | 0.65953 (18) | 0.3392 (2) | 0.0190 | |
| O6 | 0.9366 (2) | 0.63080 (16) | 0.41067 (17) | 0.0258 | |
| C7 | 0.6739 (3) | 0.78590 (18) | 0.2822 (2) | 0.0185 | |
| O8 | 0.5348 (2) | 0.82928 (15) | 0.38453 (17) | 0.0224 | |
| C9 | 0.8833 (3) | 0.86206 (19) | 0.2930 (3) | 0.0236 | |
| C10 | 0.5160 (3) | 0.78355 (18) | 0.1047 (2) | 0.0193 | |
| C11 | 0.3342 (3) | 0.68457 (18) | 0.0755 (2) | 0.0190 | |
| O12 | 0.3897 (2) | 0.61111 (14) | −0.04874 (16) | 0.0232 | |
| C13 | 0.5062 (3) | 0.6857 (2) | −0.1390 (2) | 0.0225 | |
| O14 | 0.6490 (2) | 0.75665 (14) | −0.00941 (15) | 0.0220 | |
| C15 | 0.3374 (4) | 0.7604 (2) | −0.2640 (2) | 0.0300 | |
| C16 | 0.6590 (4) | 0.6125 (2) | −0.2164 (3) | 0.0307 | |
| H21 | 0.0514 | 0.5221 | 0.1280 | 0.0253* | |
| H22 | 0.2831 | 0.4457 | 0.1327 | 0.0254* | |
| H31 | 0.2876 | 0.6635 | 0.3096 | 0.0192* | |
| H91 | 0.8339 | 0.9420 | 0.2601 | 0.0333* | |
| H93 | 0.9791 | 0.8665 | 0.4043 | 0.0339* | |
| H92 | 0.9711 | 0.8323 | 0.2182 | 0.0336* | |
| H101 | 0.4445 | 0.8626 | 0.0784 | 0.0218* | |
| H111 | 0.1751 | 0.7172 | 0.0354 | 0.0205* | |
| H152 | 0.4259 | 0.8092 | −0.3237 | 0.0421* | |
| H151 | 0.2464 | 0.8116 | −0.2113 | 0.0424* | |
| H153 | 0.2412 | 0.7087 | −0.3440 | 0.0423* | |
| H161 | 0.7445 | 0.6676 | −0.2693 | 0.0459* | |
| H163 | 0.7596 | 0.5680 | −0.1332 | 0.0464* | |
| H162 | 0.5654 | 0.5645 | −0.3003 | 0.0462* | |
| H81 | 0.6206 | 0.8478 | 0.4729 | 0.0319* | |
| H11 | 0.0902 | 0.4790 | 0.3908 | 0.0358* |
| O1 | 0.0268 (7) | 0.0221 (7) | 0.0249 (7) | 0.0017 (6) | 0.0104 (6) | 0.0072 (6) |
| C2 | 0.0241 (9) | 0.0199 (9) | 0.0194 (9) | −0.0019 (8) | 0.0050 (7) | 0.0033 (7) |
| C3 | 0.0163 (8) | 0.0196 (9) | 0.0185 (8) | 0.0022 (7) | 0.0043 (7) | 0.0024 (7) |
| O4 | 0.0184 (6) | 0.0193 (6) | 0.0232 (7) | 0.0023 (5) | 0.0035 (5) | 0.0035 (5) |
| C5 | 0.0203 (9) | 0.0226 (10) | 0.0148 (8) | 0.0012 (7) | 0.0063 (7) | −0.0010 (7) |
| O6 | 0.0196 (6) | 0.0291 (7) | 0.0272 (7) | 0.0038 (6) | 0.0031 (5) | 0.0015 (6) |
| C7 | 0.0194 (8) | 0.0196 (9) | 0.0170 (8) | 0.0014 (7) | 0.0057 (7) | −0.0032 (7) |
| O8 | 0.0222 (6) | 0.0250 (7) | 0.0207 (6) | 0.0006 (6) | 0.0068 (5) | −0.0069 (5) |
| C9 | 0.0227 (9) | 0.0232 (10) | 0.0249 (10) | −0.0026 (8) | 0.0063 (8) | −0.0035 (8) |
| C10 | 0.0235 (9) | 0.0176 (9) | 0.0171 (8) | 0.0001 (8) | 0.0058 (7) | 0.0002 (7) |
| C11 | 0.0214 (9) | 0.0181 (9) | 0.0176 (8) | −0.0007 (7) | 0.0051 (7) | −0.0003 (7) |
| O12 | 0.0324 (7) | 0.0206 (7) | 0.0185 (6) | −0.0065 (6) | 0.0100 (6) | −0.0021 (5) |
| C13 | 0.0308 (10) | 0.0228 (9) | 0.0144 (8) | −0.0088 (8) | 0.0070 (7) | −0.0017 (7) |
| O14 | 0.0252 (7) | 0.0249 (7) | 0.0173 (6) | −0.0066 (6) | 0.0082 (5) | −0.0036 (5) |
| C15 | 0.0354 (11) | 0.0336 (12) | 0.0187 (9) | −0.0047 (9) | 0.0028 (8) | 0.0035 (8) |
| C16 | 0.0400 (11) | 0.0315 (11) | 0.0239 (10) | −0.0037 (9) | 0.0140 (9) | −0.0059 (9) |
| O1—C2 | 1.430 (2) | C9—H92 | 0.976 |
| O1—H11 | 0.864 | C10—C11 | 1.548 (3) |
| C2—C3 | 1.513 (3) | C10—O14 | 1.426 (2) |
| C2—H21 | 0.985 | C10—H101 | 0.996 |
| C2—H22 | 0.997 | C11—O12 | 1.432 (2) |
| C3—O4 | 1.459 (2) | C11—H111 | 1.005 |
| C3—C11 | 1.516 (3) | O12—C13 | 1.432 (2) |
| C3—H31 | 0.995 | C13—O14 | 1.439 (2) |
| O4—C5 | 1.334 (2) | C13—C15 | 1.513 (3) |
| C5—O6 | 1.216 (2) | C13—C16 | 1.506 (3) |
| C5—C7 | 1.534 (3) | C15—H152 | 0.990 |
| C7—O8 | 1.430 (2) | C15—H151 | 0.979 |
| C7—C9 | 1.519 (3) | C15—H153 | 0.961 |
| C7—C10 | 1.533 (3) | C16—H161 | 0.985 |
| O8—H81 | 0.808 | C16—H163 | 0.940 |
| C9—H91 | 0.973 | C16—H162 | 0.947 |
| C9—H93 | 0.956 | ||
| C2—O1—H11 | 113.6 | C7—C10—O14 | 108.81 (14) |
| O1—C2—C3 | 112.29 (15) | C11—C10—O14 | 103.99 (14) |
| O1—C2—H21 | 108.0 | C7—C10—H101 | 108.8 |
| C3—C2—H21 | 107.1 | C11—C10—H101 | 111.7 |
| O1—C2—H22 | 109.3 | O14—C10—H101 | 109.7 |
| C3—C2—H22 | 108.4 | C10—C11—C3 | 112.96 (15) |
| H21—C2—H22 | 111.8 | C10—C11—O12 | 104.22 (14) |
| C2—C3—O4 | 106.51 (15) | C3—C11—O12 | 109.48 (15) |
| C2—C3—C11 | 112.89 (15) | C10—C11—H111 | 111.4 |
| O4—C3—C11 | 110.51 (14) | C3—C11—H111 | 107.6 |
| C2—C3—H31 | 110.7 | O12—C11—H111 | 111.2 |
| O4—C3—H31 | 108.7 | C11—O12—C13 | 105.74 (14) |
| C11—C3—H31 | 107.5 | O12—C13—O14 | 102.88 (13) |
| C3—O4—C5 | 118.76 (15) | O12—C13—C15 | 110.69 (16) |
| O4—C5—O6 | 118.55 (17) | O14—C13—C15 | 111.39 (17) |
| O4—C5—C7 | 118.00 (15) | O12—C13—C16 | 109.71 (17) |
| O6—C5—C7 | 123.44 (17) | O14—C13—C16 | 108.15 (17) |
| C5—C7—O8 | 107.07 (14) | C15—C13—C16 | 113.47 (16) |
| C5—C7—C9 | 111.12 (15) | C13—O14—C10 | 106.42 (14) |
| O8—C7—C9 | 112.38 (15) | C13—C15—H152 | 107.5 |
| C5—C7—C10 | 109.30 (14) | C13—C15—H151 | 112.7 |
| O8—C7—C10 | 105.05 (14) | H152—C15—H151 | 109.4 |
| C9—C7—C10 | 111.64 (15) | C13—C15—H153 | 108.1 |
| C7—O8—H81 | 106.8 | H152—C15—H153 | 107.9 |
| C7—C9—H91 | 108.9 | H151—C15—H153 | 111.2 |
| C7—C9—H93 | 112.0 | C13—C16—H161 | 106.9 |
| H91—C9—H93 | 106.6 | C13—C16—H163 | 109.6 |
| C7—C9—H92 | 110.5 | H161—C16—H163 | 110.7 |
| H91—C9—H92 | 108.9 | C13—C16—H162 | 108.3 |
| H93—C9—H92 | 109.8 | H161—C16—H162 | 108.8 |
| C7—C10—C11 | 113.78 (14) | H163—C16—H162 | 112.3 |
| H··· | ||||
| C2—H22···O14i | 1.00 | 2.46 | 3.391 (3) | 155 |
| C3—H31···O6ii | 1.00 | 2.51 | 3.204 (3) | 127 |
| C15—H153···O6iii | 0.96 | 2.52 | 3.454 (3) | 163 |
| O8—H81···O1iv | 0.81 | 1.99 | 2.771 (3) | 162 |
| O1—H11···O6ii | 0.86 | 1.99 | 2.737 (3) | 145 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O8—H81⋯O1i | 0.81 | 1.99 | 2.771 (3) | 162 |
| O1—H11⋯O6ii | 0.86 | 1.99 | 2.737 (3) | 145 |
Symmetry codes: (i) ; (ii) .