Literature DB >> 21579826

3,4-O-Isopropyl-idene-2-C-methyl-d-galactonolactone.

N Dai, S F Jenkinson, G W J Fleet, D J Watkin.   

Abstract

X-ray crystallography unequivocally confirmed the stereochemistry of the 2-C-methyl group in the title mol-ecule, C(10)H(16)O(6), in which the 1,5-lactone ring exists in a boat conformation. The use of d-galactose in the synthesis determined the absolute stereochemistry. The crystal exists as O-H⋯O hydrogen-bonded layers in the ab plane, with each mol-ecule acting as a donor and acceptor for two hydrogen bonds.

Entities:  

Year:  2010        PMID: 21579826      PMCID: PMC2979786          DOI: 10.1107/S1600536810001613

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature on branched sugars, see: Booth et al. (2008 ▶, 2009 ▶); da Cruz et al. (2008 ▶); Hotchkiss et al. (2006 ▶, 2007 ▶); Jenkinson et al. (2007 ▶); Jones et al. (2007 ▶, 2008 ▶); Rao et al. (2008 ▶). For the conformations of related 1,5-lactones, see: Baird et al. (1987 ▶); Booth et al. (2007a ▶,b ▶); Bruce et al. (1990 ▶); Punzo et al. (2005 ▶, 2006 ▶).

Experimental

Crystal data

C10H16O6 M = 232.23 Monoclinic, a = 6.0553 (2) Å b = 11.3612 (4) Å c = 8.2946 (3) Å β = 105.0854 (14)° V = 550.97 (3) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 150 K 0.50 × 0.40 × 0.10 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997 ▶) T min = 0.91, T max = 0.99 5558 measured reflections 1314 independent reflections 1229 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.068 S = 0.98 1313 reflections 145 parameters 1 restraint H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.18 e Å−3 Data collection: COLLECT (Nonius, 2001 ▶); cell refinement: DENZO/SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO/SCALEPACK; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: CAMERON (Watkin et al., 1996 ▶); software used to prepare material for publication: CRYSTALS. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810001613/lh2976sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810001613/lh2976Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H16O6F(000) = 248
Mr = 232.23Dx = 1.400 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1236 reflections
a = 6.0553 (2) Åθ = 5–27°
b = 11.3612 (4) ŵ = 0.12 mm1
c = 8.2946 (3) ÅT = 150 K
β = 105.0854 (14)°Plate, colourless
V = 550.97 (3) Å30.50 × 0.40 × 0.10 mm
Z = 2
Nonius KappaCCD diffractometer1229 reflections with I > 2σ(I)
graphiteRint = 0.028
ω scansθmax = 27.5°, θmin = 5.2°
Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997)h = −7→7
Tmin = 0.91, Tmax = 0.99k = −14→14
5558 measured reflectionsl = −10→10
1314 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H-atom parameters constrained
wR(F2) = 0.068 Method = Modified Sheldrick w = 1/[σ2(F2) + (0.03P)2 + 0.19P], where P = [max(Fo2,0) + 2Fc2]/3
S = 0.98(Δ/σ)max = 0.0002
1313 reflectionsΔρmax = 0.22 e Å3
145 parametersΔρmin = −0.18 e Å3
1 restraint
xyzUiso*/Ueq
O10.1833 (2)0.44365 (15)0.34373 (17)0.0239
C20.2057 (3)0.50024 (18)0.1948 (2)0.0213
C30.3440 (3)0.61260 (18)0.2310 (2)0.0182
O40.5789 (2)0.57762 (14)0.31079 (16)0.0207
C50.7424 (3)0.65953 (18)0.3392 (2)0.0190
O60.9366 (2)0.63080 (16)0.41067 (17)0.0258
C70.6739 (3)0.78590 (18)0.2822 (2)0.0185
O80.5348 (2)0.82928 (15)0.38453 (17)0.0224
C90.8833 (3)0.86206 (19)0.2930 (3)0.0236
C100.5160 (3)0.78355 (18)0.1047 (2)0.0193
C110.3342 (3)0.68457 (18)0.0755 (2)0.0190
O120.3897 (2)0.61111 (14)−0.04874 (16)0.0232
C130.5062 (3)0.6857 (2)−0.1390 (2)0.0225
O140.6490 (2)0.75665 (14)−0.00941 (15)0.0220
C150.3374 (4)0.7604 (2)−0.2640 (2)0.0300
C160.6590 (4)0.6125 (2)−0.2164 (3)0.0307
H210.05140.52210.12800.0253*
H220.28310.44570.13270.0254*
H310.28760.66350.30960.0192*
H910.83390.94200.26010.0333*
H930.97910.86650.40430.0339*
H920.97110.83230.21820.0336*
H1010.44450.86260.07840.0218*
H1110.17510.71720.03540.0205*
H1520.42590.8092−0.32370.0421*
H1510.24640.8116−0.21130.0424*
H1530.24120.7087−0.34400.0423*
H1610.74450.6676−0.26930.0459*
H1630.75960.5680−0.13320.0464*
H1620.56540.5645−0.30030.0462*
H810.62060.84780.47290.0319*
H110.09020.47900.39080.0358*
U11U22U33U12U13U23
O10.0268 (7)0.0221 (7)0.0249 (7)0.0017 (6)0.0104 (6)0.0072 (6)
C20.0241 (9)0.0199 (9)0.0194 (9)−0.0019 (8)0.0050 (7)0.0033 (7)
C30.0163 (8)0.0196 (9)0.0185 (8)0.0022 (7)0.0043 (7)0.0024 (7)
O40.0184 (6)0.0193 (6)0.0232 (7)0.0023 (5)0.0035 (5)0.0035 (5)
C50.0203 (9)0.0226 (10)0.0148 (8)0.0012 (7)0.0063 (7)−0.0010 (7)
O60.0196 (6)0.0291 (7)0.0272 (7)0.0038 (6)0.0031 (5)0.0015 (6)
C70.0194 (8)0.0196 (9)0.0170 (8)0.0014 (7)0.0057 (7)−0.0032 (7)
O80.0222 (6)0.0250 (7)0.0207 (6)0.0006 (6)0.0068 (5)−0.0069 (5)
C90.0227 (9)0.0232 (10)0.0249 (10)−0.0026 (8)0.0063 (8)−0.0035 (8)
C100.0235 (9)0.0176 (9)0.0171 (8)0.0001 (8)0.0058 (7)0.0002 (7)
C110.0214 (9)0.0181 (9)0.0176 (8)−0.0007 (7)0.0051 (7)−0.0003 (7)
O120.0324 (7)0.0206 (7)0.0185 (6)−0.0065 (6)0.0100 (6)−0.0021 (5)
C130.0308 (10)0.0228 (9)0.0144 (8)−0.0088 (8)0.0070 (7)−0.0017 (7)
O140.0252 (7)0.0249 (7)0.0173 (6)−0.0066 (6)0.0082 (5)−0.0036 (5)
C150.0354 (11)0.0336 (12)0.0187 (9)−0.0047 (9)0.0028 (8)0.0035 (8)
C160.0400 (11)0.0315 (11)0.0239 (10)−0.0037 (9)0.0140 (9)−0.0059 (9)
O1—C21.430 (2)C9—H920.976
O1—H110.864C10—C111.548 (3)
C2—C31.513 (3)C10—O141.426 (2)
C2—H210.985C10—H1010.996
C2—H220.997C11—O121.432 (2)
C3—O41.459 (2)C11—H1111.005
C3—C111.516 (3)O12—C131.432 (2)
C3—H310.995C13—O141.439 (2)
O4—C51.334 (2)C13—C151.513 (3)
C5—O61.216 (2)C13—C161.506 (3)
C5—C71.534 (3)C15—H1520.990
C7—O81.430 (2)C15—H1510.979
C7—C91.519 (3)C15—H1530.961
C7—C101.533 (3)C16—H1610.985
O8—H810.808C16—H1630.940
C9—H910.973C16—H1620.947
C9—H930.956
C2—O1—H11113.6C7—C10—O14108.81 (14)
O1—C2—C3112.29 (15)C11—C10—O14103.99 (14)
O1—C2—H21108.0C7—C10—H101108.8
C3—C2—H21107.1C11—C10—H101111.7
O1—C2—H22109.3O14—C10—H101109.7
C3—C2—H22108.4C10—C11—C3112.96 (15)
H21—C2—H22111.8C10—C11—O12104.22 (14)
C2—C3—O4106.51 (15)C3—C11—O12109.48 (15)
C2—C3—C11112.89 (15)C10—C11—H111111.4
O4—C3—C11110.51 (14)C3—C11—H111107.6
C2—C3—H31110.7O12—C11—H111111.2
O4—C3—H31108.7C11—O12—C13105.74 (14)
C11—C3—H31107.5O12—C13—O14102.88 (13)
C3—O4—C5118.76 (15)O12—C13—C15110.69 (16)
O4—C5—O6118.55 (17)O14—C13—C15111.39 (17)
O4—C5—C7118.00 (15)O12—C13—C16109.71 (17)
O6—C5—C7123.44 (17)O14—C13—C16108.15 (17)
C5—C7—O8107.07 (14)C15—C13—C16113.47 (16)
C5—C7—C9111.12 (15)C13—O14—C10106.42 (14)
O8—C7—C9112.38 (15)C13—C15—H152107.5
C5—C7—C10109.30 (14)C13—C15—H151112.7
O8—C7—C10105.05 (14)H152—C15—H151109.4
C9—C7—C10111.64 (15)C13—C15—H153108.1
C7—O8—H81106.8H152—C15—H153107.9
C7—C9—H91108.9H151—C15—H153111.2
C7—C9—H93112.0C13—C16—H161106.9
H91—C9—H93106.6C13—C16—H163109.6
C7—C9—H92110.5H161—C16—H163110.7
H91—C9—H92108.9C13—C16—H162108.3
H93—C9—H92109.8H161—C16—H162108.8
C7—C10—C11113.78 (14)H163—C16—H162112.3
D—H···AD—HH···AD···AD—H···A
C2—H22···O14i1.002.463.391 (3)155
C3—H31···O6ii1.002.513.204 (3)127
C15—H153···O6iii0.962.523.454 (3)163
O8—H81···O1iv0.811.992.771 (3)162
O1—H11···O6ii0.861.992.737 (3)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O8—H81⋯O1i0.811.992.771 (3)162
O1—H11⋯O6ii0.861.992.737 (3)145

Symmetry codes: (i) ; (ii) .

  1 in total

1.  6-De-oxy-3,4-O-isopropyl-idene-2-C-methyl-l-galactono-1,5-lactone.

Authors:  Sarah F Jenkinson; Loren L Parry; Francis X Wilson; George W J Fleet; David J Watkin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-31
  1 in total

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