Literature DB >> 21579813

2,2'-(Propane-2,2-di-yl)bis-(1H-pyrrole).

Guillaume Journot, Reinhard Neier, Helen Stoeckli-Evans.   

Abstract

The title compound, C(11)H(14)N(2), crystallized with two independent mol-ecules (A and B) in the asymmetric unit. The two mol-ecules differ only slightly, with the pyrrole rings being inclined to one another at a dihedral angle of 87.67 (8)° in mol-ecule A and 88.09 (7)° in mol-ecule B. In the crystal, there are no classical hydrogen bonds, but the two pyrrole NH groups of one mol-ecule are involved in N-H⋯π inter-actions with the pyrrole rings of the other mol-ecule. In this manner, a compact box-like arrangement of the two independent mol-ecules is formed.

Entities:  

Year:  2010        PMID: 21579813      PMCID: PMC2979882          DOI: 10.1107/S1600536809054701

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For substituted calix[4]pyrroles, see: Gale et al. (1998 ▶); Sessler & Davis (2001 ▶); Sessler et al. (2003 ▶). For the synthesis and crystal structure of meso-diethyl-bis­(2-pyrrol­yl)methane, see: Sobral et al. (2003 ▶). For inter­molecular inter­actions involving aromatic rings in biological systems, see: Meyer et al. (2003 ▶). For a spectroscopic analysis of N—H⋯π inter­actions in pyrroles, see: Dauster et al. (2008 ▶).

Experimental

Crystal data

C11H14N2 M = 174.24 Triclinic, a = 8.4554 (8) Å b = 9.2001 (8) Å c = 13.2274 (11) Å α = 99.802 (7)° β = 95.321 (7)° γ = 97.328 (7)° V = 998.74 (15) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 173 K 0.40 × 0.34 × 0.28 mm

Data collection

Stoe IPDS-2 diffractometer 15270 measured reflections 5385 independent reflections 3816 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.106 S = 1.02 5385 reflections 255 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.21 e Å−3 Data collection: X-AREA (Stoe & Cie, 2009 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2009 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809054701/is2506sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809054701/is2506Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H14N2Z = 4
Mr = 174.24F(000) = 376
Triclinic, P1Dx = 1.159 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.4554 (8) ÅCell parameters from 10442 reflections
b = 9.2001 (8) Åθ = 1.6–29.5°
c = 13.2274 (11) ŵ = 0.07 mm1
α = 99.802 (7)°T = 173 K
β = 95.321 (7)°Block, colourless
γ = 97.328 (7)°0.40 × 0.34 × 0.28 mm
V = 998.74 (15) Å3
Stoe IPDS-2 diffractometer3816 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.046
graphiteθmax = 29.2°, θmin = 1.6°
φ and ω scansh = −11→11
15270 measured reflectionsk = −12→12
5385 independent reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0549P)2 + 0.0012P] where P = (Fo2 + 2Fc2)/3
5385 reflections(Δ/σ)max < 0.001
255 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.12135 (12)0.25140 (11)0.31284 (8)0.0249 (3)
N20.40689 (12)0.01811 (11)0.24234 (8)0.0252 (3)
C10.13663 (14)0.38021 (14)0.38492 (10)0.0312 (4)
C20.17507 (15)0.34619 (16)0.47962 (10)0.0348 (4)
C30.18351 (15)0.19174 (16)0.46471 (9)0.0311 (4)
C40.14934 (13)0.13454 (13)0.36055 (9)0.0234 (3)
C50.24635 (14)−0.03734 (12)0.22005 (9)0.0226 (3)
C60.22365 (16)−0.10944 (14)0.11865 (9)0.0305 (4)
C70.37369 (18)−0.09563 (15)0.07953 (10)0.0358 (4)
C80.48462 (16)−0.01599 (14)0.15732 (10)0.0314 (4)
C90.13255 (15)−0.02364 (14)0.30167 (9)0.0277 (3)
C10−0.04155 (17)−0.07156 (17)0.24923 (13)0.0470 (5)
C110.1699 (2)−0.12827 (17)0.37732 (13)0.0479 (5)
N210.51399 (12)0.37264 (11)0.36601 (7)0.0232 (3)
N220.32603 (13)0.28069 (11)0.11006 (7)0.0253 (3)
C210.59997 (14)0.28840 (14)0.42014 (9)0.0264 (3)
C220.73108 (15)0.26137 (15)0.37047 (10)0.0308 (4)
C230.72320 (14)0.33192 (14)0.28313 (9)0.0281 (4)
C240.58798 (13)0.40056 (13)0.28184 (8)0.0225 (3)
C250.35755 (14)0.42785 (13)0.15697 (8)0.0229 (3)
C260.21946 (16)0.48825 (14)0.13876 (9)0.0298 (4)
C270.10133 (16)0.37382 (15)0.07998 (10)0.0340 (4)
C280.17016 (15)0.24721 (14)0.06366 (9)0.0307 (3)
C290.52308 (14)0.49773 (13)0.21071 (9)0.0251 (3)
C300.51173 (19)0.65164 (14)0.27414 (11)0.0381 (4)
C310.63878 (17)0.51784 (17)0.12898 (10)0.0381 (4)
H1N0.1032 (19)0.2477 (18)0.2475 (13)0.040 (4)*
H2N0.4531 (19)0.0726 (18)0.2990 (12)0.040 (4)*
H10.122800.476200.371200.0370*
H20.192900.413800.543800.0420*
H30.208400.136900.517300.0370*
H60.12470−0.159600.081500.0370*
H70.39370−0.134700.011400.0430*
H80.595800.010800.153100.0380*
H10A−0.11590−0.063400.301800.0710*
H10B−0.05400−0.175100.212600.0710*
H10C−0.06530−0.006600.200000.0710*
H11A0.09550−0.121800.430000.0720*
H11B0.28040−0.098500.410700.0720*
H11C0.15750−0.231000.339400.0720*
H21N0.4231 (19)0.4002 (16)0.3827 (11)0.031 (4)*
H22N0.3894 (19)0.2146 (18)0.1123 (11)0.039 (4)*
H210.573300.254700.481300.0320*
H220.812100.205900.390700.0370*
H230.798400.331800.234000.0340*
H260.205400.588900.161500.0360*
H27−0.005700.383800.056500.0410*
H280.119500.152500.026700.0370*
H30A0.471700.715200.228100.0570*
H30B0.618300.697700.308700.0570*
H30C0.437900.640100.326100.0570*
H31A0.643700.420700.086400.0570*
H31B0.746200.560900.163600.0570*
H31C0.600000.584700.085100.0570*
U11U22U33U12U13U23
N10.0216 (5)0.0271 (5)0.0262 (5)0.0050 (4)0.0023 (4)0.0045 (4)
N20.0249 (5)0.0242 (5)0.0266 (5)0.0033 (4)0.0039 (4)0.0051 (4)
C10.0204 (6)0.0265 (6)0.0442 (7)0.0037 (5)0.0068 (5)−0.0019 (5)
C20.0263 (6)0.0400 (7)0.0321 (6)−0.0005 (5)0.0080 (5)−0.0090 (5)
C30.0269 (6)0.0430 (8)0.0231 (6)0.0032 (5)0.0050 (4)0.0058 (5)
C40.0187 (5)0.0285 (6)0.0244 (5)0.0045 (4)0.0055 (4)0.0068 (4)
C50.0244 (5)0.0184 (5)0.0258 (5)0.0029 (4)0.0035 (4)0.0059 (4)
C60.0395 (7)0.0234 (6)0.0267 (6)0.0030 (5)0.0002 (5)0.0024 (5)
C70.0553 (9)0.0276 (7)0.0283 (6)0.0115 (6)0.0169 (6)0.0051 (5)
C80.0332 (7)0.0269 (6)0.0402 (7)0.0104 (5)0.0174 (5)0.0116 (5)
C90.0270 (6)0.0264 (6)0.0312 (6)0.0027 (5)0.0094 (5)0.0071 (5)
C100.0282 (7)0.0395 (8)0.0639 (10)−0.0074 (6)0.0111 (6)−0.0107 (7)
C110.0672 (11)0.0390 (8)0.0518 (9)0.0195 (7)0.0325 (8)0.0256 (7)
N210.0186 (5)0.0288 (5)0.0227 (5)0.0038 (4)0.0016 (4)0.0060 (4)
N220.0289 (5)0.0225 (5)0.0239 (5)0.0058 (4)−0.0029 (4)0.0043 (4)
C210.0248 (6)0.0302 (6)0.0236 (5)0.0013 (5)−0.0040 (4)0.0087 (5)
C220.0238 (6)0.0332 (7)0.0360 (7)0.0079 (5)−0.0029 (5)0.0085 (5)
C230.0211 (6)0.0336 (7)0.0292 (6)0.0037 (5)0.0037 (4)0.0047 (5)
C240.0211 (5)0.0237 (6)0.0209 (5)0.0000 (4)−0.0003 (4)0.0034 (4)
C250.0283 (6)0.0221 (6)0.0186 (5)0.0039 (4)0.0003 (4)0.0055 (4)
C260.0349 (7)0.0250 (6)0.0308 (6)0.0094 (5)−0.0012 (5)0.0074 (5)
C270.0289 (6)0.0382 (7)0.0347 (7)0.0056 (5)−0.0074 (5)0.0115 (6)
C280.0317 (6)0.0303 (6)0.0267 (6)−0.0010 (5)−0.0080 (5)0.0063 (5)
C290.0275 (6)0.0242 (6)0.0223 (5)0.0002 (4)−0.0014 (4)0.0057 (4)
C300.0508 (8)0.0234 (6)0.0354 (7)0.0030 (6)−0.0115 (6)0.0029 (5)
C310.0351 (7)0.0476 (8)0.0315 (6)−0.0054 (6)0.0023 (5)0.0163 (6)
N1—C11.3724 (17)C10—H10C0.9800
N1—C41.3705 (16)C10—H10B0.9800
N2—C51.3739 (16)C10—H10A0.9800
N2—C81.3655 (17)C11—H11B0.9800
N1—H1N0.858 (17)C11—H11A0.9800
N2—H2N0.856 (16)C11—H11C0.9800
N21—C211.3704 (16)C21—C221.3683 (18)
N21—C241.3720 (14)C22—C231.4186 (18)
N22—C251.3712 (15)C23—C241.3750 (17)
N22—C281.3750 (17)C24—C291.5170 (16)
N21—H21N0.875 (16)C25—C291.5192 (17)
N22—H22N0.863 (16)C25—C261.3744 (18)
C1—C21.3626 (19)C26—C271.4211 (19)
C2—C31.413 (2)C27—C281.3612 (19)
C3—C41.3781 (17)C29—C311.5421 (18)
C4—C91.5118 (17)C29—C301.5373 (18)
C5—C61.3757 (17)C21—H210.9500
C5—C91.5115 (17)C22—H220.9500
C6—C71.413 (2)C23—H230.9500
C7—C81.3654 (19)C26—H260.9500
C9—C111.541 (2)C27—H270.9500
C9—C101.544 (2)C28—H280.9500
C1—H10.9500C30—H30A0.9800
C2—H20.9500C30—H30B0.9800
C3—H30.9500C30—H30C0.9800
C6—H60.9500C31—H31A0.9800
C7—H70.9500C31—H31B0.9800
C8—H80.9500C31—H31C0.9800
C1—N1—C4109.93 (10)C9—C11—H11C109.00
C5—N2—C8110.24 (10)H11A—C11—H11B109.00
C1—N1—H1N123.9 (11)H11A—C11—H11C109.00
C4—N1—H1N126.1 (11)H11B—C11—H11C109.00
C5—N2—H2N126.5 (11)C9—C11—H11B109.00
C8—N2—H2N123.1 (11)C9—C11—H11A109.00
C21—N21—C24110.16 (10)N21—C21—C22107.86 (11)
C25—N22—C28110.04 (10)C21—C22—C23107.02 (11)
C21—N21—H21N123.5 (9)C22—C23—C24108.20 (11)
C24—N21—H21N126.3 (9)C23—C24—C29131.63 (10)
C28—N22—H22N123.0 (11)N21—C24—C23106.75 (10)
C25—N22—H22N126.8 (11)N21—C24—C29121.55 (10)
N1—C1—C2107.93 (12)N22—C25—C29121.59 (11)
C1—C2—C3107.31 (12)C26—C25—C29131.53 (11)
C2—C3—C4108.08 (11)N22—C25—C26106.79 (10)
C3—C4—C9130.99 (12)C25—C26—C27108.09 (11)
N1—C4—C9122.17 (10)C26—C27—C28107.19 (12)
N1—C4—C3106.75 (11)N22—C28—C27107.89 (11)
N2—C5—C6106.70 (11)C25—C29—C31109.40 (10)
C6—C5—C9131.40 (11)C30—C29—C31108.82 (11)
N2—C5—C9121.74 (10)C25—C29—C30109.04 (10)
C5—C6—C7107.85 (11)C24—C29—C25110.94 (10)
C6—C7—C8107.59 (12)C24—C29—C30109.35 (10)
N2—C8—C7107.61 (12)C24—C29—C31109.26 (10)
C4—C9—C5111.44 (10)N21—C21—H21126.00
C10—C9—C11109.12 (12)C22—C21—H21126.00
C5—C9—C10109.09 (10)C21—C22—H22126.00
C5—C9—C11108.66 (11)C23—C22—H22127.00
C4—C9—C10109.10 (11)C22—C23—H23126.00
C4—C9—C11109.41 (10)C24—C23—H23126.00
N1—C1—H1126.00C25—C26—H26126.00
C2—C1—H1126.00C27—C26—H26126.00
C3—C2—H2126.00C26—C27—H27126.00
C1—C2—H2126.00C28—C27—H27126.00
C4—C3—H3126.00N22—C28—H28126.00
C2—C3—H3126.00C27—C28—H28126.00
C7—C6—H6126.00C29—C30—H30A109.00
C5—C6—H6126.00C29—C30—H30B109.00
C6—C7—H7126.00C29—C30—H30C109.00
C8—C7—H7126.00H30A—C30—H30B110.00
N2—C8—H8126.00H30A—C30—H30C109.00
C7—C8—H8126.00H30B—C30—H30C109.00
C9—C10—H10A109.00C29—C31—H31A109.00
C9—C10—H10B109.00C29—C31—H31B109.00
C9—C10—H10C109.00C29—C31—H31C109.00
H10B—C10—H10C110.00H31A—C31—H31B109.00
H10A—C10—H10C109.00H31A—C31—H31C110.00
H10A—C10—H10B109.00H31B—C31—H31C109.00
C4—N1—C1—C20.14 (14)N2—C5—C9—C10170.37 (11)
C1—N1—C4—C3−0.25 (13)N2—C5—C9—C11−70.77 (14)
C1—N1—C4—C9176.69 (11)C6—C5—C9—C10−14.94 (19)
C8—N2—C5—C60.67 (14)C6—C5—C9—C11103.92 (15)
C8—N2—C5—C9176.51 (11)C5—C6—C7—C80.07 (16)
C5—N2—C8—C7−0.63 (14)C6—C7—C8—N20.34 (15)
C21—N21—C24—C29−177.09 (10)N21—C21—C22—C23−0.10 (15)
C24—N21—C21—C22−0.03 (13)C21—C22—C23—C240.19 (15)
C21—N21—C24—C230.15 (13)C22—C23—C24—N21−0.21 (14)
C28—N22—C25—C26−0.63 (13)C22—C23—C24—C29176.64 (12)
C28—N22—C25—C29−177.43 (10)N21—C24—C29—C25−63.67 (14)
C25—N22—C28—C270.54 (14)N21—C24—C29—C3056.63 (15)
N1—C1—C2—C30.02 (14)N21—C24—C29—C31175.64 (11)
C1—C2—C3—C4−0.17 (15)C23—C24—C29—C25119.88 (14)
C2—C3—C4—C9−176.31 (12)C23—C24—C29—C30−119.82 (14)
C2—C3—C4—N10.25 (14)C23—C24—C29—C31−0.82 (18)
N1—C4—C9—C560.57 (15)N22—C25—C26—C270.48 (13)
N1—C4—C9—C11−179.26 (11)C29—C25—C26—C27176.83 (12)
C3—C4—C9—C5−123.33 (14)N22—C25—C29—C24−47.82 (14)
N1—C4—C9—C10−59.95 (15)N22—C25—C29—C30−168.30 (10)
C3—C4—C9—C11−3.15 (19)N22—C25—C29—C3172.79 (14)
C3—C4—C9—C10116.16 (15)C26—C25—C29—C24136.28 (13)
N2—C5—C9—C449.85 (15)C26—C25—C29—C3015.80 (17)
C9—C5—C6—C7−175.73 (12)C26—C25—C29—C31−103.11 (15)
N2—C5—C6—C7−0.44 (14)C25—C26—C27—C28−0.16 (14)
C6—C5—C9—C4−135.46 (13)C26—C27—C28—N22−0.23 (14)
DHCentroidN—HH···CgD···CgN—H···Cg
N1H1NCg40.86 (2)2.534 (17)3.2190 (12)137.4 (14)
N2H2NCg30.86 (2)2.591 (17)3.2425 (12)133.7 (13)
N21H21NCg10.88 (2)2.523 (16)3.1925 (12)133.9 (12)
N22H22NCg20.86 (2)2.610 (17)3.2440 (12)131.3 (13)
Table 1

Geometry of N—H⋯π inter­actions (Å, °)

DHCentroidN—HH⋯CgDCgN—H⋯Cg
N1H1NCg40.86 (2)2.534 (17)3.2190 (12)137.4 (14)
N2H2NCg30.86 (2)2.591 (17)3.2425 (12)133.7 (13)
N21H21NCg10.88 (2)2.523 (16)3.1925 (12)133.9 (12)
N22H22NCg20.86 (2)2.610 (17)3.2440 (12)131.3 (13)

Cg1, Cg2, Cg3 and Cg4 are the centroids of the N1/C1–C4, N2/C5–C8, N21/C21—C24 and N22/C25–C28 rings, respectively.

  5 in total

Review 1.  Interactions with aromatic rings in chemical and biological recognition.

Authors:  Emmanuel A Meyer; Ronald K Castellano; François Diederich
Journal:  Angew Chem Int Ed Engl       Date:  2003-03-17       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  N-H...pi interactions in pyrroles: systematic trends from the vibrational spectroscopy of clusters.

Authors:  Ingo Dauster; Corey A Rice; Philipp Zielke; Martin A Suhm
Journal:  Phys Chem Chem Phys       Date:  2008-02-21       Impact factor: 3.676

Review 4.  Sapphyrins: versatile anion binding agents.

Authors:  J L Sessler; J M Davis
Journal:  Acc Chem Res       Date:  2001-12       Impact factor: 22.384

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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