Literature DB >> 21579810

2-Carb-oxy-1-(3-nitro-phen-yl)ethanaminium perchlorate.

Wen-Xian Liang1.   

Abstract

In the title compound, C(9)H(11)N(2)O(4) (+)·ClO(4) (-), the organic cations form centrosymmetric dimers via a pair of O-H⋯O hydrogen bonds between the carboxyl groups. In the crystal, N-H⋯O inter-actions between the protonated amine group and the perchlorate anions and the nitro group connect the components into a two-dimensional network parallel to (001).

Entities:  

Year:  2010        PMID: 21579810      PMCID: PMC2979896          DOI: 10.1107/S1600536809052167

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For methods of preparation of β-amino acids, see: Cohen et al. (2002 ▶); Qu et al. (2004 ▶).

Experimental

Crystal data

C9H11N2O4 +·ClO4 M = 310.65 Triclinic, a = 7.4737 (10) Å b = 7.7676 (8) Å c = 11.8234 (11) Å α = 94.973 (5)° β = 99.093 (4)° γ = 115.574 (9)° V = 602.04 (12) Å3 Z = 2 Mo Kα radiation μ = 0.36 mm−1 T = 93 K 0.45 × 0.30 × 0.15 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.882, T max = 0.950 6395 measured reflections 2737 independent reflections 1732 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.083 S = 1.08 2737 reflections 183 parameters H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.38 e Å−3 Data collection: CrystalClear (Rigaku 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: PRPKAPPA (Ferguson, 1999 ▶). Crystal structure: contains datablocks I, New_Global_Publ_Block. DOI: 10.1107/S1600536809052167/gk2243sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809052167/gk2243Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H11N2O4+·ClO4Z = 2
Mr = 310.65F(000) = 320
Triclinic, P1Dx = 1.713 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.4737 (10) ÅCell parameters from 1721 reflections
b = 7.7676 (8) Åθ = 3.1–27.5°
c = 11.8234 (11) ŵ = 0.36 mm1
α = 94.973 (5)°T = 93 K
β = 99.093 (4)°Prism, colorless
γ = 115.574 (9)°0.45 × 0.30 × 0.15 mm
V = 602.04 (12) Å3
Rigaku SCXmini diffractometer2737 independent reflections
Radiation source: fine-focus sealed tube1732 reflections with I > 2σ(I)
graphiteRint = 0.049
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 2.9°
ω and φ scanh = −9→9
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −10→10
Tmin = 0.882, Tmax = 0.950l = −15→15
6395 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.030H-atom parameters constrained
wR(F2) = 0.083w = 1/[σ2(Fo2) + (0.0372P)2 + 0.395P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max = 0.001
2737 reflectionsΔρmax = 0.41 e Å3
183 parametersΔρmin = −0.38 e Å3
0 restraintsExtinction correction: SHELXL
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0014 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.03107 (18)−0.28766 (17)0.32513 (10)0.0261 (3)
O20.04653 (17)−0.16514 (17)0.49951 (10)0.0222 (2)
O30.98215 (17)−0.04224 (17)0.14192 (9)0.0188 (2)
H31.0329−0.05300.08680.028*
O40.82886 (16)0.08503 (15)0.02079 (9)0.0166 (2)
N10.11075 (18)−0.15634 (18)0.40993 (11)0.0163 (3)
N20.74545 (19)0.36296 (18)0.15908 (10)0.0155 (2)
H2D0.87120.42420.20250.023*
H2B0.67910.43200.17120.023*
H2C0.75040.34870.08430.023*
C10.2944 (2)0.0167 (2)0.40370 (12)0.0136 (3)
C20.3868 (2)0.1673 (2)0.49778 (12)0.0142 (3)
H2A0.33090.16300.56300.017*
C30.5666 (2)0.3255 (2)0.49154 (12)0.0150 (3)
H3A0.63280.42840.55360.018*
C40.6474 (2)0.3303 (2)0.39298 (12)0.0146 (3)
H40.76810.43600.38990.018*
C50.5485 (2)0.1772 (2)0.29839 (12)0.0137 (3)
C60.3711 (2)0.0183 (2)0.30398 (12)0.0139 (3)
H60.3046−0.08530.24230.017*
C70.6363 (2)0.1664 (2)0.19179 (12)0.0142 (3)
H70.52420.08280.12640.017*
C80.7776 (2)0.0740 (2)0.21606 (12)0.0146 (3)
H8A0.88870.15650.28080.018*
H8B0.7035−0.04920.23990.018*
C90.8654 (2)0.0398 (2)0.11572 (12)0.0136 (3)
Cl10.33694 (5)0.50865 (5)0.14980 (3)0.01593 (11)
O50.18796 (17)0.43639 (18)0.21983 (10)0.0261 (3)
O70.31799 (18)0.35386 (17)0.06549 (11)0.0270 (3)
O80.3095 (2)0.6550 (2)0.09212 (10)0.0302 (3)
O60.53816 (16)0.59598 (16)0.22457 (10)0.0209 (2)
U11U22U33U12U13U23
O10.0238 (6)0.0184 (6)0.0237 (6)−0.0008 (5)0.0036 (5)0.0009 (5)
O20.0208 (5)0.0255 (6)0.0254 (6)0.0112 (5)0.0135 (5)0.0098 (5)
O30.0227 (5)0.0280 (6)0.0151 (5)0.0186 (5)0.0074 (4)0.0048 (4)
O40.0196 (5)0.0206 (5)0.0144 (5)0.0130 (4)0.0051 (4)0.0031 (4)
N10.0138 (6)0.0171 (6)0.0197 (6)0.0082 (5)0.0035 (5)0.0062 (5)
N20.0186 (6)0.0164 (6)0.0148 (5)0.0099 (5)0.0060 (5)0.0034 (5)
C10.0119 (6)0.0146 (7)0.0169 (6)0.0079 (5)0.0031 (5)0.0049 (5)
C20.0155 (6)0.0176 (7)0.0140 (6)0.0105 (6)0.0056 (5)0.0047 (5)
C30.0162 (6)0.0136 (7)0.0156 (6)0.0083 (5)0.0016 (5)−0.0001 (5)
C40.0121 (6)0.0124 (6)0.0193 (7)0.0050 (5)0.0045 (5)0.0032 (5)
C50.0153 (6)0.0153 (7)0.0145 (6)0.0098 (5)0.0054 (5)0.0032 (5)
C60.0148 (6)0.0140 (6)0.0145 (6)0.0086 (5)0.0017 (5)0.0012 (5)
C70.0144 (6)0.0135 (6)0.0146 (6)0.0061 (5)0.0047 (5)0.0007 (5)
C80.0167 (6)0.0153 (6)0.0148 (6)0.0084 (5)0.0073 (5)0.0039 (5)
C90.0122 (6)0.0119 (6)0.0157 (6)0.0045 (5)0.0041 (5)0.0010 (5)
Cl10.01637 (17)0.01607 (18)0.01561 (17)0.00828 (13)0.00303 (13)−0.00028 (13)
O50.0183 (5)0.0306 (6)0.0253 (6)0.0070 (5)0.0087 (5)−0.0011 (5)
O70.0272 (6)0.0203 (6)0.0294 (6)0.0086 (5)0.0082 (5)−0.0080 (5)
O80.0498 (8)0.0372 (7)0.0175 (5)0.0332 (6)0.0043 (5)0.0059 (5)
O60.0167 (5)0.0202 (5)0.0231 (5)0.0072 (4)0.0013 (4)0.0023 (4)
O1—N11.2288 (17)C3—H3A0.9300
O2—N11.2255 (17)C4—C51.400 (2)
O3—C91.3011 (18)C4—H40.9300
O3—H30.8200C5—C61.384 (2)
O4—C91.2296 (18)C5—C71.5217 (18)
N1—C11.4670 (18)C6—H60.9300
N2—C71.5075 (18)C7—C81.519 (2)
N2—H2D0.8900C7—H70.9800
N2—H2B0.8900C8—C91.5000 (18)
N2—H2C0.8900C8—H8A0.9700
C1—C21.384 (2)C8—H8B0.9700
C1—C61.3889 (19)Cl1—O71.4354 (11)
C2—C31.394 (2)Cl1—O51.4396 (12)
C2—H2A0.9300Cl1—O81.4455 (12)
C3—C41.391 (2)Cl1—O61.4486 (11)
C9—O3—H3109.5C5—C6—C1118.60 (13)
O2—N1—O1123.17 (13)C5—C6—H6120.7
O2—N1—C1118.90 (12)C1—C6—H6120.7
O1—N1—C1117.91 (12)N2—C7—C8111.06 (11)
C7—N2—H2D109.5N2—C7—C5111.99 (11)
C7—N2—H2B109.5C8—C7—C5108.58 (11)
H2D—N2—H2B109.5N2—C7—H7108.4
C7—N2—H2C109.5C8—C7—H7108.4
H2D—N2—H2C109.5C5—C7—H7108.4
H2B—N2—H2C109.5C9—C8—C7115.16 (12)
C2—C1—C6123.03 (13)C9—C8—H8A108.5
C2—C1—N1119.16 (12)C7—C8—H8A108.5
C6—C1—N1117.78 (13)C9—C8—H8B108.5
C1—C2—C3117.80 (13)C7—C8—H8B108.5
C1—C2—H2A121.1H8A—C8—H8B107.5
C3—C2—H2A121.1O4—C9—O3125.13 (13)
C4—C3—C2120.38 (13)O4—C9—C8122.98 (13)
C4—C3—H3A119.8O3—C9—C8111.90 (12)
C2—C3—H3A119.8O7—Cl1—O5110.51 (7)
C3—C4—C5120.49 (13)O7—Cl1—O8110.15 (7)
C3—C4—H4119.8O5—Cl1—O8109.25 (8)
C5—C4—H4119.8O7—Cl1—O6109.10 (7)
C6—C5—C4119.70 (13)O5—Cl1—O6109.02 (7)
C6—C5—C7116.93 (12)O8—Cl1—O6108.78 (8)
C4—C5—C7123.14 (12)
O2—N1—C1—C2−1.71 (19)C7—C5—C6—C1175.40 (12)
O1—N1—C1—C2179.73 (13)C2—C1—C6—C50.3 (2)
O2—N1—C1—C6176.20 (12)N1—C1—C6—C5−177.56 (12)
O1—N1—C1—C6−2.37 (19)C6—C5—C7—N2148.40 (12)
C6—C1—C2—C3−0.9 (2)C4—C5—C7—N2−37.23 (18)
N1—C1—C2—C3176.88 (12)C6—C5—C7—C8−88.61 (15)
C1—C2—C3—C40.5 (2)C4—C5—C7—C885.76 (16)
C2—C3—C4—C50.6 (2)N2—C7—C8—C9−60.66 (16)
C3—C4—C5—C6−1.2 (2)C5—C7—C8—C9175.79 (12)
C3—C4—C5—C7−175.45 (13)C7—C8—C9—O40.9 (2)
C4—C5—C6—C10.8 (2)C7—C8—C9—O3−179.00 (12)
D—H···AD—HH···AD···AD—H···A
C8—H8B···O6i0.972.463.3742 (19)157
C8—H8A···O2ii0.972.563.3053 (19)134
C6—H6···O8i0.932.593.4263 (19)151
C4—H4···O1iii0.932.483.3858 (19)163
O3—H3···O4iv0.821.822.6381 (14)172
N2—H2D···O5v0.892.303.0542 (17)142
N2—H2D···O1iii0.892.262.9200 (17)130
N2—H2C···O8vi0.892.062.9159 (17)162
N2—H2C···O40.892.452.9317 (16)114
N2—H2B···O70.892.573.1795 (18)126
N2—H2B···O60.892.092.9720 (17)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O4i0.821.822.6381 (14)172
N2—H2D⋯O5ii0.892.303.0542 (17)142
N2—H2D⋯O1iii0.892.262.9200 (17)130
N2—H2C⋯O8iv0.892.062.9159 (17)162
N2—H2C⋯O40.892.452.9317 (16)114
N2—H2B⋯O70.892.573.1795 (18)126
N2—H2B⋯O60.892.092.9720 (17)172

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Zhi-Rong Qu; Hong Zhao; Yi-Ping Wang; Xi-Sen Wang; Qiong Ye; Yong-Hua Li; Ren-Gen Xiong; Brendan F Abrahams; Zhi-Guo Liu; Zi-Ling Xue; Xiao-Zeng You
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  2 in total

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