Literature DB >> 21579801

trans-1-Phenyl-pyrrolidine-2,5-dicarbo-nitrile.

Wei Han1, Armin R Ofial, Peter Mayer.   

Abstract

In the title compound, C(12)H(11)N(3), the plane of the phenyl ring and the least-squares plane of the pyrrolidine ring enclose an angle of 14.30 (6)°. The intra-cyclic N atom features a nearly trigonal-planar coordination geometry due to π-inter-actions with the aromatic system. The pyrrolidine ring is present in a twist conformation for which the closest pucker descriptor is (C9)T(C8). Weak inter-molecular C-H⋯N and C-H⋯π contacts occur.

Entities:  

Year:  2010        PMID: 21579801      PMCID: PMC2979938          DOI: 10.1107/S1600536810001479

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the synthesis, see: Han & Ofial (2009 ▶); Takahashi et al. (1986 ▶). For a related structure, see: Menezes et al. (2007 ▶). For puckering analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C12H11N3 M = 197.24 Orthorhombic, a = 9.1807 (1) Å b = 14.5693 (2) Å c = 15.7576 (2) Å V = 2107.68 (5) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 200 K 0.33 × 0.18 × 0.15 mm

Data collection

Nonius KappaCCD diffractometer 16161 measured reflections 2413 independent reflections 2109 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.107 S = 1.06 2413 reflections 136 parameters H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.18 e Å−3 Data collection: COLLECT (Hooft, 2004 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810001479/fl2285sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810001479/fl2285Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H11N3F(000) = 832
Mr = 197.24Dx = 1.243 (1) Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 9019 reflections
a = 9.1807 (1) Åθ = 3.1–27.5°
b = 14.5693 (2) ŵ = 0.08 mm1
c = 15.7576 (2) ÅT = 200 K
V = 2107.68 (5) Å3Block, colourless
Z = 80.33 × 0.18 × 0.15 mm
Nonius KappaCCD diffractometer2109 reflections with I > 2σ(I)
Radiation source: rotating anodeRint = 0.022
MONTEL, graded multilayered X-ray opticsθmax = 27.5°, θmin = 3.4°
Detector resolution: 9 pixels mm-1h = −11→11
CCD; rotation images; thick slices, phi/ω–scank = −18→18
16161 measured reflectionsl = −20→20
2413 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.049P)2 + 0.5393P] where P = (Fo2 + 2Fc2)/3
2413 reflections(Δ/σ)max < 0.001
136 parametersΔρmax = 0.14 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on all data will be even larger.
xyzUiso*/Ueq
N10.91889 (10)0.12762 (7)0.48710 (6)0.0339 (2)
N20.63244 (13)0.15665 (9)0.34906 (8)0.0515 (3)
N31.27530 (11)0.14135 (8)0.55151 (7)0.0460 (3)
C10.84192 (11)0.11277 (7)0.56211 (6)0.0289 (2)
C20.71584 (12)0.05831 (8)0.56245 (7)0.0331 (3)
H20.68060.03290.51090.040*
C30.64254 (13)0.04149 (8)0.63784 (8)0.0395 (3)
H30.55690.00490.63730.047*
C40.69229 (13)0.07717 (9)0.71358 (8)0.0414 (3)
H40.64230.06470.76510.050*
C50.81566 (13)0.13119 (9)0.71352 (7)0.0393 (3)
H50.85010.15610.76550.047*
C60.89031 (12)0.14984 (8)0.63898 (7)0.0338 (3)
H60.97440.18780.64010.041*
C70.87833 (12)0.08771 (7)0.40605 (6)0.0313 (2)
H70.87070.01950.41120.038*
C81.00567 (13)0.11327 (8)0.34813 (7)0.0385 (3)
H8A1.08570.06800.35270.046*
H8B0.97420.11760.28820.046*
C91.05183 (14)0.20663 (8)0.38243 (8)0.0405 (3)
H9A0.98880.25610.35980.049*
H9B1.15440.22020.36760.049*
C101.03301 (11)0.19671 (7)0.47859 (7)0.0326 (3)
H101.00030.25620.50380.039*
C110.73934 (13)0.12635 (8)0.37363 (7)0.0349 (3)
C121.16995 (12)0.16549 (7)0.51982 (7)0.0342 (3)
U11U22U33U12U13U23
N10.0323 (5)0.0433 (5)0.0262 (5)−0.0116 (4)0.0000 (4)0.0001 (4)
N20.0473 (7)0.0588 (7)0.0483 (6)0.0060 (5)−0.0134 (5)−0.0106 (5)
N30.0382 (6)0.0456 (6)0.0542 (7)−0.0001 (5)−0.0083 (5)−0.0055 (5)
C10.0275 (5)0.0320 (5)0.0270 (5)0.0013 (4)−0.0005 (4)0.0025 (4)
C20.0315 (6)0.0356 (6)0.0321 (5)−0.0039 (4)0.0000 (4)−0.0001 (4)
C30.0342 (6)0.0412 (6)0.0432 (6)−0.0030 (5)0.0068 (5)0.0056 (5)
C40.0421 (7)0.0493 (7)0.0327 (6)0.0067 (5)0.0094 (5)0.0067 (5)
C50.0426 (7)0.0476 (6)0.0277 (5)0.0067 (5)−0.0022 (5)−0.0020 (5)
C60.0311 (6)0.0391 (6)0.0311 (6)0.0004 (4)−0.0027 (4)−0.0014 (4)
C70.0351 (6)0.0322 (5)0.0267 (5)−0.0007 (4)0.0003 (4)0.0000 (4)
C80.0388 (6)0.0453 (7)0.0315 (6)0.0038 (5)0.0070 (5)0.0045 (5)
C90.0384 (6)0.0427 (6)0.0405 (6)−0.0041 (5)0.0031 (5)0.0128 (5)
C100.0290 (5)0.0310 (5)0.0379 (6)−0.0032 (4)0.0005 (4)0.0036 (4)
C110.0387 (6)0.0369 (6)0.0289 (5)−0.0030 (5)−0.0031 (5)−0.0057 (4)
C120.0328 (6)0.0312 (5)0.0388 (6)−0.0052 (4)0.0003 (5)−0.0022 (4)
N1—C11.3939 (13)C5—H50.9500
N1—C71.4519 (14)C6—H60.9500
N1—C101.4591 (13)C7—C111.4853 (16)
N2—C111.1437 (16)C7—C81.5291 (15)
N3—C121.1438 (16)C7—H71.0000
C1—C61.3987 (15)C8—C91.5238 (17)
C1—C21.4034 (15)C8—H8A0.9900
C2—C31.3873 (15)C8—H8B0.9900
C2—H20.9500C9—C101.5320 (16)
C3—C41.3796 (18)C9—H9A0.9900
C3—H30.9500C9—H9B0.9900
C4—C51.3791 (18)C10—C121.4864 (15)
C4—H40.9500C10—H101.0000
C5—C61.3868 (16)
C1—N1—C7123.63 (9)N1—C7—H7110.2
C1—N1—C10123.29 (9)C11—C7—H7110.2
C7—N1—C10112.31 (8)C8—C7—H7110.2
N1—C1—C6120.89 (10)C9—C8—C7102.62 (9)
N1—C1—C2120.60 (9)C9—C8—H8A111.2
C6—C1—C2118.49 (10)C7—C8—H8A111.2
C3—C2—C1120.22 (10)C9—C8—H8B111.2
C3—C2—H2119.9C7—C8—H8B111.2
C1—C2—H2119.9H8A—C8—H8B109.2
C4—C3—C2120.91 (11)C8—C9—C10103.60 (9)
C4—C3—H3119.5C8—C9—H9A111.0
C2—C3—H3119.5C10—C9—H9A111.0
C5—C4—C3119.10 (11)C8—C9—H9B111.0
C5—C4—H4120.5C10—C9—H9B111.0
C3—C4—H4120.5H9A—C9—H9B109.0
C4—C5—C6121.22 (11)N1—C10—C12110.86 (9)
C4—C5—H5119.4N1—C10—C9103.71 (9)
C6—C5—H5119.4C12—C10—C9111.46 (9)
C5—C6—C1120.06 (11)N1—C10—H10110.2
C5—C6—H6120.0C12—C10—H10110.2
C1—C6—H6120.0C9—C10—H10110.2
N1—C7—C11111.78 (9)N2—C11—C7179.49 (13)
N1—C7—C8103.38 (9)N3—C12—C10179.91 (15)
C11—C7—C8111.05 (9)
C7—N1—C1—C6177.08 (10)C10—N1—C7—C11−102.29 (11)
C10—N1—C1—C6−13.76 (16)C1—N1—C7—C8−172.55 (10)
C7—N1—C1—C2−1.36 (16)C10—N1—C7—C817.22 (12)
C10—N1—C1—C2167.81 (10)N1—C7—C8—C9−33.54 (11)
N1—C1—C2—C3177.94 (10)C11—C7—C8—C986.48 (11)
C6—C1—C2—C3−0.53 (16)C7—C8—C9—C1037.66 (11)
C1—C2—C3—C4−0.45 (18)C1—N1—C10—C1276.32 (13)
C2—C3—C4—C50.83 (18)C7—N1—C10—C12−113.42 (10)
C3—C4—C5—C6−0.22 (18)C1—N1—C10—C9−163.96 (10)
C4—C5—C6—C1−0.78 (18)C7—N1—C10—C96.30 (12)
N1—C1—C6—C5−177.33 (10)C8—C9—C10—N1−27.35 (12)
C2—C1—C6—C51.14 (16)C8—C9—C10—C1291.97 (11)
C1—N1—C7—C1167.93 (13)
Cg is the centroid of the C1–C6 ring.
D—H···AD—HH···AD···AD—H···A
C6—H6···N2i0.952.703.5952 (17)158
C8—H8B···N2ii0.992.673.3777 (17)129
C10—H10···N3iii1.002.693.3748 (15)126
C8—H8A···Cgi0.992.743.6937 (13)162
C9—H9B···Cgiv0.992.883.5111 (13)122
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C1–C6 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6⋯N2i0.952.703.5952 (17)158
C8—H8B⋯N2ii0.992.673.3777 (17)129
C10—H10⋯N3iii1.002.693.3748 (15)126
C8—H8ACgi0.992.743.6937 (13)162
C9—H9BCgiv0.992.883.5111 (13)122

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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