Literature DB >> 21579769

cis,trans,cis,cis-7-tert-Butyl-dimethyl-silyl-oxy-4,10-dimethyl-tetra-cyclo[5.4.1.0.0]dodecan-2-one.

Philipp Weyermann, Reinhart Keese, Helen Stoeckli-Evans.   

Abstract

In the structure of the title compound, C(20)H(34)O(2)Si, a cis,trans,cis,cis-[4.5.5.5]fenestrane derivative, the geometry of the central C(C)(4) substructure shows considerable distortion from an ideal tetra-hedral arrangement towards planarity, with two opposite bridgehead bond angles of 128.87 (18) and 122.83 (17)°. The other bridgehead angle of the trans-bicyclo-[3.3.0]octane subunit is also large [126.57 (19)°].

Entities:  

Year:  2010        PMID: 21579769      PMCID: PMC2979968          DOI: 10.1107/S1600536810000887

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and structures of related compounds, see: Thommen et al. (1996 ▶); Wang et al. (1996 ▶); Weyermann (1997 ▶); Weyermann & Keese (2010 ▶). For information on planarizing distortions in the central C(C)4 moiety, see: Keese (2006 ▶). For methods to enhance the planarizing distortions in the central C(C)4 substructure, see: Luef & Keese (1993 ▶). For an analysis of the bond angles and other details concerning trans-fused bicyclo­[3.3.0]octa­nes, see: Hirschi et al. (1992 ▶). For information concerning the Pauson–Khand reaction, see: Khand, Knox, Pauson & Watts (1973 ▶); Khand, Knox, Pauson, Watts & Foreman (1973 ▶).

Experimental

Crystal data

C20H34O2Si M = 334.56 Orthorhombic, a = 13.7374 (13) Å b = 14.7647 (11) Å c = 19.2829 (12) Å V = 3911.1 (5) Å3 Z = 8 Mo Kα radiation μ = 0.13 mm−1 T = 223 K 0.53 × 0.42 × 0.34 mm

Data collection

Stoe AED2 four-circle diffractometer 7284 measured reflections 3642 independent reflections 2718 reflections with I > 2σ(I) R int = 0.042 3 standard reflections every 60 min intensity decay: <1%

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.116 S = 1.07 3642 reflections 216 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.29 e Å−3 Data collection: STADI-4 (Stoe & Cie, 1997 ▶); cell refinement: STADI-4; data reduction: X-RED (Stoe & Cie, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810000887/fk2011sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810000887/fk2011Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H34O2SiF(000) = 1472
Mr = 334.56Dx = 1.136 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 20 reflections
a = 13.7374 (13) Åθ = 14–17.7°
b = 14.7647 (11) ŵ = 0.13 mm1
c = 19.2829 (12) ÅT = 223 K
V = 3911.1 (5) Å3Block, colourless
Z = 80.53 × 0.42 × 0.34 mm
Stoe AED2 four-circle diffractometerRint = 0.042
Radiation source: fine-focus sealed tubeθmax = 25.5°, θmin = 2.1°
graphiteh = −16→16
2θ/ω scansk = 0→17
7284 measured reflectionsl = 0→23
3642 independent reflections3 standard reflections every 60 min
2718 reflections with I > 2σ(I) intensity decay: <1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H-atom parameters constrained
wR(F2) = 0.116w = 1/[σ2(Fo2) + (0.0378P)2 + 2.3403P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
3642 reflectionsΔρmax = 0.28 e Å3
216 parametersΔρmin = −0.29 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0018 (5)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Si10.18635 (4)0.81357 (4)0.04887 (3)0.0263 (2)
O20.27615 (14)0.95616 (16)0.38174 (11)0.0711 (8)
O70.17598 (10)0.86338 (10)0.12503 (7)0.0312 (5)
C10.21973 (17)0.97101 (17)0.26241 (13)0.0408 (8)
C20.21585 (18)0.93807 (18)0.33818 (13)0.0454 (9)
C30.12597 (18)0.87879 (17)0.35050 (12)0.0401 (8)
C40.09843 (16)0.84971 (14)0.27688 (11)0.0301 (7)
C5−0.00409 (17)0.83122 (15)0.24976 (12)0.0350 (7)
C60.00658 (16)0.84850 (16)0.17076 (12)0.0355 (7)
C70.09821 (15)0.90983 (14)0.15884 (11)0.0274 (6)
C80.0748 (2)0.99911 (16)0.12245 (12)0.0427 (8)
C90.0247 (2)1.05514 (15)0.17828 (12)0.0457 (9)
C100.07572 (17)1.03098 (14)0.24635 (12)0.0346 (7)
C110.1814 (2)1.06806 (17)0.25435 (15)0.0527 (9)
C120.12488 (15)0.93286 (14)0.23397 (10)0.0264 (6)
C130.16461 (18)0.76782 (15)0.25992 (13)0.0403 (8)
C140.0109 (2)1.05498 (16)0.30795 (13)0.0445 (8)
C150.15738 (19)0.68993 (15)0.05640 (13)0.0419 (8)
C160.10610 (18)0.86511 (17)−0.01811 (12)0.0418 (8)
C170.31834 (16)0.82806 (16)0.02537 (12)0.0340 (7)
C180.3464 (2)0.92884 (18)0.02703 (16)0.0554 (10)
C190.38166 (19)0.7765 (2)0.07777 (15)0.0543 (10)
C200.3373 (2)0.7910 (2)−0.04778 (14)0.0584 (10)
H10.279500.955900.236200.0490*
H3A0.141700.826300.379600.0480*
H3B0.073400.913400.372400.0480*
H5A−0.051600.872700.270600.0420*
H5B−0.023900.768700.259100.0420*
H6A−0.051800.878700.152900.0430*
H6B0.014400.790900.146200.0430*
H8A0.134301.028900.106300.0510*
H8B0.031400.989200.082800.0510*
H9A−0.044701.040200.180700.0550*
H9B0.031401.120000.168400.0550*
H11A0.205801.099000.212900.0630*
H11B0.190701.105600.295700.0630*
H13A0.232300.785300.265200.0600*
H13B0.153100.748500.212500.0600*
H13C0.149900.718400.291400.0600*
H14A0.047701.048600.350600.0670*
H14B−0.044701.014600.309000.0670*
H14C−0.011401.117000.303400.0670*
H15A0.191400.664700.096000.0630*
H15B0.177900.658900.014500.0630*
H15C0.087800.682200.062600.0630*
H16A0.039000.86290−0.002500.0630*
H16B0.112400.83170−0.061200.0630*
H16C0.125100.92760−0.025600.0630*
H18A0.306400.96200−0.005700.0830*
H18B0.414400.935400.014600.0830*
H18C0.336000.952700.073300.0830*
H19A0.367300.797700.124300.0810*
H19B0.449900.787000.067500.0810*
H19C0.367800.712200.074600.0810*
H20A0.298600.82450−0.081100.0880*
H20B0.319600.72740−0.049500.0880*
H20C0.405800.79760−0.059000.0880*
U11U22U33U12U13U23
Si10.0267 (3)0.0288 (3)0.0234 (3)0.0009 (3)−0.0002 (2)−0.0016 (2)
O20.0468 (12)0.1080 (18)0.0584 (13)0.0074 (12)−0.0202 (10)−0.0360 (12)
O70.0315 (8)0.0354 (8)0.0266 (8)0.0075 (7)0.0024 (6)−0.0031 (6)
C10.0288 (12)0.0511 (15)0.0425 (14)−0.0097 (11)0.0079 (10)−0.0142 (12)
C20.0339 (13)0.0608 (17)0.0415 (14)0.0103 (12)−0.0048 (11)−0.0216 (13)
C30.0426 (14)0.0460 (14)0.0318 (13)0.0112 (12)−0.0006 (11)0.0006 (11)
C40.0323 (12)0.0287 (11)0.0292 (11)0.0019 (10)0.0013 (9)0.0004 (9)
C50.0323 (12)0.0314 (12)0.0414 (12)−0.0064 (10)0.0077 (10)−0.0011 (10)
C60.0271 (12)0.0399 (13)0.0394 (13)0.0012 (10)−0.0039 (10)−0.0063 (11)
C70.0284 (11)0.0281 (11)0.0256 (11)0.0048 (9)0.0022 (9)−0.0019 (9)
C80.0627 (17)0.0343 (13)0.0310 (12)0.0148 (12)0.0064 (12)0.0048 (10)
C90.0645 (17)0.0298 (13)0.0429 (14)0.0164 (12)0.0083 (13)0.0055 (11)
C100.0435 (14)0.0248 (11)0.0355 (12)−0.0003 (10)0.0094 (11)−0.0008 (10)
C110.0632 (18)0.0436 (14)0.0512 (15)−0.0225 (14)0.0151 (14)−0.0114 (13)
C120.0238 (10)0.0266 (10)0.0287 (11)−0.0010 (9)0.0032 (9)−0.0028 (9)
C130.0480 (15)0.0355 (13)0.0375 (14)0.0132 (11)−0.0011 (11)0.0034 (11)
C140.0577 (16)0.0332 (13)0.0427 (14)0.0102 (12)0.0110 (13)−0.0047 (11)
C150.0503 (15)0.0333 (12)0.0421 (14)−0.0037 (11)0.0075 (12)−0.0053 (11)
C160.0405 (14)0.0484 (15)0.0365 (13)0.0056 (12)−0.0095 (11)−0.0016 (11)
C170.0288 (11)0.0417 (13)0.0314 (11)0.0007 (10)−0.0003 (10)−0.0056 (10)
C180.0435 (15)0.0518 (17)0.0710 (19)−0.0147 (13)0.0071 (14)−0.0009 (15)
C190.0355 (14)0.0663 (19)0.0610 (17)0.0126 (13)−0.0082 (13)−0.0025 (15)
C200.0459 (16)0.085 (2)0.0443 (15)−0.0068 (14)0.0161 (13)−0.0147 (15)
Si1—O71.6486 (15)C5—H5B0.9800
Si1—C151.874 (2)C6—H6A0.9800
Si1—C161.861 (2)C6—H6B0.9800
Si1—C171.881 (2)C8—H8A0.9800
O2—C21.210 (3)C8—H8B0.9800
O7—C71.427 (3)C9—H9A0.9800
C1—C21.541 (4)C9—H9B0.9800
C1—C111.535 (4)C11—H11A0.9800
C1—C121.522 (3)C11—H11B0.9800
C2—C31.532 (4)C13—H13A0.9700
C3—C41.531 (3)C13—H13B0.9700
C4—C51.527 (3)C13—H13C0.9700
C4—C121.524 (3)C14—H14A0.9700
C4—C131.548 (3)C14—H14B0.9700
C5—C61.552 (3)C14—H14C0.9700
C6—C71.568 (3)C15—H15A0.9700
C7—C81.528 (3)C15—H15B0.9700
C7—C121.533 (3)C15—H15C0.9700
C8—C91.522 (3)C16—H16A0.9700
C9—C101.530 (3)C16—H16B0.9700
C10—C111.559 (4)C16—H16C0.9700
C10—C121.616 (3)C18—H18A0.9700
C10—C141.526 (3)C18—H18B0.9700
C17—C181.537 (4)C18—H18C0.9700
C17—C191.535 (4)C19—H19A0.9700
C17—C201.535 (4)C19—H19B0.9700
C1—H10.9900C19—H19C0.9700
C3—H3A0.9800C20—H20A0.9700
C3—H3B0.9800C20—H20B0.9700
C5—H5A0.9800C20—H20C0.9700
O7—Si1—C15110.32 (10)C5—C6—H6A110.00
O7—Si1—C16112.62 (9)C5—C6—H6B110.00
O7—Si1—C17104.31 (9)C7—C6—H6A110.00
C15—Si1—C16109.05 (11)C7—C6—H6B110.00
C15—Si1—C17109.52 (11)H6A—C6—H6B108.00
C16—Si1—C17110.94 (11)C7—C8—H8A111.00
Si1—O7—C7133.31 (13)C7—C8—H8B111.00
C2—C1—C11112.3 (2)C9—C8—H8A111.00
C2—C1—C12101.26 (18)C9—C8—H8B111.00
C11—C1—C1290.88 (18)H8A—C8—H8B109.00
O2—C2—C1124.4 (2)C8—C9—H9A111.00
O2—C2—C3124.8 (2)C8—C9—H9B111.00
C1—C2—C3110.8 (2)C10—C9—H9A111.00
C2—C3—C4102.45 (18)C10—C9—H9B111.00
C3—C4—C5126.57 (19)H9A—C9—H9B109.00
C3—C4—C12102.63 (17)C1—C11—H11A114.00
C3—C4—C13105.66 (18)C1—C11—H11B114.00
C5—C4—C12100.25 (17)C10—C11—H11A114.00
C5—C4—C13109.25 (18)C10—C11—H11B114.00
C12—C4—C13111.99 (18)H11A—C11—H11B111.00
C4—C5—C6102.69 (18)C4—C13—H13A109.00
C5—C6—C7108.35 (18)C4—C13—H13B109.00
O7—C7—C6112.99 (17)C4—C13—H13C109.00
O7—C7—C8111.25 (17)H13A—C13—H13B109.00
O7—C7—C12111.07 (16)H13A—C13—H13C110.00
C6—C7—C8113.38 (18)H13B—C13—H13C110.00
C6—C7—C12100.46 (17)C10—C14—H14A109.00
C8—C7—C12107.04 (17)C10—C14—H14B109.00
C7—C8—C9103.85 (18)C10—C14—H14C109.00
C8—C9—C10105.8 (2)H14A—C14—H14B109.00
C9—C10—C11115.4 (2)H14A—C14—H14C109.00
C9—C10—C12105.88 (17)H14B—C14—H14C110.00
C9—C10—C14110.3 (2)Si1—C15—H15A109.00
C11—C10—C1286.58 (16)Si1—C15—H15B109.00
C11—C10—C14112.6 (2)Si1—C15—H15C109.00
C12—C10—C14124.53 (18)H15A—C15—H15B110.00
C1—C11—C1090.09 (18)H15A—C15—H15C109.00
C1—C12—C4107.85 (17)H15B—C15—H15C109.00
C1—C12—C7128.87 (18)Si1—C16—H16A109.00
C1—C12—C1088.44 (16)Si1—C16—H16B109.00
C4—C12—C7106.11 (17)Si1—C16—H16C109.00
C4—C12—C10122.83 (17)H16A—C16—H16B109.00
C7—C12—C10103.81 (16)H16A—C16—H16C110.00
Si1—C17—C18110.29 (16)H16B—C16—H16C109.00
Si1—C17—C19109.34 (16)C17—C18—H18A109.00
Si1—C17—C20110.14 (16)C17—C18—H18B109.00
C18—C17—C19108.9 (2)C17—C18—H18C109.00
C18—C17—C20108.8 (2)H18A—C18—H18B110.00
C19—C17—C20109.4 (2)H18A—C18—H18C109.00
C2—C1—H1116.00H18B—C18—H18C109.00
C11—C1—H1116.00C17—C19—H19A109.00
C12—C1—H1116.00C17—C19—H19B109.00
C2—C3—H3A111.00C17—C19—H19C109.00
C2—C3—H3B111.00H19A—C19—H19B109.00
C4—C3—H3A111.00H19A—C19—H19C110.00
C4—C3—H3B111.00H19B—C19—H19C109.00
H3A—C3—H3B109.00C17—C20—H20A110.00
C4—C5—H5A111.00C17—C20—H20B109.00
C4—C5—H5B111.00C17—C20—H20C109.00
C6—C5—H5A111.00H20A—C20—H20B109.00
C6—C5—H5B111.00H20A—C20—H20C109.00
H5A—C5—H5B109.00H20B—C20—H20C109.00
C15—Si1—O7—C7−92.99 (19)C5—C4—C12—C1170.87 (17)
C16—Si1—O7—C729.1 (2)C5—C4—C12—C7−47.9 (2)
C17—Si1—O7—C7149.49 (18)C5—C4—C12—C1070.9 (2)
O7—Si1—C17—C18−55.54 (19)C13—C4—C12—C1−73.4 (2)
O7—Si1—C17—C1964.20 (18)C13—C4—C12—C767.8 (2)
O7—Si1—C17—C20−175.58 (16)C13—C4—C12—C10−173.39 (19)
C15—Si1—C17—C18−173.61 (17)C4—C5—C6—C7−21.3 (2)
C15—Si1—C17—C19−53.9 (2)C5—C6—C7—O7111.29 (19)
C15—Si1—C17—C2066.4 (2)C5—C6—C7—C8−121.0 (2)
C16—Si1—C17—C1866.0 (2)C5—C6—C7—C12−7.1 (2)
C16—Si1—C17—C19−174.29 (17)O7—C7—C8—C9−157.49 (18)
C16—Si1—C17—C20−54.1 (2)C6—C7—C8—C973.9 (2)
Si1—O7—C7—C660.9 (2)C12—C7—C8—C9−36.0 (2)
Si1—O7—C7—C8−67.9 (2)O7—C7—C12—C143.8 (3)
Si1—O7—C7—C12172.93 (14)O7—C7—C12—C4−86.14 (19)
C11—C1—C2—O2−81.3 (3)O7—C7—C12—C10143.17 (16)
C11—C1—C2—C399.2 (2)C6—C7—C12—C1163.6 (2)
C12—C1—C2—O2−177.0 (3)C6—C7—C12—C433.6 (2)
C12—C1—C2—C33.5 (3)C6—C7—C12—C10−97.06 (18)
C2—C1—C11—C10−86.9 (2)C8—C7—C12—C1−77.8 (3)
C12—C1—C11—C1015.64 (18)C8—C7—C12—C4152.24 (18)
C2—C1—C12—C4−26.3 (2)C8—C7—C12—C1021.5 (2)
C2—C1—C12—C7−155.6 (2)C7—C8—C9—C1035.9 (2)
C2—C1—C12—C1097.84 (18)C8—C9—C10—C1171.4 (2)
C11—C1—C12—C4−139.21 (19)C8—C9—C10—C12−22.4 (2)
C11—C1—C12—C791.5 (2)C8—C9—C10—C14−159.60 (19)
C11—C1—C12—C10−15.08 (18)C9—C10—C11—C1−120.7 (2)
O2—C2—C3—C4−159.7 (3)C12—C10—C11—C1−14.73 (17)
C1—C2—C3—C419.8 (3)C14—C10—C11—C1111.5 (2)
C2—C3—C4—C5−147.8 (2)C9—C10—C12—C1130.35 (19)
C2—C3—C4—C12−34.7 (2)C9—C10—C12—C4−119.3 (2)
C2—C3—C4—C1382.8 (2)C9—C10—C12—C70.6 (2)
C3—C4—C5—C6155.0 (2)C11—C10—C12—C114.86 (18)
C12—C4—C5—C640.8 (2)C11—C10—C12—C4125.2 (2)
C13—C4—C5—C6−77.0 (2)C11—C10—C12—C7−114.91 (18)
C3—C4—C12—C139.5 (2)C14—C10—C12—C1−100.4 (2)
C3—C4—C12—C7−179.32 (17)C14—C10—C12—C49.9 (3)
C3—C4—C12—C10−60.5 (2)C14—C10—C12—C7129.8 (2)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Carbon flatland: planar tetracoordinate carbon and fenestranes.

Authors:  Reinhart Keese
Journal:  Chem Rev       Date:  2006-12       Impact factor: 60.622

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.