| Literature DB >> 21579754 |
Grzegorz Dutkiewicz, B P Siddaraju, H S Yathirajan, A N Mayekar, Maciej Kubicki.
Abstract
IN THE TITLE COMPOUND (SYSTEMATIC NAME: 1-benz-yloxy-3-methyl-1-oxobutan-2-aminium chloride), C(12)H(18)NO(2) (+)·Cl(-), the ester group is approximately planar, with a maximum deviation of 0.040 (2) Å from the least-squares plane, and makes a dihedral angle of 28.92 (16)° with the phenyl ring. The crystal structure is organized by N-H⋯Cl hydrogen bonds which join the two components into a chain along the b axis. Pairs of chains arranged anti-parallel are inter-connected by further N-H⋯Cl hydrogen bonds, forming eight-membered rings. Similar packing modes have been observed in a number of amino acid ester halides with a short unit-cell parameter of ca 5.5 Å along the direction in which the chains run.Entities:
Year: 2010 PMID: 21579754 PMCID: PMC2979941 DOI: 10.1107/S1600536810000176
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H18NO2+·Cl− | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 1449 reflections |
| θ = 2.1–26.9° | |
| µ = 0.27 mm−1 | |
| β = 96.58 (1)° | Prism, colourless |
| 0.4 × 0.2 × 0.2 mm | |
| Oxford Diffraction Xcalibur Sapphire2 diffractometer | 2010 independent reflections |
| Radiation source: Nova (Mo) X-ray Source | 1652 reflections with |
| graphite | |
| Detector resolution: 5.2679 pixels mm-1 | θmax = 26.9°, θmin = 2.1° |
| ω scan | |
| Absorption correction: multi-scan ( | |
| 2649 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 2010 reflections | Δρmax = 0.17 e Å−3 |
| 159 parameters | Δρmin = −0.24 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 530 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.02 (8) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.6929 (3) | 1.0154 (5) | 0.2145 (2) | 0.0492 (6) | |
| O11 | 0.7115 (2) | 0.9397 (3) | 0.31112 (13) | 0.0744 (6) | |
| C12 | 0.6987 (5) | 1.1297 (7) | 0.3890 (2) | 0.0963 (12) | |
| H12A | 0.6100 | 1.2132 | 0.3756 | 0.116* | |
| H12B | 0.7719 | 1.2516 | 0.3878 | 0.116* | |
| C13 | 0.7099 (4) | 1.0030 (7) | 0.4919 (2) | 0.0766 (10) | |
| C14 | 0.6351 (4) | 1.0998 (9) | 0.5647 (2) | 0.1010 (13) | |
| H14 | 0.5791 | 1.2380 | 0.5506 | 0.121* | |
| C15 | 0.6452 (6) | 0.9849 (14) | 0.6612 (3) | 0.128 (2) | |
| H15 | 0.5947 | 1.0479 | 0.7114 | 0.154* | |
| C16 | 0.7258 (7) | 0.7875 (13) | 0.6824 (4) | 0.137 (3) | |
| H16 | 0.7314 | 0.7146 | 0.7469 | 0.165* | |
| C17 | 0.7994 (6) | 0.6933 (11) | 0.6098 (4) | 0.1375 (18) | |
| H17 | 0.8544 | 0.5539 | 0.6243 | 0.165* | |
| C18 | 0.7931 (5) | 0.8035 (8) | 0.5143 (3) | 0.1053 (14) | |
| H18 | 0.8459 | 0.7411 | 0.4653 | 0.126* | |
| O1 | 0.6602 (2) | 1.2196 (4) | 0.18837 (14) | 0.0702 (6) | |
| C2 | 0.7212 (2) | 0.8078 (4) | 0.14310 (17) | 0.0454 (6) | |
| H2 | 0.6851 | 0.6536 | 0.1691 | 0.054* | |
| N2 | 0.6429 (2) | 0.8642 (6) | 0.04138 (15) | 0.0476 (5) | |
| H2A | 0.678 (3) | 1.021 (7) | 0.013 (2) | 0.071 (10)* | |
| H2B | 0.649 (3) | 0.740 (6) | −0.0041 (19) | 0.049 (8)* | |
| H2C | 0.546 (3) | 0.867 (7) | 0.0479 (16) | 0.064 (7)* | |
| C3 | 0.8749 (3) | 0.7732 (5) | 0.1324 (2) | 0.0558 (7) | |
| H3 | 0.8806 | 0.6464 | 0.0796 | 0.067* | |
| C4 | 0.9422 (3) | 1.0029 (7) | 0.0953 (3) | 0.0886 (11) | |
| H4A | 0.9374 | 1.1335 | 0.1444 | 0.124* | |
| H4B | 0.8945 | 1.0526 | 0.0304 | 0.124* | |
| H4C | 1.0375 | 0.9688 | 0.0876 | 0.124* | |
| C5 | 0.9560 (3) | 0.6756 (7) | 0.2299 (3) | 0.0844 (10) | |
| H5A | 1.0481 | 0.6321 | 0.2163 | 0.118* | |
| H5B | 0.9103 | 0.5321 | 0.2530 | 0.118* | |
| H5C | 0.9609 | 0.8010 | 0.2820 | 0.118* | |
| Cl1 | 0.33538 (6) | 0.86692 (12) | 0.08481 (4) | 0.05096 (19) |
| C1 | 0.0545 (16) | 0.0364 (15) | 0.0597 (15) | −0.0021 (13) | 0.0201 (12) | 0.0033 (13) |
| O11 | 0.1207 (16) | 0.0510 (14) | 0.0542 (10) | 0.0173 (11) | 0.0221 (10) | 0.0029 (8) |
| C12 | 0.171 (4) | 0.060 (2) | 0.0638 (19) | 0.016 (3) | 0.040 (2) | −0.0077 (17) |
| C13 | 0.107 (3) | 0.068 (2) | 0.0550 (17) | −0.004 (2) | 0.0097 (17) | −0.0008 (16) |
| C14 | 0.117 (3) | 0.125 (4) | 0.062 (2) | −0.008 (3) | 0.019 (2) | −0.018 (2) |
| C15 | 0.146 (5) | 0.179 (6) | 0.063 (3) | −0.054 (4) | 0.025 (3) | −0.021 (3) |
| C16 | 0.181 (6) | 0.160 (6) | 0.064 (3) | −0.083 (5) | −0.015 (3) | 0.021 (3) |
| C17 | 0.190 (5) | 0.123 (4) | 0.089 (3) | 0.000 (4) | −0.030 (3) | 0.027 (3) |
| C18 | 0.143 (4) | 0.094 (4) | 0.078 (2) | 0.013 (3) | 0.011 (2) | 0.013 (2) |
| O1 | 0.1138 (17) | 0.0358 (12) | 0.0648 (12) | 0.0101 (11) | 0.0265 (11) | 0.0051 (9) |
| C2 | 0.0508 (14) | 0.0325 (16) | 0.0541 (13) | −0.0006 (11) | 0.0122 (10) | 0.0044 (10) |
| N2 | 0.0450 (12) | 0.0398 (12) | 0.0593 (11) | −0.0043 (17) | 0.0117 (9) | −0.0056 (15) |
| C3 | 0.0524 (16) | 0.0503 (16) | 0.0659 (16) | 0.0095 (13) | 0.0117 (13) | −0.0058 (13) |
| C4 | 0.055 (2) | 0.090 (3) | 0.123 (3) | −0.002 (2) | 0.0227 (18) | 0.021 (2) |
| C5 | 0.066 (2) | 0.082 (3) | 0.100 (2) | 0.0181 (19) | −0.0083 (17) | 0.0045 (19) |
| Cl1 | 0.0535 (3) | 0.0506 (4) | 0.0506 (3) | 0.0008 (4) | 0.0137 (2) | 0.0006 (3) |
| C1—O1 | 1.188 (3) | C18—H18 | 0.9300 |
| C1—O11 | 1.324 (3) | C2—N2 | 1.489 (3) |
| C1—C2 | 1.507 (3) | C2—C3 | 1.526 (3) |
| O11—C12 | 1.464 (4) | C2—H2 | 0.9800 |
| C12—C13 | 1.506 (4) | N2—H2A | 1.00 (3) |
| C12—H12A | 0.9700 | N2—H2B | 0.90 (3) |
| C12—H12B | 0.9700 | N2—H2C | 0.96 (3) |
| C13—C18 | 1.359 (5) | C3—C4 | 1.509 (4) |
| C13—C14 | 1.368 (5) | C3—C5 | 1.518 (4) |
| C14—C15 | 1.403 (6) | C3—H3 | 0.9800 |
| C14—H14 | 0.9300 | C4—H4A | 0.9600 |
| C15—C16 | 1.334 (7) | C4—H4B | 0.9600 |
| C15—H15 | 0.9300 | C4—H4C | 0.9600 |
| C16—C17 | 1.353 (8) | C5—H5A | 0.9600 |
| C16—H16 | 0.9300 | C5—H5B | 0.9600 |
| C17—C18 | 1.382 (6) | C5—H5C | 0.9600 |
| C17—H17 | 0.9300 | ||
| O1—C1—O11 | 124.5 (3) | N2—C2—C3 | 110.25 (19) |
| O1—C1—C2 | 125.0 (2) | C1—C2—C3 | 113.5 (2) |
| O11—C1—C2 | 110.5 (2) | N2—C2—H2 | 108.6 |
| C1—O11—C12 | 115.9 (2) | C1—C2—H2 | 108.6 |
| O11—C12—C13 | 107.6 (3) | C3—C2—H2 | 108.6 |
| O11—C12—H12A | 110.2 | C2—N2—H2A | 110.6 (17) |
| C13—C12—H12A | 110.2 | C2—N2—H2B | 112.0 (16) |
| O11—C12—H12B | 110.2 | H2A—N2—H2B | 109.2 (19) |
| C13—C12—H12B | 110.2 | C2—N2—H2C | 109.3 (13) |
| H12A—C12—H12B | 108.5 | H2A—N2—H2C | 113 (3) |
| C18—C13—C14 | 120.1 (4) | H2B—N2—H2C | 102 (3) |
| C18—C13—C12 | 122.4 (3) | C4—C3—C5 | 110.8 (3) |
| C14—C13—C12 | 117.5 (4) | C4—C3—C2 | 113.1 (2) |
| C13—C14—C15 | 118.2 (5) | C5—C3—C2 | 112.5 (2) |
| C13—C14—H14 | 120.9 | C4—C3—H3 | 106.6 |
| C15—C14—H14 | 120.9 | C5—C3—H3 | 106.6 |
| C16—C15—C14 | 121.4 (5) | C2—C3—H3 | 106.6 |
| C16—C15—H15 | 119.3 | C3—C4—H4A | 109.5 |
| C14—C15—H15 | 119.3 | C3—C4—H4B | 109.5 |
| C15—C16—C17 | 119.9 (5) | H4A—C4—H4B | 109.5 |
| C15—C16—H16 | 120.0 | C3—C4—H4C | 109.5 |
| C17—C16—H16 | 120.0 | H4A—C4—H4C | 109.5 |
| C16—C17—C18 | 120.2 (6) | H4B—C4—H4C | 109.5 |
| C16—C17—H17 | 119.9 | C3—C5—H5A | 109.5 |
| C18—C17—H17 | 119.9 | C3—C5—H5B | 109.5 |
| C13—C18—C17 | 120.1 (4) | H5A—C5—H5B | 109.5 |
| C13—C18—H18 | 119.9 | C3—C5—H5C | 109.5 |
| C17—C18—H18 | 119.9 | H5A—C5—H5C | 109.5 |
| N2—C2—C1 | 107.1 (2) | H5B—C5—H5C | 109.5 |
| O1—C1—O11—C12 | −4.1 (4) | C12—C13—C18—C17 | −179.8 (4) |
| C2—C1—O11—C12 | 175.1 (3) | C16—C17—C18—C13 | −1.8 (7) |
| C1—O11—C12—C13 | 174.8 (3) | O1—C1—C2—N2 | −25.0 (4) |
| O11—C12—C13—C18 | 34.5 (5) | O11—C1—C2—N2 | 155.9 (2) |
| O11—C12—C13—C14 | −147.1 (3) | O1—C1—C2—C3 | 96.9 (3) |
| C18—C13—C14—C15 | −1.1 (6) | O11—C1—C2—C3 | −82.2 (3) |
| C12—C13—C14—C15 | −179.5 (4) | N2—C2—C3—C4 | 62.6 (3) |
| C13—C14—C15—C16 | 0.4 (6) | C1—C2—C3—C4 | −57.6 (3) |
| C14—C15—C16—C17 | −0.3 (7) | N2—C2—C3—C5 | −170.9 (3) |
| C15—C16—C17—C18 | 1.1 (8) | C1—C2—C3—C5 | 69.0 (3) |
| C14—C13—C18—C17 | 1.9 (6) |
| H··· | ||||
| C2—H2···O1i | 0.98 | 2.38 | 3.301 (3) | 157 |
| N2—H2A···Cl1ii | 1.00 (3) | 2.26 (4) | 3.201 (3) | 156 (2) |
| N2—H2B···Cl1iii | 0.90 (3) | 2.29 (3) | 3.177 (3) | 166 (2) |
| N2—H2C···Cl1 | 0.96 (3) | 2.15 (3) | 3.101 (2) | 172.1 (18) |
| C4—H4C···Cl1iv | 0.96 | 2.95 | 3.904 (3) | 175 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C2—H2⋯O1i | 0.98 | 2.38 | 3.301 (3) | 157 |
| N2—H2 | 1.00 (3) | 2.26 (4) | 3.201 (3) | 156 (2) |
| N2—H2 | 0.90 (3) | 2.29 (3) | 3.177 (3) | 166 (2) |
| N2—H2 | 0.96 (3) | 2.15 (3) | 3.101 (2) | 172.1 (18) |
| C4—H4 | 0.96 | 2.95 | 3.904 (3) | 175 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .