Literature DB >> 21579754

Valyl benzyl ester chloride.

Grzegorz Dutkiewicz, B P Siddaraju, H S Yathirajan, A N Mayekar, Maciej Kubicki.   

Abstract

IN THE TITLE COMPOUND (SYSTEMATIC NAME: 1-benz-yloxy-3-methyl-1-oxobutan-2-aminium chloride), C(12)H(18)NO(2) (+)·Cl(-), the ester group is approximately planar, with a maximum deviation of 0.040 (2) Å from the least-squares plane, and makes a dihedral angle of 28.92 (16)° with the phenyl ring. The crystal structure is organized by N-H⋯Cl hydrogen bonds which join the two components into a chain along the b axis. Pairs of chains arranged anti-parallel are inter-connected by further N-H⋯Cl hydrogen bonds, forming eight-membered rings. Similar packing modes have been observed in a number of amino acid ester halides with a short unit-cell parameter of ca 5.5 Å along the direction in which the chains run.

Entities:  

Year:  2010        PMID: 21579754      PMCID: PMC2979941          DOI: 10.1107/S1600536810000176

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For valsartan, see: Black et al. (1997 ▶); Buhlmayer et al. (1994 ▶). For related structures, see: Bryndal et al. (2006 ▶); Jaeger et al. (2003 ▶); Nastopoulos et al. (1987 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶). For graph-set motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C12H18NO2Cl− M = 243.72 Monoclinic, a = 9.705 (1) Å b = 5.406 (1) Å c = 13.116 (2) Å β = 96.58 (1)° V = 683.60 (18) Å3 Z = 2 Mo Kα radiation μ = 0.27 mm−1 T = 295 K 0.4 × 0.2 × 0.2 mm

Data collection

Oxford Diffraction Xcalibur Sapphire2 diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.741, T max = 0.948 2649 measured reflections 2010 independent reflections 1652 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.077 S = 1.06 2010 reflections 159 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.24 e Å−3 Absolute structure: Flack (1983 ▶), 530 Friedel pairs Flack parameter: 0.02 (8) Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Stereochemical Workstation Operation Manual (Siemens, 1989 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810000176/is2507sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810000176/is2507Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H18NO2+·ClF(000) = 260
Mr = 243.72Dx = 1.184 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1449 reflections
a = 9.705 (1) Åθ = 2.1–26.9°
b = 5.406 (1) ŵ = 0.27 mm1
c = 13.116 (2) ÅT = 295 K
β = 96.58 (1)°Prism, colourless
V = 683.60 (18) Å30.4 × 0.2 × 0.2 mm
Z = 2
Oxford Diffraction Xcalibur Sapphire2 diffractometer2010 independent reflections
Radiation source: Nova (Mo) X-ray Source1652 reflections with I > 2σ(I)
graphiteRint = 0.023
Detector resolution: 5.2679 pixels mm-1θmax = 26.9°, θmin = 2.1°
ω scanh = −10→12
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −4→6
Tmin = 0.741, Tmax = 0.948l = −15→11
2649 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.077w = 1/[σ2(Fo2) + (0.040P)2] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
2010 reflectionsΔρmax = 0.17 e Å3
159 parametersΔρmin = −0.24 e Å3
1 restraintAbsolute structure: Flack (1983), 530 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.02 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6929 (3)1.0154 (5)0.2145 (2)0.0492 (6)
O110.7115 (2)0.9397 (3)0.31112 (13)0.0744 (6)
C120.6987 (5)1.1297 (7)0.3890 (2)0.0963 (12)
H12A0.61001.21320.37560.116*
H12B0.77191.25160.38780.116*
C130.7099 (4)1.0030 (7)0.4919 (2)0.0766 (10)
C140.6351 (4)1.0998 (9)0.5647 (2)0.1010 (13)
H140.57911.23800.55060.121*
C150.6452 (6)0.9849 (14)0.6612 (3)0.128 (2)
H150.59471.04790.71140.154*
C160.7258 (7)0.7875 (13)0.6824 (4)0.137 (3)
H160.73140.71460.74690.165*
C170.7994 (6)0.6933 (11)0.6098 (4)0.1375 (18)
H170.85440.55390.62430.165*
C180.7931 (5)0.8035 (8)0.5143 (3)0.1053 (14)
H180.84590.74110.46530.126*
O10.6602 (2)1.2196 (4)0.18837 (14)0.0702 (6)
C20.7212 (2)0.8078 (4)0.14310 (17)0.0454 (6)
H20.68510.65360.16910.054*
N20.6429 (2)0.8642 (6)0.04138 (15)0.0476 (5)
H2A0.678 (3)1.021 (7)0.013 (2)0.071 (10)*
H2B0.649 (3)0.740 (6)−0.0041 (19)0.049 (8)*
H2C0.546 (3)0.867 (7)0.0479 (16)0.064 (7)*
C30.8749 (3)0.7732 (5)0.1324 (2)0.0558 (7)
H30.88060.64640.07960.067*
C40.9422 (3)1.0029 (7)0.0953 (3)0.0886 (11)
H4A0.93741.13350.14440.124*
H4B0.89451.05260.03040.124*
H4C1.03750.96880.08760.124*
C50.9560 (3)0.6756 (7)0.2299 (3)0.0844 (10)
H5A1.04810.63210.21630.118*
H5B0.91030.53210.25300.118*
H5C0.96090.80100.28200.118*
Cl10.33538 (6)0.86692 (12)0.08481 (4)0.05096 (19)
U11U22U33U12U13U23
C10.0545 (16)0.0364 (15)0.0597 (15)−0.0021 (13)0.0201 (12)0.0033 (13)
O110.1207 (16)0.0510 (14)0.0542 (10)0.0173 (11)0.0221 (10)0.0029 (8)
C120.171 (4)0.060 (2)0.0638 (19)0.016 (3)0.040 (2)−0.0077 (17)
C130.107 (3)0.068 (2)0.0550 (17)−0.004 (2)0.0097 (17)−0.0008 (16)
C140.117 (3)0.125 (4)0.062 (2)−0.008 (3)0.019 (2)−0.018 (2)
C150.146 (5)0.179 (6)0.063 (3)−0.054 (4)0.025 (3)−0.021 (3)
C160.181 (6)0.160 (6)0.064 (3)−0.083 (5)−0.015 (3)0.021 (3)
C170.190 (5)0.123 (4)0.089 (3)0.000 (4)−0.030 (3)0.027 (3)
C180.143 (4)0.094 (4)0.078 (2)0.013 (3)0.011 (2)0.013 (2)
O10.1138 (17)0.0358 (12)0.0648 (12)0.0101 (11)0.0265 (11)0.0051 (9)
C20.0508 (14)0.0325 (16)0.0541 (13)−0.0006 (11)0.0122 (10)0.0044 (10)
N20.0450 (12)0.0398 (12)0.0593 (11)−0.0043 (17)0.0117 (9)−0.0056 (15)
C30.0524 (16)0.0503 (16)0.0659 (16)0.0095 (13)0.0117 (13)−0.0058 (13)
C40.055 (2)0.090 (3)0.123 (3)−0.002 (2)0.0227 (18)0.021 (2)
C50.066 (2)0.082 (3)0.100 (2)0.0181 (19)−0.0083 (17)0.0045 (19)
Cl10.0535 (3)0.0506 (4)0.0506 (3)0.0008 (4)0.0137 (2)0.0006 (3)
C1—O11.188 (3)C18—H180.9300
C1—O111.324 (3)C2—N21.489 (3)
C1—C21.507 (3)C2—C31.526 (3)
O11—C121.464 (4)C2—H20.9800
C12—C131.506 (4)N2—H2A1.00 (3)
C12—H12A0.9700N2—H2B0.90 (3)
C12—H12B0.9700N2—H2C0.96 (3)
C13—C181.359 (5)C3—C41.509 (4)
C13—C141.368 (5)C3—C51.518 (4)
C14—C151.403 (6)C3—H30.9800
C14—H140.9300C4—H4A0.9600
C15—C161.334 (7)C4—H4B0.9600
C15—H150.9300C4—H4C0.9600
C16—C171.353 (8)C5—H5A0.9600
C16—H160.9300C5—H5B0.9600
C17—C181.382 (6)C5—H5C0.9600
C17—H170.9300
O1—C1—O11124.5 (3)N2—C2—C3110.25 (19)
O1—C1—C2125.0 (2)C1—C2—C3113.5 (2)
O11—C1—C2110.5 (2)N2—C2—H2108.6
C1—O11—C12115.9 (2)C1—C2—H2108.6
O11—C12—C13107.6 (3)C3—C2—H2108.6
O11—C12—H12A110.2C2—N2—H2A110.6 (17)
C13—C12—H12A110.2C2—N2—H2B112.0 (16)
O11—C12—H12B110.2H2A—N2—H2B109.2 (19)
C13—C12—H12B110.2C2—N2—H2C109.3 (13)
H12A—C12—H12B108.5H2A—N2—H2C113 (3)
C18—C13—C14120.1 (4)H2B—N2—H2C102 (3)
C18—C13—C12122.4 (3)C4—C3—C5110.8 (3)
C14—C13—C12117.5 (4)C4—C3—C2113.1 (2)
C13—C14—C15118.2 (5)C5—C3—C2112.5 (2)
C13—C14—H14120.9C4—C3—H3106.6
C15—C14—H14120.9C5—C3—H3106.6
C16—C15—C14121.4 (5)C2—C3—H3106.6
C16—C15—H15119.3C3—C4—H4A109.5
C14—C15—H15119.3C3—C4—H4B109.5
C15—C16—C17119.9 (5)H4A—C4—H4B109.5
C15—C16—H16120.0C3—C4—H4C109.5
C17—C16—H16120.0H4A—C4—H4C109.5
C16—C17—C18120.2 (6)H4B—C4—H4C109.5
C16—C17—H17119.9C3—C5—H5A109.5
C18—C17—H17119.9C3—C5—H5B109.5
C13—C18—C17120.1 (4)H5A—C5—H5B109.5
C13—C18—H18119.9C3—C5—H5C109.5
C17—C18—H18119.9H5A—C5—H5C109.5
N2—C2—C1107.1 (2)H5B—C5—H5C109.5
O1—C1—O11—C12−4.1 (4)C12—C13—C18—C17−179.8 (4)
C2—C1—O11—C12175.1 (3)C16—C17—C18—C13−1.8 (7)
C1—O11—C12—C13174.8 (3)O1—C1—C2—N2−25.0 (4)
O11—C12—C13—C1834.5 (5)O11—C1—C2—N2155.9 (2)
O11—C12—C13—C14−147.1 (3)O1—C1—C2—C396.9 (3)
C18—C13—C14—C15−1.1 (6)O11—C1—C2—C3−82.2 (3)
C12—C13—C14—C15−179.5 (4)N2—C2—C3—C462.6 (3)
C13—C14—C15—C160.4 (6)C1—C2—C3—C4−57.6 (3)
C14—C15—C16—C17−0.3 (7)N2—C2—C3—C5−170.9 (3)
C15—C16—C17—C181.1 (8)C1—C2—C3—C569.0 (3)
C14—C13—C18—C171.9 (6)
D—H···AD—HH···AD···AD—H···A
C2—H2···O1i0.982.383.301 (3)157
N2—H2A···Cl1ii1.00 (3)2.26 (4)3.201 (3)156 (2)
N2—H2B···Cl1iii0.90 (3)2.29 (3)3.177 (3)166 (2)
N2—H2C···Cl10.96 (3)2.15 (3)3.101 (2)172.1 (18)
C4—H4C···Cl1iv0.962.953.904 (3)175
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O1i0.982.383.301 (3)157
N2—H2A⋯Cl1ii1.00 (3)2.26 (4)3.201 (3)156 (2)
N2—H2B⋯Cl1iii0.90 (3)2.29 (3)3.177 (3)166 (2)
N2—H2C⋯Cl10.96 (3)2.15 (3)3.101 (2)172.1 (18)
C4—H4C⋯Cl1iv0.962.953.904 (3)175

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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