Literature DB >> 21579740

1-[(Z)-(5-Methyl-2-pyrid-yl)iminiometh-yl]-2-naphtholate.

Xin-Yu Liu1, Yu-Hua Fan, Qiang Wang, Cai-Feng Bi, Yu-Fang Wang.   

Abstract

In the zwitterionic title compound, C(17)H(14)N(2)O, the dihedral angle between the naphthalene and pyridine ring systems is 3.56 (9)° and an intra-molecular N-H⋯O hydrogen bond generates an S(6) ring. In the crystal, mol-ecules are linked by C-H⋯O inter-actions.

Entities:  

Year:  2010        PMID: 21579740      PMCID: PMC2979867          DOI: 10.1107/S1600536810000346

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Eltayeb et al. (2007 ▶).

Experimental

Crystal data

C17H14N2O M = 262.30 Monoclinic, a = 4.8703 (2) Å b = 9.5525 (5) Å c = 14.0804 (6) Å β = 98.353 (2)° V = 648.12 (5) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.47 × 0.10 × 0.09 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.961, T max = 0.992 6930 measured reflections 1660 independent reflections 1321 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.109 S = 0.98 1660 reflections 182 parameters 1 restraint H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.15 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810000346/hb5298sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810000346/hb5298Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H14N2OF(000) = 276
Mr = 262.30Dx = 1.344 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1877 reflections
a = 4.8703 (2) Åθ = 2.6–25.6°
b = 9.5525 (5) ŵ = 0.09 mm1
c = 14.0804 (6) ÅT = 296 K
β = 98.353 (2)°Needle, yellow
V = 648.12 (5) Å30.47 × 0.10 × 0.09 mm
Z = 2
Bruker APEXII CCD diffractometer1660 independent reflections
Radiation source: fine-focus sealed tube1321 reflections with I > 2σ(I)
graphiteRint = 0.029
φ and ω scansθmax = 28.1°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −6→6
Tmin = 0.961, Tmax = 0.992k = −12→11
6930 measured reflectionsl = −18→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H-atom parameters constrained
S = 0.98w = 1/[σ2(Fo2) + (0.062P)2 + 0.0757P] where P = (Fo2 + 2Fc2)/3
1660 reflections(Δ/σ)max < 0.001
182 parametersΔρmax = 0.18 e Å3
1 restraintΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.5458 (5)−0.0508 (3)0.8827 (2)0.0561 (6)
H1A−0.6558−0.07350.82240.084*
H1B−0.6646−0.01780.92660.084*
H1C−0.4484−0.13280.90860.084*
C2−0.3401 (5)0.0616 (2)0.86752 (16)0.0431 (5)
C3−0.2411 (5)0.1558 (3)0.93834 (17)0.0518 (6)
H3−0.30110.15080.99800.062*
C4−0.0533 (5)0.2576 (3)0.92116 (16)0.0492 (6)
H40.01270.32230.96830.059*
C50.0341 (4)0.2610 (2)0.83229 (15)0.0382 (5)
C6−0.2414 (5)0.0762 (3)0.78108 (16)0.0478 (6)
H6−0.30820.01430.73220.057*
C70.3255 (4)0.3752 (2)0.73144 (15)0.0398 (5)
H70.25840.31510.68150.048*
C80.5254 (4)0.4749 (2)0.71574 (15)0.0383 (5)
C90.6227 (4)0.4846 (2)0.62325 (15)0.0371 (5)
C100.5226 (5)0.3996 (3)0.54463 (16)0.0468 (6)
H100.39050.33150.55180.056*
C110.6141 (5)0.4140 (3)0.45734 (16)0.0501 (6)
H110.54230.35660.40640.060*
C120.8133 (5)0.5138 (3)0.44477 (17)0.0525 (6)
H120.87430.52380.38550.063*
C130.9182 (5)0.5968 (3)0.51987 (18)0.0510 (6)
H131.05390.66230.51160.061*
C140.8257 (4)0.5857 (2)0.60997 (16)0.0413 (5)
C150.9323 (5)0.6740 (3)0.68904 (18)0.0499 (6)
H151.06770.73950.68040.060*
C160.8457 (5)0.6663 (3)0.77458 (18)0.0484 (6)
H160.92240.72590.82360.058*
C170.6352 (5)0.5673 (2)0.79247 (16)0.0430 (5)
N1−0.0571 (4)0.1724 (2)0.76194 (13)0.0462 (5)
N20.2284 (4)0.3625 (2)0.81358 (13)0.0424 (4)
H20.28770.42030.85880.051*
O10.5562 (4)0.5643 (2)0.87507 (11)0.0567 (5)
U11U22U33U12U13U23
C10.0517 (14)0.0467 (15)0.0725 (16)−0.0048 (12)0.0176 (12)0.0080 (13)
C20.0391 (10)0.0397 (12)0.0520 (12)0.0037 (10)0.0115 (9)0.0067 (11)
C30.0604 (14)0.0536 (15)0.0459 (12)−0.0031 (13)0.0230 (11)0.0044 (12)
C40.0581 (14)0.0484 (14)0.0438 (12)−0.0078 (12)0.0163 (10)−0.0060 (11)
C50.0403 (10)0.0341 (11)0.0416 (11)0.0036 (9)0.0108 (8)0.0026 (9)
C60.0525 (13)0.0435 (13)0.0478 (12)−0.0049 (11)0.0081 (10)−0.0027 (11)
C70.0436 (11)0.0356 (11)0.0418 (11)0.0025 (9)0.0116 (8)0.0036 (9)
C80.0411 (10)0.0322 (11)0.0429 (11)0.0033 (9)0.0106 (8)0.0024 (9)
C90.0370 (10)0.0337 (11)0.0421 (10)0.0038 (9)0.0103 (8)0.0058 (9)
C100.0496 (13)0.0447 (14)0.0481 (12)−0.0016 (11)0.0136 (10)0.0000 (11)
C110.0555 (14)0.0529 (15)0.0437 (12)0.0054 (12)0.0135 (10)−0.0005 (11)
C120.0590 (14)0.0553 (15)0.0475 (13)0.0092 (12)0.0225 (10)0.0091 (11)
C130.0504 (13)0.0447 (14)0.0615 (15)0.0012 (11)0.0203 (11)0.0108 (12)
C140.0404 (11)0.0356 (12)0.0493 (12)0.0033 (10)0.0113 (9)0.0055 (10)
C150.0486 (12)0.0385 (13)0.0645 (14)−0.0057 (11)0.0145 (10)0.0025 (12)
C160.0508 (13)0.0365 (12)0.0582 (14)−0.0035 (11)0.0086 (10)−0.0055 (11)
C170.0492 (12)0.0356 (12)0.0460 (12)0.0033 (10)0.0125 (9)0.0016 (10)
N10.0536 (11)0.0441 (11)0.0430 (10)−0.0029 (10)0.0146 (8)−0.0014 (9)
N20.0497 (11)0.0370 (10)0.0425 (9)−0.0017 (9)0.0134 (8)−0.0010 (8)
O10.0721 (11)0.0548 (11)0.0463 (9)−0.0073 (10)0.0187 (8)−0.0083 (8)
C1—C21.504 (3)C8—C91.452 (3)
C1—H1A0.9600C9—C101.402 (3)
C1—H1B0.9600C9—C141.413 (3)
C1—H1C0.9600C10—C111.374 (3)
C2—C31.377 (4)C10—H100.9300
C2—C61.379 (3)C11—C121.390 (4)
C3—C41.380 (4)C11—H110.9300
C3—H30.9300C12—C131.360 (4)
C4—C51.379 (3)C12—H120.9300
C4—H40.9300C13—C141.410 (3)
C5—N11.329 (3)C13—H130.9300
C5—N21.407 (3)C14—C151.433 (3)
C6—N11.339 (3)C15—C161.335 (3)
C6—H60.9300C15—H150.9300
C7—N21.317 (3)C16—C171.444 (3)
C7—C81.402 (3)C16—H160.9300
C7—H70.9300C17—O11.277 (3)
C8—C171.436 (3)N2—H20.8600
C2—C1—H1A109.5C14—C9—C8119.20 (19)
C2—C1—H1B109.5C11—C10—C9121.8 (2)
H1A—C1—H1B109.5C11—C10—H10119.1
C2—C1—H1C109.5C9—C10—H10119.1
H1A—C1—H1C109.5C10—C11—C12120.4 (2)
H1B—C1—H1C109.5C10—C11—H11119.8
C3—C2—C6116.3 (2)C12—C11—H11119.8
C3—C2—C1122.3 (2)C13—C12—C11119.4 (2)
C6—C2—C1121.5 (2)C13—C12—H12120.3
C2—C3—C4120.3 (2)C11—C12—H12120.3
C2—C3—H3119.8C12—C13—C14121.5 (2)
C4—C3—H3119.8C12—C13—H13119.3
C5—C4—C3118.4 (2)C14—C13—H13119.3
C5—C4—H4120.8C13—C14—C9119.4 (2)
C3—C4—H4120.8C13—C14—C15121.8 (2)
N1—C5—C4123.2 (2)C9—C14—C15118.72 (19)
N1—C5—N2117.42 (18)C16—C15—C14122.9 (2)
C4—C5—N2119.4 (2)C16—C15—H15118.6
N1—C6—C2125.2 (2)C14—C15—H15118.6
N1—C6—H6117.4C15—C16—C17121.3 (2)
C2—C6—H6117.4C15—C16—H16119.4
N2—C7—C8123.2 (2)C17—C16—H16119.4
N2—C7—H7118.4O1—C17—C8122.9 (2)
C8—C7—H7118.4O1—C17—C16119.3 (2)
C7—C8—C17119.32 (18)C8—C17—C16117.86 (19)
C7—C8—C9120.61 (19)C5—N1—C6116.61 (19)
C17—C8—C9120.07 (19)C7—N2—C5124.41 (19)
C10—C9—C14117.45 (19)C7—N2—H2117.8
C10—C9—C8123.34 (19)C5—N2—H2117.8
C6—C2—C3—C4−0.1 (4)C10—C9—C14—C130.0 (3)
C1—C2—C3—C4−179.7 (2)C8—C9—C14—C13−179.1 (2)
C2—C3—C4—C5−0.8 (4)C10—C9—C14—C15−179.9 (2)
C3—C4—C5—N11.1 (4)C8—C9—C14—C151.0 (3)
C3—C4—C5—N2−179.1 (2)C13—C14—C15—C16179.2 (2)
C3—C2—C6—N10.9 (4)C9—C14—C15—C16−0.9 (4)
C1—C2—C6—N1−179.5 (2)C14—C15—C16—C17−0.3 (4)
N2—C7—C8—C171.0 (3)C7—C8—C17—O1−1.0 (3)
N2—C7—C8—C9−179.45 (19)C9—C8—C17—O1179.5 (2)
C7—C8—C9—C101.4 (3)C7—C8—C17—C16178.5 (2)
C17—C8—C9—C10−179.1 (2)C9—C8—C17—C16−1.1 (3)
C7—C8—C9—C14−179.55 (19)C15—C16—C17—O1−179.3 (2)
C17—C8—C9—C140.0 (3)C15—C16—C17—C81.2 (3)
C14—C9—C10—C11−0.8 (3)C4—C5—N1—C6−0.3 (3)
C8—C9—C10—C11178.3 (2)N2—C5—N1—C6179.8 (2)
C9—C10—C11—C120.6 (4)C2—C6—N1—C5−0.7 (3)
C10—C11—C12—C130.4 (4)C8—C7—N2—C5−178.1 (2)
C11—C12—C13—C14−1.2 (4)N1—C5—N2—C7−0.1 (3)
C12—C13—C14—C91.0 (3)C4—C5—N2—C7−180.0 (2)
C12—C13—C14—C15−179.1 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2···O10.861.892.571 (3)135
C3—H3···O1i0.932.463.346 (3)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O10.861.892.571 (3)135
C3—H3⋯O1i0.932.463.346 (3)159

Symmetry code: (i) .

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