| Literature DB >> 21579727 |
Jia Hao Goh, Hoong-Kun Fun, M Babu, B Kalluraya.
Abstract
STRUCTURAL STUDIES OF THE TITLE COMPOUND [SYSTEMATIC NAME: 2,2'-(disulfanedi-yl)dianiline], C(12)H(12)N(2)S(2), were previously performed at room temperature [Gomes de Mesquita (1967 ▶). Acta Cryst.23, 671; Lee & Bryant (1970 ▶). Acta Cryst. B26, 1729; Ribar et al. (1975 ▶). Bull. Yugoslav. Crystallogr. Centre, A10, 68]. The results of the current redetermination allow a clarification of the nature of the intra- and inter-molecular N-H⋯S hydrogen bonding described in the literature for this compound. On cooling to 100 K, the unit cell contracts most in the c axis, and it changes rather less in the directions involving the strongly hydrogen-bonded chains, which are the a and b axes. In the crystal structure, N-H⋯N hydrogen bonds link neighbouring mol-ecules into two-dimensional frameworks parallel to the ab plane. An additional inter-molecular N-H⋯S hydrogen bond has also been established, based on freely refined H-atom positions. Inter-molecular C-H⋯π inter-actions further stabilize the crystal structure.Entities:
Year: 2010 PMID: 21579727 PMCID: PMC2979978 DOI: 10.1107/S1600536810000024
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H12N2S2 | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 9179 reflections |
| θ = 3.1–29.9° | |
| µ = 0.42 mm−1 | |
| Block, yellow | |
| 0.23 × 0.18 × 0.17 mm |
| Bruker SMART APEXII CCD area-detector diffractometer | 2750 independent reflections |
| Radiation source: fine-focus sealed tube | 2417 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.5°, θmin = 3.1° |
| Absorption correction: multi-scan ( | |
| 47724 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| All H-atom parameters refined | |
| 2750 reflections | (Δ/σ)max < 0.001 |
| 193 parameters | Δρmax = 0.50 e Å−3 |
| 0 restraints | Δρmin = −0.43 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| S1 | 0.02244 (8) | 0.44246 (5) | 0.29158 (3) | 0.02175 (17) | |
| S2 | −0.18075 (7) | 0.49532 (5) | 0.33614 (3) | 0.01897 (17) | |
| N1 | 0.1434 (3) | 0.65943 (19) | 0.27327 (11) | 0.0261 (5) | |
| N2 | −0.3466 (3) | 0.28926 (19) | 0.32376 (10) | 0.0226 (5) | |
| C1 | 0.2321 (3) | 0.6022 (2) | 0.31445 (12) | 0.0208 (5) | |
| C2 | 0.3664 (3) | 0.6450 (2) | 0.34391 (13) | 0.0267 (6) | |
| C3 | 0.4491 (3) | 0.5893 (2) | 0.38682 (14) | 0.0308 (7) | |
| C4 | 0.4032 (3) | 0.4902 (2) | 0.40210 (13) | 0.0287 (6) | |
| C5 | 0.2712 (3) | 0.4467 (2) | 0.37320 (12) | 0.0233 (5) | |
| C6 | 0.1857 (3) | 0.5017 (2) | 0.32969 (11) | 0.0193 (5) | |
| C7 | −0.2077 (3) | 0.40351 (19) | 0.39331 (11) | 0.0171 (5) | |
| C8 | −0.1543 (3) | 0.4247 (2) | 0.45123 (12) | 0.0220 (5) | |
| C9 | −0.1837 (3) | 0.3567 (2) | 0.49755 (12) | 0.0275 (6) | |
| C10 | −0.2661 (4) | 0.2664 (2) | 0.48554 (13) | 0.0295 (6) | |
| C11 | −0.3206 (3) | 0.2437 (2) | 0.42842 (13) | 0.0251 (6) | |
| C12 | −0.2934 (3) | 0.31171 (19) | 0.38114 (11) | 0.0190 (5) | |
| H2A | 0.402 (4) | 0.715 (3) | 0.3335 (14) | 0.034 (9)* | |
| H3A | 0.536 (4) | 0.621 (3) | 0.4078 (15) | 0.038 (9)* | |
| H4A | 0.457 (4) | 0.451 (3) | 0.4337 (15) | 0.033 (9)* | |
| H5A | 0.240 (4) | 0.379 (2) | 0.3819 (13) | 0.025 (8)* | |
| H8A | −0.100 (4) | 0.492 (2) | 0.4590 (14) | 0.027 (8)* | |
| H9A | −0.153 (4) | 0.373 (2) | 0.5377 (14) | 0.022 (8)* | |
| H10A | −0.285 (4) | 0.219 (3) | 0.5158 (14) | 0.030 (9)* | |
| H11A | −0.374 (4) | 0.179 (3) | 0.4193 (14) | 0.029 (8)* | |
| H1N1 | 0.199 (5) | 0.706 (3) | 0.2542 (18) | 0.048 (11)* | |
| H2N1 | 0.083 (5) | 0.620 (3) | 0.2483 (16) | 0.040 (10)* | |
| H1N2 | −0.422 (5) | 0.244 (3) | 0.3209 (15) | 0.037 (9)* | |
| H2N2 | −0.362 (4) | 0.343 (3) | 0.3004 (14) | 0.025 (8)* |
| S1 | 0.0167 (3) | 0.0245 (3) | 0.0240 (3) | −0.0045 (2) | 0.0039 (2) | −0.0044 (3) |
| S2 | 0.0123 (3) | 0.0188 (3) | 0.0258 (3) | −0.0004 (2) | 0.0000 (2) | 0.0029 (2) |
| N1 | 0.0241 (12) | 0.0220 (12) | 0.0321 (13) | 0.0011 (10) | 0.0068 (10) | 0.0039 (10) |
| N2 | 0.0204 (11) | 0.0205 (11) | 0.0268 (12) | −0.0038 (9) | −0.0012 (9) | −0.0006 (9) |
| C1 | 0.0160 (12) | 0.0212 (12) | 0.0253 (12) | 0.0025 (10) | 0.0079 (10) | −0.0026 (10) |
| C2 | 0.0163 (12) | 0.0258 (14) | 0.0381 (15) | −0.0049 (11) | 0.0101 (11) | −0.0089 (12) |
| C3 | 0.0112 (12) | 0.0430 (17) | 0.0382 (16) | −0.0015 (12) | 0.0018 (11) | −0.0154 (13) |
| C4 | 0.0152 (12) | 0.0395 (17) | 0.0313 (15) | 0.0069 (11) | 0.0002 (11) | −0.0045 (13) |
| C5 | 0.0185 (12) | 0.0235 (13) | 0.0278 (13) | 0.0035 (10) | 0.0050 (10) | −0.0007 (11) |
| C6 | 0.0140 (11) | 0.0219 (12) | 0.0220 (12) | −0.0008 (9) | 0.0057 (9) | −0.0013 (10) |
| C7 | 0.0100 (11) | 0.0188 (12) | 0.0225 (12) | 0.0029 (9) | 0.0026 (9) | 0.0022 (9) |
| C8 | 0.0144 (12) | 0.0275 (14) | 0.0242 (13) | 0.0028 (10) | −0.0004 (10) | −0.0030 (10) |
| C9 | 0.0211 (13) | 0.0400 (17) | 0.0214 (13) | 0.0066 (12) | 0.0004 (10) | 0.0007 (12) |
| C10 | 0.0278 (14) | 0.0325 (16) | 0.0282 (14) | 0.0090 (12) | 0.0086 (12) | 0.0095 (12) |
| C11 | 0.0214 (13) | 0.0206 (13) | 0.0333 (14) | 0.0022 (11) | 0.0068 (11) | 0.0029 (11) |
| C12 | 0.0114 (11) | 0.0212 (12) | 0.0244 (12) | 0.0028 (9) | 0.0038 (9) | −0.0009 (10) |
| S1—C6 | 1.771 (3) | C4—C5 | 1.388 (4) |
| S1—S2 | 2.0687 (9) | C4—H4A | 0.97 (3) |
| S2—C7 | 1.765 (3) | C5—C6 | 1.400 (4) |
| N1—C1 | 1.392 (4) | C5—H5A | 0.94 (3) |
| N1—H1N1 | 0.87 (4) | C7—C8 | 1.396 (4) |
| N1—H2N1 | 0.91 (4) | C7—C12 | 1.416 (3) |
| N2—C12 | 1.388 (3) | C8—C9 | 1.384 (4) |
| N2—H1N2 | 0.86 (4) | C8—H8A | 1.00 (3) |
| N2—H2N2 | 0.88 (3) | C9—C10 | 1.386 (4) |
| C1—C2 | 1.405 (4) | C9—H9A | 0.96 (3) |
| C1—C6 | 1.407 (4) | C10—C11 | 1.386 (4) |
| C2—C3 | 1.383 (4) | C10—H10A | 0.93 (3) |
| C2—H2A | 0.98 (3) | C11—C12 | 1.397 (4) |
| C3—C4 | 1.388 (4) | C11—H11A | 0.97 (3) |
| C3—H3A | 0.95 (4) | ||
| C6—S1—S2 | 103.87 (9) | C6—C5—H5A | 119 (2) |
| C7—S2—S1 | 103.05 (8) | C5—C6—C1 | 120.5 (2) |
| C1—N1—H1N1 | 115 (3) | C5—C6—S1 | 119.7 (2) |
| C1—N1—H2N1 | 113 (2) | C1—C6—S1 | 119.8 (2) |
| H1N1—N1—H2N1 | 112 (3) | C8—C7—C12 | 120.2 (2) |
| C12—N2—H1N2 | 116 (2) | C8—C7—S2 | 119.9 (2) |
| C12—N2—H2N2 | 115 (2) | C12—C7—S2 | 119.74 (19) |
| H1N2—N2—H2N2 | 113 (3) | C9—C8—C7 | 120.9 (3) |
| N1—C1—C2 | 120.8 (3) | C9—C8—H8A | 120.6 (18) |
| N1—C1—C6 | 121.0 (2) | C7—C8—H8A | 118.4 (18) |
| C2—C1—C6 | 118.1 (3) | C8—C9—C10 | 119.0 (3) |
| C3—C2—C1 | 120.4 (3) | C8—C9—H9A | 121.3 (18) |
| C3—C2—H2A | 120 (2) | C10—C9—H9A | 119.7 (18) |
| C1—C2—H2A | 119 (2) | C9—C10—C11 | 121.2 (3) |
| C2—C3—C4 | 121.6 (3) | C9—C10—H10A | 121 (2) |
| C2—C3—H3A | 119 (2) | C11—C10—H10A | 118 (2) |
| C4—C3—H3A | 119 (2) | C10—C11—C12 | 120.7 (3) |
| C5—C4—C3 | 118.7 (3) | C10—C11—H11A | 121.7 (19) |
| C5—C4—H4A | 119 (2) | C12—C11—H11A | 117.6 (19) |
| C3—C4—H4A | 122 (2) | N2—C12—C11 | 121.0 (2) |
| C4—C5—C6 | 120.7 (3) | N2—C12—C7 | 120.9 (2) |
| C4—C5—H5A | 120 (2) | C11—C12—C7 | 118.0 (2) |
| C6—S1—S2—C7 | −89.29 (13) | S1—S2—C7—C8 | 99.8 (2) |
| N1—C1—C2—C3 | 176.9 (2) | S1—S2—C7—C12 | −84.50 (19) |
| C6—C1—C2—C3 | −0.4 (4) | C12—C7—C8—C9 | 0.1 (4) |
| C1—C2—C3—C4 | 0.1 (4) | S2—C7—C8—C9 | 175.7 (2) |
| C2—C3—C4—C5 | 0.2 (4) | C7—C8—C9—C10 | 0.6 (4) |
| C3—C4—C5—C6 | −0.3 (4) | C8—C9—C10—C11 | −0.7 (4) |
| C4—C5—C6—C1 | 0.0 (4) | C9—C10—C11—C12 | 0.1 (4) |
| C4—C5—C6—S1 | 177.7 (2) | C10—C11—C12—N2 | 179.6 (3) |
| N1—C1—C6—C5 | −177.0 (2) | C10—C11—C12—C7 | 0.5 (4) |
| C2—C1—C6—C5 | 0.3 (4) | C8—C7—C12—N2 | −179.7 (2) |
| N1—C1—C6—S1 | 5.4 (3) | S2—C7—C12—N2 | 4.7 (3) |
| C2—C1—C6—S1 | −177.36 (19) | C8—C7—C12—C11 | −0.6 (3) |
| S2—S1—C6—C5 | 98.6 (2) | S2—C7—C12—C11 | −176.27 (19) |
| S2—S1—C6—C1 | −83.8 (2) |
| Cg1 and Cg2 are the centroids for C7–C12 and C1–C16 phenyl rings, respectively. |
| H··· | ||||
| N1—H1N1···N2i | 0.87 (4) | 2.39 (4) | 3.222 (3) | 160 (4) |
| N2—H1N2···N1ii | 0.86 (4) | 2.39 (4) | 3.184 (3) | 155 (3) |
| N2—H2N2···S1iii | 0.88 (4) | 2.61 (3) | 3.436 (2) | 156 (3) |
| C4—H4A···Cg1iv | 0.97 (3) | 2.95 (3) | 3.689 (3) | 134 (2) |
| C9—H9A···Cg2v | 0.96 (3) | 2.89 (3) | 3.637 (3) | 135 (2) |
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 are the centroids of the C7–C12 and C1–C16 phenyl rings, respectively.
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.87 (4) | 2.39 (4) | 3.222 (3) | 160 (4) |
| N2—H1 | 0.86 (4) | 2.39 (4) | 3.184 (3) | 155 (3) |
| N2—H2 | 0.88 (4) | 2.61 (3) | 3.436 (2) | 156 (3) |
| C4—H4 | 0.97 (3) | 2.95 (3) | 3.689 (3) | 134 (2) |
| C9—H9 | 0.96 (3) | 2.89 (3) | 3.637 (3) | 135 (2) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .