Literature DB >> 21579727

2,2'-Dithio-dianiline: a redetermination at 100 K.

Jia Hao Goh, Hoong-Kun Fun, M Babu, B Kalluraya.   

Abstract

STRUCTURAL STUDIES OF THE TITLE COMPOUND [SYSTEMATIC NAME: 2,2'-(disulfanedi-yl)dianiline], C(12)H(12)N(2)S(2), were previously performed at room temperature [Gomes de Mesquita (1967 ▶). Acta Cryst.23, 671; Lee & Bryant (1970 ▶). Acta Cryst. B26, 1729; Ribar et al. (1975 ▶). Bull. Yugoslav. Crystallogr. Centre, A10, 68]. The results of the current redetermination allow a clarification of the nature of the intra- and inter-molecular N-H⋯S hydrogen bonding described in the literature for this compound. On cooling to 100 K, the unit cell contracts most in the c axis, and it changes rather less in the directions involving the strongly hydrogen-bonded chains, which are the a and b axes. In the crystal structure, N-H⋯N hydrogen bonds link neighbouring mol-ecules into two-dimensional frameworks parallel to the ab plane. An additional inter-molecular N-H⋯S hydrogen bond has also been established, based on freely refined H-atom positions. Inter-molecular C-H⋯π inter-actions further stabilize the crystal structure.

Entities:  

Year:  2010        PMID: 21579727      PMCID: PMC2979978          DOI: 10.1107/S1600536810000024

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For previously reported structure determinations of the title compound, see: Gomes de Mesquita (1967 ▶); Lee & Bryant (1970 ▶); Ribar et al. (1975 ▶). For general background to and applications of the title compound, see: Garbarczyk et al. (1999 ▶); Kalluraya et al. (2000 ▶); Kalluraya & Chimbalkar (2001 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C12H12N2S2 M = 248.36 Orthorhombic, a = 8.2531 (1) Å b = 13.0278 (2) Å c = 22.3655 (4) Å V = 2404.73 (6) Å3 Z = 8 Mo Kα radiation μ = 0.42 mm−1 T = 100 K 0.23 × 0.18 × 0.17 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.912, T max = 0.934 47724 measured reflections 2750 independent reflections 2417 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.124 S = 1.19 2750 reflections 193 parameters All H-atom parameters refined Δρmax = 0.50 e Å−3 Δρmin = −0.43 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810000024/tk2598sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810000024/tk2598Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N2S2F(000) = 1040
Mr = 248.36Dx = 1.372 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 9179 reflections
a = 8.2531 (1) Åθ = 3.1–29.9°
b = 13.0278 (2) ŵ = 0.42 mm1
c = 22.3655 (4) ÅT = 100 K
V = 2404.73 (6) Å3Block, yellow
Z = 80.23 × 0.18 × 0.17 mm
Bruker SMART APEXII CCD area-detector diffractometer2750 independent reflections
Radiation source: fine-focus sealed tube2417 reflections with I > 2σ(I)
graphiteRint = 0.040
φ and ω scansθmax = 27.5°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→10
Tmin = 0.912, Tmax = 0.934k = −16→16
47724 measured reflectionsl = −29→29
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124All H-atom parameters refined
S = 1.19w = 1/[σ2(Fo2) + (0.0383P)2 + 5.2113P] where P = (Fo2 + 2Fc2)/3
2750 reflections(Δ/σ)max < 0.001
193 parametersΔρmax = 0.50 e Å3
0 restraintsΔρmin = −0.43 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.02244 (8)0.44246 (5)0.29158 (3)0.02175 (17)
S2−0.18075 (7)0.49532 (5)0.33614 (3)0.01897 (17)
N10.1434 (3)0.65943 (19)0.27327 (11)0.0261 (5)
N2−0.3466 (3)0.28926 (19)0.32376 (10)0.0226 (5)
C10.2321 (3)0.6022 (2)0.31445 (12)0.0208 (5)
C20.3664 (3)0.6450 (2)0.34391 (13)0.0267 (6)
C30.4491 (3)0.5893 (2)0.38682 (14)0.0308 (7)
C40.4032 (3)0.4902 (2)0.40210 (13)0.0287 (6)
C50.2712 (3)0.4467 (2)0.37320 (12)0.0233 (5)
C60.1857 (3)0.5017 (2)0.32969 (11)0.0193 (5)
C7−0.2077 (3)0.40351 (19)0.39331 (11)0.0171 (5)
C8−0.1543 (3)0.4247 (2)0.45123 (12)0.0220 (5)
C9−0.1837 (3)0.3567 (2)0.49755 (12)0.0275 (6)
C10−0.2661 (4)0.2664 (2)0.48554 (13)0.0295 (6)
C11−0.3206 (3)0.2437 (2)0.42842 (13)0.0251 (6)
C12−0.2934 (3)0.31171 (19)0.38114 (11)0.0190 (5)
H2A0.402 (4)0.715 (3)0.3335 (14)0.034 (9)*
H3A0.536 (4)0.621 (3)0.4078 (15)0.038 (9)*
H4A0.457 (4)0.451 (3)0.4337 (15)0.033 (9)*
H5A0.240 (4)0.379 (2)0.3819 (13)0.025 (8)*
H8A−0.100 (4)0.492 (2)0.4590 (14)0.027 (8)*
H9A−0.153 (4)0.373 (2)0.5377 (14)0.022 (8)*
H10A−0.285 (4)0.219 (3)0.5158 (14)0.030 (9)*
H11A−0.374 (4)0.179 (3)0.4193 (14)0.029 (8)*
H1N10.199 (5)0.706 (3)0.2542 (18)0.048 (11)*
H2N10.083 (5)0.620 (3)0.2483 (16)0.040 (10)*
H1N2−0.422 (5)0.244 (3)0.3209 (15)0.037 (9)*
H2N2−0.362 (4)0.343 (3)0.3004 (14)0.025 (8)*
U11U22U33U12U13U23
S10.0167 (3)0.0245 (3)0.0240 (3)−0.0045 (2)0.0039 (2)−0.0044 (3)
S20.0123 (3)0.0188 (3)0.0258 (3)−0.0004 (2)0.0000 (2)0.0029 (2)
N10.0241 (12)0.0220 (12)0.0321 (13)0.0011 (10)0.0068 (10)0.0039 (10)
N20.0204 (11)0.0205 (11)0.0268 (12)−0.0038 (9)−0.0012 (9)−0.0006 (9)
C10.0160 (12)0.0212 (12)0.0253 (12)0.0025 (10)0.0079 (10)−0.0026 (10)
C20.0163 (12)0.0258 (14)0.0381 (15)−0.0049 (11)0.0101 (11)−0.0089 (12)
C30.0112 (12)0.0430 (17)0.0382 (16)−0.0015 (12)0.0018 (11)−0.0154 (13)
C40.0152 (12)0.0395 (17)0.0313 (15)0.0069 (11)0.0002 (11)−0.0045 (13)
C50.0185 (12)0.0235 (13)0.0278 (13)0.0035 (10)0.0050 (10)−0.0007 (11)
C60.0140 (11)0.0219 (12)0.0220 (12)−0.0008 (9)0.0057 (9)−0.0013 (10)
C70.0100 (11)0.0188 (12)0.0225 (12)0.0029 (9)0.0026 (9)0.0022 (9)
C80.0144 (12)0.0275 (14)0.0242 (13)0.0028 (10)−0.0004 (10)−0.0030 (10)
C90.0211 (13)0.0400 (17)0.0214 (13)0.0066 (12)0.0004 (10)0.0007 (12)
C100.0278 (14)0.0325 (16)0.0282 (14)0.0090 (12)0.0086 (12)0.0095 (12)
C110.0214 (13)0.0206 (13)0.0333 (14)0.0022 (11)0.0068 (11)0.0029 (11)
C120.0114 (11)0.0212 (12)0.0244 (12)0.0028 (9)0.0038 (9)−0.0009 (10)
S1—C61.771 (3)C4—C51.388 (4)
S1—S22.0687 (9)C4—H4A0.97 (3)
S2—C71.765 (3)C5—C61.400 (4)
N1—C11.392 (4)C5—H5A0.94 (3)
N1—H1N10.87 (4)C7—C81.396 (4)
N1—H2N10.91 (4)C7—C121.416 (3)
N2—C121.388 (3)C8—C91.384 (4)
N2—H1N20.86 (4)C8—H8A1.00 (3)
N2—H2N20.88 (3)C9—C101.386 (4)
C1—C21.405 (4)C9—H9A0.96 (3)
C1—C61.407 (4)C10—C111.386 (4)
C2—C31.383 (4)C10—H10A0.93 (3)
C2—H2A0.98 (3)C11—C121.397 (4)
C3—C41.388 (4)C11—H11A0.97 (3)
C3—H3A0.95 (4)
C6—S1—S2103.87 (9)C6—C5—H5A119 (2)
C7—S2—S1103.05 (8)C5—C6—C1120.5 (2)
C1—N1—H1N1115 (3)C5—C6—S1119.7 (2)
C1—N1—H2N1113 (2)C1—C6—S1119.8 (2)
H1N1—N1—H2N1112 (3)C8—C7—C12120.2 (2)
C12—N2—H1N2116 (2)C8—C7—S2119.9 (2)
C12—N2—H2N2115 (2)C12—C7—S2119.74 (19)
H1N2—N2—H2N2113 (3)C9—C8—C7120.9 (3)
N1—C1—C2120.8 (3)C9—C8—H8A120.6 (18)
N1—C1—C6121.0 (2)C7—C8—H8A118.4 (18)
C2—C1—C6118.1 (3)C8—C9—C10119.0 (3)
C3—C2—C1120.4 (3)C8—C9—H9A121.3 (18)
C3—C2—H2A120 (2)C10—C9—H9A119.7 (18)
C1—C2—H2A119 (2)C9—C10—C11121.2 (3)
C2—C3—C4121.6 (3)C9—C10—H10A121 (2)
C2—C3—H3A119 (2)C11—C10—H10A118 (2)
C4—C3—H3A119 (2)C10—C11—C12120.7 (3)
C5—C4—C3118.7 (3)C10—C11—H11A121.7 (19)
C5—C4—H4A119 (2)C12—C11—H11A117.6 (19)
C3—C4—H4A122 (2)N2—C12—C11121.0 (2)
C4—C5—C6120.7 (3)N2—C12—C7120.9 (2)
C4—C5—H5A120 (2)C11—C12—C7118.0 (2)
C6—S1—S2—C7−89.29 (13)S1—S2—C7—C899.8 (2)
N1—C1—C2—C3176.9 (2)S1—S2—C7—C12−84.50 (19)
C6—C1—C2—C3−0.4 (4)C12—C7—C8—C90.1 (4)
C1—C2—C3—C40.1 (4)S2—C7—C8—C9175.7 (2)
C2—C3—C4—C50.2 (4)C7—C8—C9—C100.6 (4)
C3—C4—C5—C6−0.3 (4)C8—C9—C10—C11−0.7 (4)
C4—C5—C6—C10.0 (4)C9—C10—C11—C120.1 (4)
C4—C5—C6—S1177.7 (2)C10—C11—C12—N2179.6 (3)
N1—C1—C6—C5−177.0 (2)C10—C11—C12—C70.5 (4)
C2—C1—C6—C50.3 (4)C8—C7—C12—N2−179.7 (2)
N1—C1—C6—S15.4 (3)S2—C7—C12—N24.7 (3)
C2—C1—C6—S1−177.36 (19)C8—C7—C12—C11−0.6 (3)
S2—S1—C6—C598.6 (2)S2—C7—C12—C11−176.27 (19)
S2—S1—C6—C1−83.8 (2)
Cg1 and Cg2 are the centroids for C7–C12 and C1–C16 phenyl rings, respectively.
D—H···AD—HH···AD···AD—H···A
N1—H1N1···N2i0.87 (4)2.39 (4)3.222 (3)160 (4)
N2—H1N2···N1ii0.86 (4)2.39 (4)3.184 (3)155 (3)
N2—H2N2···S1iii0.88 (4)2.61 (3)3.436 (2)156 (3)
C4—H4A···Cg1iv0.97 (3)2.95 (3)3.689 (3)134 (2)
C9—H9A···Cg2v0.96 (3)2.89 (3)3.637 (3)135 (2)
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C7–C12 and C1–C16 phenyl rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯N2i0.87 (4)2.39 (4)3.222 (3)160 (4)
N2—H1N2⋯N1ii0.86 (4)2.39 (4)3.184 (3)155 (3)
N2—H2N2⋯S1iii0.88 (4)2.61 (3)3.436 (2)156 (3)
C4—H4ACg1iv0.97 (3)2.95 (3)3.689 (3)134 (2)
C9—H9ACg2v0.96 (3)2.89 (3)3.637 (3)135 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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1.  2,2'-(Disulfanedi-yl)dianilinium dichloride dihydrate.

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