Literature DB >> 21579720

4-[4-(Piperidin-1-yl)piperidin-1-yl]benzonitrile.

Guo-Bin Xu1, Jian-You Shi, Li-Juan Chen, You-Fu Luo.   

Abstract

In the title compound, C(17)H(23)N(3), both piperidine rings adopt chair conformations. In the crystal packing, intermolecular C-H⋯N hydrogen bonds and C-H⋯π interactions are present.

Entities:  

Year:  2010        PMID: 21579720      PMCID: PMC2979720          DOI: 10.1107/S160053680905507X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Pevarello et al. (2006 ▶).

Experimental

Crystal data

C17H23N3 M = 269.38 Monoclinic, a = 10.090 (2) Å b = 11.100 (2) Å c = 13.446 (3) Å β = 100.72 (3)° V = 1479.7 (5) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 113 K 0.26 × 0.25 × 0.20 mm

Data collection

Rigaku Saturn CCD area-detector diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005 ▶) T min = 0.981, T max = 0.986 11970 measured reflections 3500 independent reflections 2749 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.111 S = 1.12 3500 reflections 182 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ChemBioDraw Ultra CambridgeSoft (2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680905507X/kp2240sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680905507X/kp2240Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H23N3F(000) = 584
Mr = 269.38Dx = 1.209 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4488 reflections
a = 10.090 (2) Åθ = 2.7–27.9°
b = 11.100 (2) ŵ = 0.07 mm1
c = 13.446 (3) ÅT = 113 K
β = 100.72 (3)°Block, red
V = 1479.7 (5) Å30.26 × 0.25 × 0.20 mm
Z = 4
Rigaku Saturn CCD area-detector diffractometer3500 independent reflections
Radiation source: rotating anode2749 reflections with I > 2σ(I)
confocalRint = 0.032
Detector resolution: 7.31 pixels mm-1θmax = 27.9°, θmin = 2.8°
ω and φ scansh = −13→10
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005)k = −14→14
Tmin = 0.981, Tmax = 0.986l = −17→17
11970 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.111w = 1/[σ2(Fo2) + (0.0612P)2 + 0.0668P] where P = (Fo2 + 2Fc2)/3
S = 1.12(Δ/σ)max < 0.001
3500 reflectionsΔρmax = 0.27 e Å3
182 parametersΔρmin = −0.19 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.033 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.19321 (8)0.59022 (8)0.73578 (6)0.0193 (2)
N20.26675 (8)0.49828 (7)0.43659 (6)0.0187 (2)
N30.48688 (9)0.35177 (8)0.00345 (7)0.0256 (2)
C10.21163 (10)0.49931 (10)0.81631 (8)0.0225 (2)
H1A0.30690.47270.83040.027*
H1B0.15470.42830.79340.027*
C20.17411 (11)0.54896 (10)0.91273 (8)0.0270 (3)
H2A0.23630.61540.93910.032*
H2B0.18390.48480.96470.032*
C30.02945 (11)0.59541 (11)0.89283 (9)0.0310 (3)
H3A−0.03390.52700.87680.037*
H3B0.01020.63600.95420.037*
C40.00956 (11)0.68349 (11)0.80492 (9)0.0307 (3)
H4A0.06380.75690.82490.037*
H4B−0.08650.70740.78810.037*
C50.05156 (10)0.62790 (11)0.71205 (8)0.0274 (3)
H5A−0.00620.55730.68940.033*
H5B0.03920.68750.65630.033*
C60.24849 (10)0.54949 (9)0.64737 (8)0.0182 (2)
H60.34480.52720.67330.022*
C70.18209 (10)0.43925 (9)0.59102 (8)0.0205 (2)
H7A0.18160.37210.63940.025*
H7B0.08730.45840.56080.025*
C80.25693 (10)0.40038 (9)0.50799 (8)0.0204 (2)
H8A0.34880.37340.53910.024*
H8B0.20930.33130.47080.024*
C90.32454 (11)0.60897 (9)0.48736 (8)0.0224 (2)
H9A0.32060.67420.43660.027*
H9B0.42060.59480.51720.027*
C100.25036 (11)0.64891 (9)0.56997 (8)0.0229 (2)
H10A0.15660.67110.53940.027*
H10B0.29510.72110.60420.027*
C110.31345 (9)0.46754 (9)0.34801 (7)0.0179 (2)
C120.32252 (10)0.55520 (9)0.27405 (8)0.0209 (2)
H120.29760.63600.28490.025*
C130.36689 (10)0.52613 (9)0.18606 (8)0.0212 (2)
H130.37270.58700.13740.025*
C140.40341 (10)0.40774 (9)0.16801 (8)0.0182 (2)
C150.39452 (10)0.31974 (9)0.24037 (8)0.0203 (2)
H150.41910.23900.22890.024*
C160.35023 (10)0.34886 (9)0.32857 (8)0.0205 (2)
H160.34450.28760.37700.025*
C170.45003 (10)0.37726 (9)0.07679 (8)0.0200 (2)
U11U22U33U12U13U23
N10.0189 (4)0.0234 (5)0.0162 (4)0.0020 (3)0.0049 (3)−0.0006 (3)
N20.0253 (4)0.0146 (4)0.0169 (4)−0.0026 (3)0.0060 (3)−0.0002 (3)
N30.0337 (5)0.0195 (5)0.0252 (5)−0.0013 (4)0.0101 (4)−0.0025 (4)
C10.0240 (5)0.0248 (5)0.0194 (5)0.0000 (4)0.0053 (4)0.0015 (4)
C20.0287 (6)0.0343 (6)0.0190 (6)−0.0034 (5)0.0071 (4)−0.0014 (5)
C30.0272 (6)0.0414 (7)0.0273 (6)−0.0046 (5)0.0127 (5)−0.0073 (5)
C40.0237 (5)0.0400 (7)0.0300 (6)0.0065 (5)0.0085 (5)−0.0051 (5)
C50.0215 (5)0.0370 (6)0.0237 (6)0.0071 (5)0.0044 (4)−0.0020 (5)
C60.0183 (5)0.0197 (5)0.0170 (5)0.0005 (4)0.0045 (4)−0.0008 (4)
C70.0226 (5)0.0200 (5)0.0196 (5)−0.0024 (4)0.0058 (4)0.0011 (4)
C80.0272 (5)0.0160 (5)0.0189 (5)−0.0022 (4)0.0069 (4)0.0008 (4)
C90.0287 (5)0.0187 (5)0.0210 (5)−0.0062 (4)0.0076 (4)−0.0031 (4)
C100.0315 (6)0.0177 (5)0.0212 (6)−0.0024 (4)0.0094 (4)−0.0023 (4)
C110.0178 (5)0.0183 (5)0.0170 (5)−0.0011 (4)0.0018 (4)−0.0009 (4)
C120.0263 (5)0.0161 (5)0.0209 (5)0.0028 (4)0.0059 (4)0.0000 (4)
C130.0268 (5)0.0187 (5)0.0185 (5)0.0012 (4)0.0054 (4)0.0027 (4)
C140.0196 (5)0.0181 (5)0.0171 (5)−0.0009 (4)0.0033 (4)−0.0014 (4)
C150.0238 (5)0.0164 (5)0.0205 (6)0.0007 (4)0.0033 (4)−0.0017 (4)
C160.0253 (5)0.0170 (5)0.0187 (5)−0.0007 (4)0.0031 (4)0.0011 (4)
C170.0236 (5)0.0145 (5)0.0216 (6)−0.0012 (4)0.0038 (4)0.0000 (4)
N1—C51.4663 (13)C6—H61.0000
N1—C11.4664 (13)C7—C81.5219 (14)
N1—C61.4749 (13)C7—H7A0.9900
N2—C111.4020 (13)C7—H7B0.9900
N2—C81.4656 (13)C8—H8A0.9900
N2—C91.4723 (13)C8—H8B0.9900
N3—C171.1520 (13)C9—C101.5164 (14)
C1—C21.5200 (14)C9—H9A0.9900
C1—H1A0.9900C9—H9B0.9900
C1—H1B0.9900C10—H10A0.9900
C2—C31.5241 (16)C10—H10B0.9900
C2—H2A0.9900C11—C161.4063 (14)
C2—H2B0.9900C11—C121.4064 (14)
C3—C41.5183 (17)C12—C131.3788 (14)
C3—H3A0.9900C12—H120.9500
C3—H3B0.9900C13—C141.3981 (14)
C4—C51.5220 (15)C13—H130.9500
C4—H4A0.9900C14—C151.3933 (14)
C4—H4B0.9900C14—C171.4335 (14)
C5—H5A0.9900C15—C161.3811 (14)
C5—H5B0.9900C15—H150.9500
C6—C101.5195 (14)C16—H160.9500
C6—C71.5269 (14)
C5—N1—C1109.98 (8)C8—C7—H7A109.4
C5—N1—C6114.29 (8)C6—C7—H7A109.4
C1—N1—C6111.67 (8)C8—C7—H7B109.4
C11—N2—C8116.77 (8)C6—C7—H7B109.4
C11—N2—C9115.49 (8)H7A—C7—H7B108.0
C8—N2—C9112.59 (8)N2—C8—C7111.93 (8)
N1—C1—C2111.27 (9)N2—C8—H8A109.2
N1—C1—H1A109.4C7—C8—H8A109.2
C2—C1—H1A109.4N2—C8—H8B109.2
N1—C1—H1B109.4C7—C8—H8B109.2
C2—C1—H1B109.4H8A—C8—H8B107.9
H1A—C1—H1B108.0N2—C9—C10112.14 (8)
C1—C2—C3110.81 (9)N2—C9—H9A109.2
C1—C2—H2A109.5C10—C9—H9A109.2
C3—C2—H2A109.5N2—C9—H9B109.2
C1—C2—H2B109.5C10—C9—H9B109.2
C3—C2—H2B109.5H9A—C9—H9B107.9
H2A—C2—H2B108.1C9—C10—C6111.10 (8)
C4—C3—C2109.76 (9)C9—C10—H10A109.4
C4—C3—H3A109.7C6—C10—H10A109.4
C2—C3—H3A109.7C9—C10—H10B109.4
C4—C3—H3B109.7C6—C10—H10B109.4
C2—C3—H3B109.7H10A—C10—H10B108.0
H3A—C3—H3B108.2N2—C11—C16121.86 (9)
C3—C4—C5111.16 (10)N2—C11—C12120.57 (9)
C3—C4—H4A109.4C16—C11—C12117.55 (9)
C5—C4—H4A109.4C13—C12—C11121.27 (9)
C3—C4—H4B109.4C13—C12—H12119.4
C5—C4—H4B109.4C11—C12—H12119.4
H4A—C4—H4B108.0C12—C13—C14120.46 (9)
N1—C5—C4110.24 (9)C12—C13—H13119.8
N1—C5—H5A109.6C14—C13—H13119.8
C4—C5—H5A109.6C15—C14—C13118.98 (9)
N1—C5—H5B109.6C15—C14—C17120.39 (9)
C4—C5—H5B109.6C13—C14—C17120.63 (9)
H5A—C5—H5B108.1C16—C15—C14120.57 (9)
N1—C6—C10112.59 (8)C16—C15—H15119.7
N1—C6—C7116.67 (8)C14—C15—H15119.7
C10—C6—C7107.60 (8)C15—C16—C11121.17 (9)
N1—C6—H6106.4C15—C16—H16119.4
C10—C6—H6106.4C11—C16—H16119.4
C7—C6—H6106.4N3—C17—C14179.37 (11)
C8—C7—C6111.06 (8)
C5—N1—C1—C2−60.67 (11)N2—C9—C10—C656.38 (12)
C6—N1—C1—C2171.35 (8)N1—C6—C10—C9172.41 (8)
N1—C1—C2—C356.80 (12)C7—C6—C10—C9−57.65 (11)
C1—C2—C3—C4−52.73 (12)C8—N2—C11—C16−0.48 (13)
C2—C3—C4—C553.76 (12)C9—N2—C11—C16135.34 (10)
C1—N1—C5—C460.92 (12)C8—N2—C11—C12178.25 (9)
C6—N1—C5—C4−172.56 (9)C9—N2—C11—C12−45.93 (12)
C3—C4—C5—N1−58.25 (12)N2—C11—C12—C13−179.30 (9)
C5—N1—C6—C1063.26 (11)C16—C11—C12—C13−0.52 (14)
C1—N1—C6—C10−171.10 (8)C11—C12—C13—C140.37 (15)
C5—N1—C6—C7−61.87 (12)C12—C13—C14—C15−0.13 (15)
C1—N1—C6—C763.77 (11)C12—C13—C14—C17−179.78 (9)
N1—C6—C7—C8−174.76 (8)C13—C14—C15—C160.05 (15)
C10—C6—C7—C857.63 (11)C17—C14—C15—C16179.70 (9)
C11—N2—C8—C7−169.71 (8)C14—C15—C16—C11−0.21 (15)
C9—N2—C8—C753.24 (11)N2—C11—C16—C15179.21 (9)
C6—C7—C8—N2−56.30 (11)C12—C11—C16—C150.44 (15)
C11—N2—C9—C10169.02 (8)C15—C14—C17—N338 (9)
C8—N2—C9—C10−53.35 (11)C13—C14—C17—N3−142 (9)
Cg is the centroid of the C11–C16 ring.
D—H···AD—HH···AD···AD—H···A
C6—H6···Cgi1.002.993.9363 (14)158
C16—H16···N3ii0.952.543.3442 (16)143
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C11–C16 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6⋯Cgi1.002.993.9363 (14)158
C16—H16⋯N3ii0.952.543.3442 (16)143

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3-Amino-1,4,5,6-tetrahydropyrrolo[3,4-c]pyrazoles: a new class of CDK2 inhibitors.

Authors:  Paolo Pevarello; Daniele Fancelli; Anna Vulpetti; Raffaella Amici; Manuela Villa; Valeria Pittalà; Paola Vianello; Alexander Cameron; Marina Ciomei; Ciro Mercurio; James R Bischoff; Fulvia Roletto; Mario Varasi; Maria Gabriella Brasca
Journal:  Bioorg Med Chem Lett       Date:  2005-11-14       Impact factor: 2.823

  2 in total

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