| Literature DB >> 21579711 |
Pei Chen1, Shan Qian, Zhe-Qin Shi, Yong Wu.
Abstract
The title compound, C(10)H(7)FO(4), is an inter-mediate in the synthesis of the drug Fidarestat, (2S,4S)-2-aminoformyl-6-fluoro-spiro[chroman-4,4'-imidazolidine]-2',5'-dione. The di-hydro-pyran-one ring adopts an envelope conformation with the asymmetric C atom in the flap position. In the crystal, the mol-ecules are linked into zigzag chains along [100] by O-H⋯O hydrogen bonds and C-H⋯π inter-actions involving the benzene ring.Entities:
Year: 2010 PMID: 21579711 PMCID: PMC2979877 DOI: 10.1107/S1600536809054555
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H7FO4 | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 3184 reflections |
| θ = 1.6–27.8° | |
| µ = 0.14 mm−1 | |
| Block, colourless | |
| 0.28 × 0.23 × 0.22 mm |
| Rigaku Saturn CCD area-detector diffractometer | 1212 independent reflections |
| Radiation source: rotating anode | 1049 reflections with |
| confocal | |
| Detector resolution: 7.31 pixels mm-1 | θmax = 27.9°, θmin = 2.3° |
| ω and φ scans | |
| Absorption correction: multi-scan ( | |
| 8640 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1212 reflections | (Δ/σ)max = 0.001 |
| 137 parameters | Δρmax = 0.17 e Å−3 |
| 0 restraints | Δρmin = −0.15 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| F1 | 0.8260 (2) | 0.32440 (8) | 0.43315 (9) | 0.0336 (3) | |
| O1 | 0.2480 (2) | 0.03466 (8) | 0.23160 (9) | 0.0189 (3) | |
| O2 | 0.1188 (2) | 0.34646 (9) | 0.17373 (10) | 0.0230 (3) | |
| O3 | 0.5538 (2) | 0.03536 (10) | 0.06321 (10) | 0.0230 (3) | |
| O4 | 0.2609 (3) | 0.11076 (10) | −0.03716 (9) | 0.0250 (3) | |
| H4 | 0.3799 | 0.1179 | −0.0795 | 0.037* | |
| C1 | 0.6806 (3) | 0.25426 (12) | 0.38164 (13) | 0.0200 (4) | |
| C2 | 0.5057 (3) | 0.29048 (13) | 0.31336 (12) | 0.0184 (4) | |
| H2 | 0.4862 | 0.3636 | 0.3015 | 0.022* | |
| C3 | 0.3547 (3) | 0.21751 (12) | 0.26079 (12) | 0.0152 (3) | |
| C4 | 0.1561 (3) | 0.25266 (12) | 0.19024 (12) | 0.0154 (3) | |
| C5 | −0.0026 (3) | 0.16808 (13) | 0.14292 (12) | 0.0175 (3) | |
| H5A | −0.0588 | 0.1905 | 0.0726 | 0.021* | |
| H5B | −0.1529 | 0.1573 | 0.1868 | 0.021* | |
| C6 | 0.1404 (3) | 0.06506 (12) | 0.13377 (12) | 0.0167 (3) | |
| H6 | 0.0182 | 0.0095 | 0.1130 | 0.020* | |
| C7 | 0.3894 (3) | 0.10981 (12) | 0.27966 (12) | 0.0155 (4) | |
| C8 | 0.5700 (3) | 0.07625 (13) | 0.35030 (12) | 0.0182 (4) | |
| H8 | 0.5923 | 0.0034 | 0.3630 | 0.022* | |
| C9 | 0.7161 (4) | 0.14813 (12) | 0.40169 (12) | 0.0200 (4) | |
| H9 | 0.8396 | 0.1257 | 0.4502 | 0.024* | |
| C10 | 0.3450 (3) | 0.06823 (12) | 0.05065 (13) | 0.0174 (3) |
| F1 | 0.0418 (7) | 0.0231 (5) | 0.0358 (6) | −0.0017 (5) | −0.0248 (5) | −0.0041 (5) |
| O1 | 0.0218 (6) | 0.0139 (5) | 0.0211 (5) | −0.0031 (5) | −0.0003 (5) | 0.0013 (4) |
| O2 | 0.0246 (7) | 0.0158 (6) | 0.0287 (6) | 0.0020 (5) | −0.0091 (5) | 0.0024 (5) |
| O3 | 0.0155 (6) | 0.0265 (6) | 0.0270 (6) | 0.0037 (5) | 0.0012 (5) | −0.0053 (5) |
| O4 | 0.0189 (6) | 0.0340 (6) | 0.0221 (6) | −0.0007 (6) | 0.0050 (6) | 0.0024 (5) |
| C1 | 0.0225 (10) | 0.0191 (8) | 0.0184 (7) | −0.0018 (7) | −0.0048 (7) | −0.0029 (7) |
| C2 | 0.0226 (10) | 0.0146 (7) | 0.0181 (7) | 0.0007 (7) | −0.0026 (7) | −0.0004 (6) |
| C3 | 0.0155 (8) | 0.0147 (7) | 0.0155 (7) | 0.0006 (6) | 0.0004 (6) | 0.0009 (6) |
| C4 | 0.0137 (8) | 0.0165 (8) | 0.0161 (7) | 0.0007 (7) | 0.0018 (6) | −0.0007 (6) |
| C5 | 0.0142 (8) | 0.0182 (8) | 0.0201 (8) | −0.0016 (7) | 0.0011 (6) | −0.0024 (6) |
| C6 | 0.0151 (8) | 0.0149 (7) | 0.0201 (8) | −0.0027 (7) | 0.0004 (6) | −0.0013 (6) |
| C7 | 0.0170 (9) | 0.0140 (7) | 0.0154 (7) | −0.0006 (7) | 0.0045 (7) | −0.0012 (6) |
| C8 | 0.0226 (9) | 0.0137 (7) | 0.0181 (7) | 0.0049 (7) | 0.0033 (7) | 0.0035 (6) |
| C9 | 0.0217 (9) | 0.0229 (8) | 0.0154 (7) | 0.0042 (7) | −0.0006 (7) | 0.0024 (6) |
| C10 | 0.0174 (9) | 0.0133 (7) | 0.0214 (8) | −0.0041 (7) | 0.0010 (7) | −0.0048 (7) |
| F1—C1 | 1.3557 (18) | C3—C4 | 1.464 (2) |
| O1—C7 | 1.366 (2) | C4—C5 | 1.499 (2) |
| O1—C6 | 1.4302 (19) | C5—C6 | 1.524 (2) |
| O2—C4 | 1.2305 (19) | C5—H5A | 0.99 |
| O3—C10 | 1.203 (2) | C5—H5B | 0.99 |
| O4—C10 | 1.325 (2) | C6—C10 | 1.526 (2) |
| O4—H4 | 0.84 | C6—H6 | 1.00 |
| C1—C2 | 1.360 (2) | C7—C8 | 1.390 (2) |
| C1—C9 | 1.390 (2) | C8—C9 | 1.372 (2) |
| C2—C3 | 1.403 (2) | C8—H8 | 0.95 |
| C2—H2 | 0.95 | C9—H9 | 0.95 |
| C3—C7 | 1.406 (2) | ||
| C7—O1—C6 | 115.20 (12) | H5A—C5—H5B | 108.0 |
| C10—O4—H4 | 109.5 | O1—C6—C5 | 111.60 (12) |
| F1—C1—C2 | 118.84 (14) | O1—C6—C10 | 109.14 (14) |
| F1—C1—C9 | 118.29 (15) | C5—C6—C10 | 112.98 (13) |
| C2—C1—C9 | 122.87 (16) | O1—C6—H6 | 107.6 |
| C1—C2—C3 | 118.56 (15) | C5—C6—H6 | 107.6 |
| C1—C2—H2 | 120.7 | C10—C6—H6 | 107.6 |
| C3—C2—H2 | 120.7 | O1—C7—C8 | 117.44 (14) |
| C2—C3—C7 | 119.28 (15) | O1—C7—C3 | 122.30 (15) |
| C2—C3—C4 | 120.64 (14) | C8—C7—C3 | 120.25 (15) |
| C7—C3—C4 | 120.03 (14) | C9—C8—C7 | 120.09 (15) |
| O2—C4—C3 | 121.39 (14) | C9—C8—H8 | 120.0 |
| O2—C4—C5 | 122.54 (15) | C7—C8—H8 | 120.0 |
| C3—C4—C5 | 116.04 (13) | C8—C9—C1 | 118.95 (16) |
| C4—C5—C6 | 111.51 (13) | C8—C9—H9 | 120.5 |
| C4—C5—H5A | 109.3 | C1—C9—H9 | 120.5 |
| C6—C5—H5A | 109.3 | O3—C10—O4 | 124.77 (16) |
| C4—C5—H5B | 109.3 | O3—C10—C6 | 124.27 (15) |
| C6—C5—H5B | 109.3 | O4—C10—C6 | 110.96 (14) |
| F1—C1—C2—C3 | −179.60 (15) | C6—O1—C7—C3 | 24.6 (2) |
| C9—C1—C2—C3 | −0.1 (3) | C2—C3—C7—O1 | 179.64 (14) |
| C1—C2—C3—C7 | −0.4 (2) | C4—C3—C7—O1 | 2.1 (2) |
| C1—C2—C3—C4 | 177.15 (14) | C2—C3—C7—C8 | 0.5 (2) |
| C2—C3—C4—O2 | 1.2 (2) | C4—C3—C7—C8 | −177.00 (14) |
| C7—C3—C4—O2 | 178.73 (16) | O1—C7—C8—C9 | −179.41 (14) |
| C2—C3—C4—C5 | −176.75 (14) | C3—C7—C8—C9 | −0.3 (2) |
| C7—C3—C4—C5 | 0.8 (2) | C7—C8—C9—C1 | −0.2 (2) |
| O2—C4—C5—C6 | 154.54 (16) | F1—C1—C9—C8 | 179.88 (15) |
| C3—C4—C5—C6 | −27.50 (19) | C2—C1—C9—C8 | 0.3 (3) |
| C7—O1—C6—C5 | −52.00 (18) | O1—C6—C10—O3 | 10.0 (2) |
| C7—O1—C6—C10 | 73.59 (16) | C5—C6—C10—O3 | 134.74 (16) |
| C4—C5—C6—O1 | 53.01 (17) | O1—C6—C10—O4 | −170.78 (12) |
| C4—C5—C6—C10 | −70.43 (17) | C5—C6—C10—O4 | −46.00 (17) |
| C6—O1—C7—C8 | −156.25 (14) |
| H··· | ||||
| O4—H4···O2i | 0.84 | 1.81 | 2.6474 (19) | 171 |
| C5—H5B···Cg1ii | 0.99 | 2.51 | 3.4521 (19) | 160 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O4—H4⋯O2i | 0.84 | 1.81 | 2.6474 (19) | 171 |
| C5—H5 | 0.99 | 2.51 | 3.4521 (19) | 160 |
Symmetry codes: (i) ; (ii) . Cg1 is the centroid of the C1–C3/C7–C9 ring.