Literature DB >> 21579711

6-Fluoro-4-oxochroman-2-carboxylic acid.

Pei Chen1, Shan Qian, Zhe-Qin Shi, Yong Wu.   

Abstract

The title compound, C(10)H(7)FO(4), is an inter-mediate in the synthesis of the drug Fidarestat, (2S,4S)-2-aminoformyl-6-fluoro-spiro[chroman-4,4'-imidazolidine]-2',5'-dione. The di-hydro-pyran-one ring adopts an envelope conformation with the asymmetric C atom in the flap position. In the crystal, the mol-ecules are linked into zigzag chains along [100] by O-H⋯O hydrogen bonds and C-H⋯π inter-actions involving the benzene ring.

Entities:  

Year:  2010        PMID: 21579711      PMCID: PMC2979877          DOI: 10.1107/S1600536809054555

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Fidarestat, which shows strong inhibition to aldose reducta­ses, is used to treat complications of diabetes, see: Mealy (1996 ▶); Mitsuru et al. (2000 ▶). For related structures, see: Kurono et al. (1989 ▶); Yamaguchi et al. (1994 ▶).

Experimental

Crystal data

C10H7FO4 M = 210.16 Orthorhombic, a = 5.3472 (11) Å b = 12.748 (3) Å c = 12.785 (3) Å V = 871.5 (3) Å3 Z = 4 Mo Kα radiation μ = 0.14 mm−1 T = 113 K 0.28 × 0.23 × 0.22 mm

Data collection

Rigaku Saturn CCD area-detector diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.962, T max = 0.970 8640 measured reflections 1212 independent reflections 1049 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.073 S = 1.12 1212 reflections 137 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809054555/ci2987sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809054555/ci2987Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H7FO4F(000) = 432
Mr = 210.16Dx = 1.602 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3184 reflections
a = 5.3472 (11) Åθ = 1.6–27.8°
b = 12.748 (3) ŵ = 0.14 mm1
c = 12.785 (3) ÅT = 113 K
V = 871.5 (3) Å3Block, colourless
Z = 40.28 × 0.23 × 0.22 mm
Rigaku Saturn CCD area-detector diffractometer1212 independent reflections
Radiation source: rotating anode1049 reflections with I > 2σ(I)
confocalRint = 0.045
Detector resolution: 7.31 pixels mm-1θmax = 27.9°, θmin = 2.3°
ω and φ scansh = −7→6
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −16→16
Tmin = 0.962, Tmax = 0.970l = −16→16
8640 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.073H-atom parameters constrained
S = 1.12w = 1/[σ2(Fo2) + (0.0448P)2] where P = (Fo2 + 2Fc2)/3
1212 reflections(Δ/σ)max = 0.001
137 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.8260 (2)0.32440 (8)0.43315 (9)0.0336 (3)
O10.2480 (2)0.03466 (8)0.23160 (9)0.0189 (3)
O20.1188 (2)0.34646 (9)0.17373 (10)0.0230 (3)
O30.5538 (2)0.03536 (10)0.06321 (10)0.0230 (3)
O40.2609 (3)0.11076 (10)−0.03716 (9)0.0250 (3)
H40.37990.1179−0.07950.037*
C10.6806 (3)0.25426 (12)0.38164 (13)0.0200 (4)
C20.5057 (3)0.29048 (13)0.31336 (12)0.0184 (4)
H20.48620.36360.30150.022*
C30.3547 (3)0.21751 (12)0.26079 (12)0.0152 (3)
C40.1561 (3)0.25266 (12)0.19024 (12)0.0154 (3)
C5−0.0026 (3)0.16808 (13)0.14292 (12)0.0175 (3)
H5A−0.05880.19050.07260.021*
H5B−0.15290.15730.18680.021*
C60.1404 (3)0.06506 (12)0.13377 (12)0.0167 (3)
H60.01820.00950.11300.020*
C70.3894 (3)0.10981 (12)0.27966 (12)0.0155 (4)
C80.5700 (3)0.07625 (13)0.35030 (12)0.0182 (4)
H80.59230.00340.36300.022*
C90.7161 (4)0.14813 (12)0.40169 (12)0.0200 (4)
H90.83960.12570.45020.024*
C100.3450 (3)0.06823 (12)0.05065 (13)0.0174 (3)
U11U22U33U12U13U23
F10.0418 (7)0.0231 (5)0.0358 (6)−0.0017 (5)−0.0248 (5)−0.0041 (5)
O10.0218 (6)0.0139 (5)0.0211 (5)−0.0031 (5)−0.0003 (5)0.0013 (4)
O20.0246 (7)0.0158 (6)0.0287 (6)0.0020 (5)−0.0091 (5)0.0024 (5)
O30.0155 (6)0.0265 (6)0.0270 (6)0.0037 (5)0.0012 (5)−0.0053 (5)
O40.0189 (6)0.0340 (6)0.0221 (6)−0.0007 (6)0.0050 (6)0.0024 (5)
C10.0225 (10)0.0191 (8)0.0184 (7)−0.0018 (7)−0.0048 (7)−0.0029 (7)
C20.0226 (10)0.0146 (7)0.0181 (7)0.0007 (7)−0.0026 (7)−0.0004 (6)
C30.0155 (8)0.0147 (7)0.0155 (7)0.0006 (6)0.0004 (6)0.0009 (6)
C40.0137 (8)0.0165 (8)0.0161 (7)0.0007 (7)0.0018 (6)−0.0007 (6)
C50.0142 (8)0.0182 (8)0.0201 (8)−0.0016 (7)0.0011 (6)−0.0024 (6)
C60.0151 (8)0.0149 (7)0.0201 (8)−0.0027 (7)0.0004 (6)−0.0013 (6)
C70.0170 (9)0.0140 (7)0.0154 (7)−0.0006 (7)0.0045 (7)−0.0012 (6)
C80.0226 (9)0.0137 (7)0.0181 (7)0.0049 (7)0.0033 (7)0.0035 (6)
C90.0217 (9)0.0229 (8)0.0154 (7)0.0042 (7)−0.0006 (7)0.0024 (6)
C100.0174 (9)0.0133 (7)0.0214 (8)−0.0041 (7)0.0010 (7)−0.0048 (7)
F1—C11.3557 (18)C3—C41.464 (2)
O1—C71.366 (2)C4—C51.499 (2)
O1—C61.4302 (19)C5—C61.524 (2)
O2—C41.2305 (19)C5—H5A0.99
O3—C101.203 (2)C5—H5B0.99
O4—C101.325 (2)C6—C101.526 (2)
O4—H40.84C6—H61.00
C1—C21.360 (2)C7—C81.390 (2)
C1—C91.390 (2)C8—C91.372 (2)
C2—C31.403 (2)C8—H80.95
C2—H20.95C9—H90.95
C3—C71.406 (2)
C7—O1—C6115.20 (12)H5A—C5—H5B108.0
C10—O4—H4109.5O1—C6—C5111.60 (12)
F1—C1—C2118.84 (14)O1—C6—C10109.14 (14)
F1—C1—C9118.29 (15)C5—C6—C10112.98 (13)
C2—C1—C9122.87 (16)O1—C6—H6107.6
C1—C2—C3118.56 (15)C5—C6—H6107.6
C1—C2—H2120.7C10—C6—H6107.6
C3—C2—H2120.7O1—C7—C8117.44 (14)
C2—C3—C7119.28 (15)O1—C7—C3122.30 (15)
C2—C3—C4120.64 (14)C8—C7—C3120.25 (15)
C7—C3—C4120.03 (14)C9—C8—C7120.09 (15)
O2—C4—C3121.39 (14)C9—C8—H8120.0
O2—C4—C5122.54 (15)C7—C8—H8120.0
C3—C4—C5116.04 (13)C8—C9—C1118.95 (16)
C4—C5—C6111.51 (13)C8—C9—H9120.5
C4—C5—H5A109.3C1—C9—H9120.5
C6—C5—H5A109.3O3—C10—O4124.77 (16)
C4—C5—H5B109.3O3—C10—C6124.27 (15)
C6—C5—H5B109.3O4—C10—C6110.96 (14)
F1—C1—C2—C3−179.60 (15)C6—O1—C7—C324.6 (2)
C9—C1—C2—C3−0.1 (3)C2—C3—C7—O1179.64 (14)
C1—C2—C3—C7−0.4 (2)C4—C3—C7—O12.1 (2)
C1—C2—C3—C4177.15 (14)C2—C3—C7—C80.5 (2)
C2—C3—C4—O21.2 (2)C4—C3—C7—C8−177.00 (14)
C7—C3—C4—O2178.73 (16)O1—C7—C8—C9−179.41 (14)
C2—C3—C4—C5−176.75 (14)C3—C7—C8—C9−0.3 (2)
C7—C3—C4—C50.8 (2)C7—C8—C9—C1−0.2 (2)
O2—C4—C5—C6154.54 (16)F1—C1—C9—C8179.88 (15)
C3—C4—C5—C6−27.50 (19)C2—C1—C9—C80.3 (3)
C7—O1—C6—C5−52.00 (18)O1—C6—C10—O310.0 (2)
C7—O1—C6—C1073.59 (16)C5—C6—C10—O3134.74 (16)
C4—C5—C6—O153.01 (17)O1—C6—C10—O4−170.78 (12)
C4—C5—C6—C10−70.43 (17)C5—C6—C10—O4−46.00 (17)
C6—O1—C7—C8−156.25 (14)
D—H···AD—HH···AD···AD—H···A
O4—H4···O2i0.841.812.6474 (19)171
C5—H5B···Cg1ii0.992.513.4521 (19)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4⋯O2i0.841.812.6474 (19)171
C5—H5BCg1ii0.992.513.4521 (19)160

Symmetry codes: (i) ; (ii) . Cg1 is the centroid of the C1–C3/C7–C9 ring.

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  A potent aldose reductase inhibitor, (2S,4S)-6-fluoro-2', 5'-dioxospiro[chroman-4,4'-imidazolidine]-2-carboxamide (Fidarestat): its absolute configuration and interactions with the aldose reductase by X-ray crystallography.

Authors:  M Oka; Y Matsumoto; S Sugiyama; N Tsuruta; M Matsushima
Journal:  J Med Chem       Date:  2000-06-15       Impact factor: 7.446

3.  Synthesis and aldose reductase inhibitory activity of 2-substituted-6-fluoro-2,3-dihydrospiro [4H-1-benzopyran-4, 4'-imidazolidine]-2',5'-diones.

Authors:  T Yamaguchi; K Miura; T Usui; R Unno; Y Matsumoto; M Fukushima; K Mizuno; Y Kondo; Y Baba; M Kurono
Journal:  Arzneimittelforschung       Date:  1994-03
  3 in total

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