Literature DB >> 21579607

Bis{2-eth-oxy-6-[2-(methyl-ammonio)ethyl-imino-meth-yl]phenolato}thio-cyanato-zinc(II) nitrate.

Chen-Yi Wang1, Zhi-Ping Han, Xiang Wu, Cai-Jun Yuan, Jun-Bo Zhou.   

Abstract

In the title compound, [Zn(NCS)(C(12)H(18)N(2)O(2))(2)]NO(3), the Zn(II) ion is chelated by the phenolate O and imine N atoms from two zwitterionic Schiff base ligands and is also coordinated by the N atom of a thio-cyanate ligand, giving a distorted trigonal-bipyramidal geometry. Intra-molecular N-H⋯O hydrogen bonds are observed in the complex cation. The nitrate anions are linked to the complex cations through N-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21579607      PMCID: PMC2979686          DOI: 10.1107/S1600536810000036

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Zhang & Wang (2007 ▶); Adams et al. (2003 ▶).

Experimental

Crystal data

[Zn(NCS)(C12H18N2O2)2]NO3 M = 630.03 Monoclinic, a = 10.601 (2) Å b = 23.335 (3) Å c = 13.749 (2) Å β = 112.218 (3)° V = 3148.6 (9) Å3 Z = 4 Mo Kα radiation μ = 0.90 mm−1 T = 298 K 0.20 × 0.20 × 0.18 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.841, T max = 0.856 18443 measured reflections 6818 independent reflections 3644 reflections with I > 2σ(I) R int = 0.139

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.157 S = 0.91 6818 reflections 365 parameters 6 restraints H-atom parameters constrained Δρmax = 0.69 e Å−3 Δρmin = −0.63 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810000036/ci5009sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810000036/ci5009Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(NCS)(C12H18N2O2)2]NO3F(000) = 1320
Mr = 630.03Dx = 1.329 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3892 reflections
a = 10.601 (2) Åθ = 2.3–25.5°
b = 23.335 (3) ŵ = 0.90 mm1
c = 13.749 (2) ÅT = 298 K
β = 112.218 (3)°Block, colourless
V = 3148.6 (9) Å30.20 × 0.20 × 0.18 mm
Z = 4
Bruker SMART CCD area-detector diffractometer6818 independent reflections
Radiation source: fine-focus sealed tube3644 reflections with I > 2σ(I)
graphiteRint = 0.139
ω scanθmax = 27.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −13→13
Tmin = 0.841, Tmax = 0.856k = −29→28
18443 measured reflectionsl = −17→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.157H-atom parameters constrained
S = 0.91w = 1/[σ2(Fo2) + (0.0647P)2] where P = (Fo2 + 2Fc2)/3
6818 reflections(Δ/σ)max = 0.001
365 parametersΔρmax = 0.69 e Å3
6 restraintsΔρmin = −0.63 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.89814 (4)0.910567 (18)0.15980 (3)0.04957 (18)
N10.9386 (4)0.99186 (14)0.1129 (3)0.0615 (9)
N20.7214 (3)1.05264 (13)0.1565 (2)0.0540 (8)
H2A0.76861.08550.16360.065*
H2B0.77051.02880.20850.065*
N30.8674 (3)0.82940 (12)0.2138 (3)0.0520 (8)
N41.1307 (3)0.78461 (14)0.2169 (3)0.0644 (9)
H4A1.13400.76100.26950.077*
H4B1.13520.82080.24040.077*
N50.1534 (6)0.6837 (2)0.3942 (4)0.1041 (16)
N60.7831 (4)0.88758 (17)0.0075 (3)0.0770 (11)
O11.0989 (3)0.89846 (11)0.2324 (2)0.0599 (7)
O21.3351 (3)0.86419 (17)0.3710 (3)0.0830 (10)
O30.8145 (3)0.94858 (10)0.24990 (18)0.0515 (6)
O40.8062 (3)1.02305 (12)0.3908 (2)0.0574 (7)
O50.1139 (4)0.73228 (16)0.4024 (3)0.1062 (12)
O60.2187 (7)0.6552 (2)0.4726 (4)0.175 (2)
O70.1510 (4)0.66460 (16)0.3124 (3)0.1077 (13)
S10.65759 (17)0.81681 (6)−0.16349 (11)0.1041 (5)
C11.1809 (5)0.9943 (2)0.2309 (4)0.0709 (13)
C21.1969 (4)0.9368 (2)0.2642 (3)0.0609 (11)
C31.3288 (5)0.9196 (3)0.3372 (4)0.0748 (14)
C41.4340 (6)0.9584 (3)0.3697 (5)0.106 (2)
H41.51960.94680.41600.128*
C51.4143 (8)1.0148 (4)0.3344 (5)0.124 (3)
H51.48681.04050.35760.149*
C61.2928 (7)1.0325 (3)0.2677 (4)0.0959 (19)
H61.28141.07040.24510.115*
C71.0547 (6)1.01704 (19)0.1556 (4)0.0741 (14)
H71.05791.05490.13530.089*
C80.8286 (5)1.0229 (2)0.0317 (4)0.0824 (15)
H8A0.80861.0040−0.03530.099*
H8B0.85931.06150.02610.099*
C90.7009 (5)1.02618 (19)0.0535 (3)0.0665 (12)
H9A0.63361.0483−0.00170.080*
H9B0.66480.98780.05160.080*
C100.5889 (4)1.0648 (2)0.1656 (4)0.0857 (15)
H10A0.53901.09220.11300.128*
H10B0.60471.08010.23410.128*
H10C0.53721.03000.15570.128*
C111.4620 (5)0.8444 (3)0.4510 (5)0.116 (2)
H11A1.48980.87050.51020.139*
H11B1.53290.84390.42250.139*
C121.4452 (7)0.7866 (3)0.4864 (6)0.146 (3)
H12A1.36610.78580.50450.219*
H12B1.52430.77670.54680.219*
H12C1.43400.75970.43100.219*
C130.8233 (3)0.86814 (17)0.3627 (3)0.0508 (9)
C140.8163 (3)0.92729 (16)0.3392 (3)0.0464 (9)
C150.8116 (3)0.96620 (18)0.4179 (3)0.0505 (10)
C160.8127 (4)0.9463 (2)0.5121 (3)0.0671 (12)
H160.81140.97210.56320.081*
C170.8156 (5)0.8877 (2)0.5319 (4)0.0801 (14)
H170.81500.87470.59570.096*
C180.8192 (4)0.8498 (2)0.4591 (4)0.0695 (12)
H180.81900.81080.47280.083*
C190.8394 (4)0.82363 (17)0.2956 (3)0.0559 (10)
H190.82810.78620.31430.067*
C200.8790 (4)0.77626 (17)0.1597 (4)0.0689 (12)
H20A0.79650.77120.09770.083*
H20B0.88660.74390.20590.083*
C210.9995 (4)0.77629 (18)0.1273 (3)0.0670 (12)
H21A1.00220.74020.09330.080*
H21B0.98810.80660.07640.080*
C221.2507 (5)0.7733 (2)0.1879 (4)0.0896 (15)
H22A1.24680.73460.16320.134*
H22B1.33310.77870.24840.134*
H22C1.24940.79930.13340.134*
C230.8179 (4)1.0643 (2)0.4712 (3)0.0668 (12)
H23A0.90291.05860.53060.080*
H23B0.74351.05940.49520.080*
C240.8139 (5)1.1231 (2)0.4286 (4)0.0909 (16)
H24A0.87931.12610.39600.136*
H24B0.83541.15040.48470.136*
H24C0.72441.13080.37750.136*
C250.7319 (5)0.85823 (19)−0.0634 (4)0.0663 (12)
U11U22U33U12U13U23
Zn10.0578 (3)0.0483 (3)0.0503 (3)−0.0002 (2)0.0291 (2)−0.0045 (2)
N10.088 (3)0.054 (2)0.067 (2)0.003 (2)0.057 (2)0.0022 (18)
N20.061 (2)0.0538 (19)0.0544 (19)0.0034 (16)0.0300 (17)−0.0049 (16)
N30.0515 (19)0.0462 (18)0.060 (2)−0.0018 (15)0.0231 (17)−0.0066 (16)
N40.074 (2)0.057 (2)0.065 (2)0.0096 (18)0.029 (2)−0.0055 (18)
N50.161 (5)0.073 (3)0.075 (3)0.019 (3)0.040 (3)0.017 (3)
N60.094 (3)0.071 (2)0.058 (2)0.009 (2)0.020 (2)−0.007 (2)
O10.0493 (16)0.0565 (16)0.0770 (19)−0.0063 (12)0.0276 (15)−0.0131 (14)
O20.0466 (18)0.117 (3)0.082 (2)0.0016 (18)0.0202 (17)−0.016 (2)
O30.0676 (17)0.0498 (15)0.0483 (14)0.0008 (13)0.0346 (13)0.0014 (12)
O40.0657 (18)0.0639 (18)0.0540 (16)−0.0044 (14)0.0355 (14)−0.0120 (14)
O50.152 (3)0.074 (2)0.105 (3)0.027 (2)0.063 (3)0.007 (2)
O60.280 (5)0.103 (3)0.127 (3)0.022 (3)0.057 (3)0.006 (3)
O70.158 (4)0.098 (3)0.081 (2)0.029 (2)0.061 (3)0.000 (2)
S10.1313 (13)0.0791 (9)0.0851 (9)0.0145 (8)0.0218 (9)−0.0306 (8)
C10.093 (4)0.082 (3)0.064 (3)−0.037 (3)0.059 (3)−0.028 (3)
C20.064 (3)0.074 (3)0.063 (3)−0.021 (2)0.046 (2)−0.025 (2)
C30.057 (3)0.114 (4)0.068 (3)−0.027 (3)0.040 (3)−0.031 (3)
C40.076 (4)0.180 (7)0.077 (4)−0.052 (4)0.046 (3)−0.033 (4)
C50.124 (6)0.189 (8)0.086 (4)−0.103 (6)0.069 (4)−0.050 (5)
C60.131 (5)0.108 (4)0.081 (4)−0.071 (4)0.075 (4)−0.031 (3)
C70.123 (4)0.052 (3)0.086 (3)−0.013 (3)0.084 (4)−0.010 (3)
C80.125 (4)0.071 (3)0.077 (3)0.025 (3)0.067 (3)0.017 (3)
C90.084 (3)0.067 (3)0.052 (2)0.016 (2)0.030 (2)−0.007 (2)
C100.068 (3)0.116 (4)0.081 (3)0.021 (3)0.037 (3)−0.012 (3)
C110.057 (3)0.181 (7)0.100 (4)0.009 (4)0.018 (3)−0.027 (5)
C120.107 (5)0.160 (7)0.141 (6)0.053 (5)0.012 (5)0.010 (6)
C130.038 (2)0.064 (3)0.054 (2)0.0025 (18)0.0217 (18)0.010 (2)
C140.0313 (19)0.062 (2)0.050 (2)−0.0002 (17)0.0201 (17)−0.0017 (19)
C150.036 (2)0.073 (3)0.049 (2)0.0034 (18)0.0226 (18)−0.001 (2)
C160.059 (3)0.102 (4)0.046 (2)0.011 (2)0.026 (2)0.002 (2)
C170.078 (3)0.117 (4)0.057 (3)0.028 (3)0.038 (3)0.030 (3)
C180.064 (3)0.080 (3)0.072 (3)0.021 (2)0.034 (2)0.030 (3)
C190.046 (2)0.050 (2)0.069 (3)−0.0051 (18)0.020 (2)0.009 (2)
C200.076 (3)0.047 (2)0.084 (3)−0.008 (2)0.030 (3)−0.014 (2)
C210.079 (3)0.052 (2)0.072 (3)0.003 (2)0.031 (3)−0.020 (2)
C220.084 (3)0.098 (4)0.099 (4)0.014 (3)0.049 (3)−0.020 (3)
C230.053 (3)0.089 (3)0.060 (3)−0.002 (2)0.023 (2)−0.026 (3)
C240.104 (4)0.082 (4)0.105 (4)−0.024 (3)0.060 (3)−0.040 (3)
C250.078 (3)0.061 (3)0.059 (3)0.018 (2)0.024 (2)0.001 (2)
Zn1—O31.985 (2)C8—C91.495 (6)
Zn1—O11.999 (3)C8—H8A0.97
Zn1—N62.056 (4)C8—H8B0.97
Zn1—N12.100 (3)C9—H9A0.97
Zn1—N32.104 (3)C9—H9B0.97
N1—C71.288 (6)C10—H10A0.96
N1—C81.465 (5)C10—H10B0.96
N2—C91.484 (5)C10—H10C0.96
N2—C101.485 (5)C11—C121.466 (8)
N2—H2A0.90C11—H11A0.97
N2—H2B0.90C11—H11B0.97
N3—C191.274 (5)C12—H12A0.96
N3—C201.475 (5)C12—H12B0.96
N4—C211.481 (5)C12—H12C0.96
N4—C221.494 (5)C13—C181.410 (6)
N4—H4A0.90C13—C141.413 (5)
N4—H4B0.90C13—C191.442 (5)
N5—O71.201 (5)C14—C151.428 (5)
N5—O51.229 (5)C15—C161.373 (5)
N5—O61.232 (6)C16—C171.392 (6)
N6—C251.147 (5)C16—H160.93
O1—C21.315 (4)C17—C181.347 (6)
O2—C31.368 (6)C17—H170.93
O2—C111.454 (6)C18—H180.93
O3—C141.318 (4)C19—H190.93
O4—C151.373 (5)C20—C211.504 (6)
O4—C231.435 (4)C20—H20A0.97
S1—C251.621 (5)C20—H20B0.97
C1—C21.407 (6)C21—H21A0.97
C1—C61.416 (6)C21—H21B0.97
C1—C71.448 (7)C22—H22A0.96
C2—C31.435 (6)C22—H22B0.96
C3—C41.373 (7)C22—H22C0.96
C4—C51.392 (9)C23—C241.486 (6)
C4—H40.93C23—H23A0.97
C5—C61.334 (9)C23—H23B0.97
C5—H50.93C24—H24A0.96
C6—H60.93C24—H24B0.96
C7—H70.93C24—H24C0.96
O3—Zn1—O1113.20 (11)N2—C10—H10B109.5
O3—Zn1—N6121.28 (14)H10A—C10—H10B109.5
O1—Zn1—N6125.52 (14)N2—C10—H10C109.5
O3—Zn1—N188.83 (11)H10A—C10—H10C109.5
O1—Zn1—N188.76 (13)H10B—C10—H10C109.5
N6—Zn1—N191.96 (15)O2—C11—C12110.4 (5)
O3—Zn1—N390.95 (11)O2—C11—H11A109.6
O1—Zn1—N388.52 (11)C12—C11—H11A109.6
N6—Zn1—N390.76 (14)O2—C11—H11B109.6
N1—Zn1—N3176.95 (14)C12—C11—H11B109.6
C7—N1—C8118.1 (4)H11A—C11—H11B108.1
C7—N1—Zn1122.9 (3)C11—C12—H12A109.5
C8—N1—Zn1119.0 (3)C11—C12—H12B109.5
C9—N2—C10111.0 (3)H12A—C12—H12B109.5
C9—N2—H2A109.4C11—C12—H12C109.5
C10—N2—H2A109.4H12A—C12—H12C109.5
C9—N2—H2B109.4H12B—C12—H12C109.5
C10—N2—H2B109.4C18—C13—C14119.6 (4)
H2A—N2—H2B108.0C18—C13—C19115.9 (4)
C19—N3—C20116.6 (3)C14—C13—C19124.5 (4)
C19—N3—Zn1121.7 (3)O3—C14—C13124.2 (3)
C20—N3—Zn1121.7 (3)O3—C14—C15118.3 (3)
C21—N4—C22112.4 (3)C13—C14—C15117.5 (4)
C21—N4—H4A109.1C16—C15—O4124.6 (4)
C22—N4—H4A109.1C16—C15—C14120.6 (4)
C21—N4—H4B109.1O4—C15—C14114.8 (3)
C22—N4—H4B109.1C15—C16—C17120.6 (4)
H4A—N4—H4B107.9C15—C16—H16119.7
O7—N5—O5122.7 (5)C17—C16—H16119.7
O7—N5—O6115.1 (5)C18—C17—C16120.3 (4)
O5—N5—O6121.1 (5)C18—C17—H17119.9
C25—N6—Zn1158.4 (4)C16—C17—H17119.9
C2—O1—Zn1128.9 (3)C17—C18—C13121.3 (4)
C3—O2—C11118.1 (4)C17—C18—H18119.4
C14—O3—Zn1124.1 (2)C13—C18—H18119.4
C15—O4—C23117.2 (3)N3—C19—C13127.7 (4)
C2—C1—C6120.2 (5)N3—C19—H19116.1
C2—C1—C7123.2 (4)C13—C19—H19116.1
C6—C1—C7116.6 (5)N3—C20—C21113.0 (3)
O1—C2—C1123.9 (4)N3—C20—H20A109.0
O1—C2—C3118.8 (4)C21—C20—H20A109.0
C1—C2—C3117.3 (4)N3—C20—H20B109.0
O2—C3—C4125.6 (6)C21—C20—H20B109.0
O2—C3—C2114.3 (4)H20A—C20—H20B107.8
C4—C3—C2120.1 (6)N4—C21—C20112.9 (4)
C3—C4—C5120.9 (6)N4—C21—H21A109.0
C3—C4—H4119.6C20—C21—H21A109.0
C5—C4—H4119.6N4—C21—H21B109.0
C6—C5—C4120.8 (6)C20—C21—H21B109.0
C6—C5—H5119.6H21A—C21—H21B107.8
C4—C5—H5119.6N4—C22—H22A109.5
C5—C6—C1120.8 (6)N4—C22—H22B109.5
C5—C6—H6119.6H22A—C22—H22B109.5
C1—C6—H6119.6N4—C22—H22C109.5
N1—C7—C1128.6 (4)H22A—C22—H22C109.5
N1—C7—H7115.7H22B—C22—H22C109.5
C1—C7—H7115.7O4—C23—C24109.5 (3)
N1—C8—C9113.2 (4)O4—C23—H23A109.8
N1—C8—H8A108.9C24—C23—H23A109.8
C9—C8—H8A108.9O4—C23—H23B109.8
N1—C8—H8B108.9C24—C23—H23B109.8
C9—C8—H8B108.9H23A—C23—H23B108.2
H8A—C8—H8B107.8C23—C24—H24A109.5
N2—C9—C8113.3 (4)C23—C24—H24B109.5
N2—C9—H9A108.9H24A—C24—H24B109.5
C8—C9—H9A108.9C23—C24—H24C109.5
N2—C9—H9B108.9H24A—C24—H24C109.5
C8—C9—H9B108.9H24B—C24—H24C109.5
H9A—C9—H9B107.7N6—C25—S1179.2 (5)
N2—C10—H10A109.5
D—H···AD—HH···AD···AD—H···A
N2—H2B···O30.901.962.750 (4)145
N2—H2B···O40.902.393.078 (4)133
N4—H4B···O10.901.852.697 (4)157
N4—H4B···O20.902.423.027 (5)125
N2—H2A···O7i0.902.012.898 (5)170
N2—H2A···O6i0.902.523.183 (6)131
N4—H4A···O5ii0.902.032.894 (5)160
N4—H4A···O7ii0.902.313.066 (5)141
Table 1

Selected bond lengths (Å)

Zn1—O31.985 (2)
Zn1—O11.999 (3)
Zn1—N62.056 (4)
Zn1—N12.100 (3)
Zn1—N32.104 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2B⋯O30.901.962.750 (4)145
N2—H2B⋯O40.902.393.078 (4)133
N4—H4B⋯O10.901.852.697 (4)157
N4—H4B⋯O20.902.423.027 (5)125
N2—H2A⋯O7i0.902.012.898 (5)170
N2—H2A⋯O6i0.902.523.183 (6)131
N4—H4A⋯O5ii0.902.032.894 (5)160
N4—H4A⋯O7ii0.902.313.066 (5)141

Symmetry codes: (i) ; (ii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  1 in total

1.  Bis{N-methyl-N'-[1-(pyridin-2-yl)ethyl-idene]ethane-1,2-diamine}-zinc bis-(perchlorate).

Authors:  Chen-Yi Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-06
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.