| Literature DB >> 21579603 |
Yanmei Chen, Bin Xu, Shixiong She, Bin Hu, Yahong Li.
Abstract
The structure of the title compound, [Co(C(13)H(11)N(4)O)(2)(CH(3)OH)(2)], is a mononuclear six-coordinated octa-Entities:
Year: 2010 PMID: 21579603 PMCID: PMC2979696 DOI: 10.1107/S1600536809055305
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Co(C13H11N4O)2(CH4O)2] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2392 reflections |
| θ = 2.4–24.6° | |
| µ = 0.64 mm−1 | |
| β = 92.372 (6)° | Block, clear violet |
| 0.35 × 0.28 × 0.27 mm | |
| Bruker SMART CCD area-detector diffractometer | 2564 independent reflections |
| Radiation source: fine-focus sealed tube | 2037 reflections with |
| graphite | |
| phi and ω scans | θmax = 25.0°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 6990 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2564 reflections | (Δ/σ)max < 0.001 |
| 196 parameters | Δρmax = 0.40 e Å−3 |
| 0 restraints | Δρmin = −0.43 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Co1 | 1.0000 | 1.0000 | 1.0000 | 0.03524 (19) | |
| C1 | 0.8530 (5) | 0.7374 (3) | 1.09426 (11) | 0.0528 (7) | |
| H1 | 0.9758 | 0.7899 | 1.0914 | 0.063* | |
| C2 | 0.8241 (6) | 0.6473 (4) | 1.13836 (11) | 0.0640 (9) | |
| H2 | 0.9270 | 0.6404 | 1.1651 | 0.077* | |
| C3 | 0.6446 (6) | 0.5688 (4) | 1.14251 (13) | 0.0642 (9) | |
| H3 | 0.6256 | 0.5087 | 1.1721 | 0.077* | |
| C4 | 0.4933 (5) | 0.5785 (4) | 1.10342 (14) | 0.0720 (10) | |
| H4 | 0.3721 | 0.5241 | 1.1064 | 0.086* | |
| C5 | 0.5185 (5) | 0.6687 (4) | 1.05925 (13) | 0.0634 (9) | |
| H5 | 0.4145 | 0.6753 | 1.0328 | 0.076* | |
| C6 | 0.7007 (4) | 0.7492 (3) | 1.05484 (10) | 0.0382 (6) | |
| C7 | 0.6545 (4) | 0.9405 (3) | 0.93219 (10) | 0.0367 (6) | |
| C8 | 0.4192 (4) | 1.0503 (3) | 0.80937 (10) | 0.0437 (6) | |
| C9 | 0.2276 (5) | 0.9825 (3) | 0.80672 (13) | 0.0584 (8) | |
| H9 | 0.1907 | 0.9157 | 0.8330 | 0.070* | |
| C10 | 0.0906 (6) | 1.0150 (4) | 0.76451 (14) | 0.0710 (10) | |
| H10 | −0.0385 | 0.9697 | 0.7627 | 0.085* | |
| C11 | 0.1441 (6) | 1.1139 (4) | 0.72520 (13) | 0.0719 (10) | |
| H11 | 0.0509 | 1.1361 | 0.6972 | 0.086* | |
| C12 | 0.3356 (6) | 1.1794 (4) | 0.72765 (11) | 0.0648 (9) | |
| H12 | 0.3720 | 1.2450 | 0.7009 | 0.078* | |
| C13 | 0.4753 (5) | 1.1491 (3) | 0.76934 (10) | 0.0538 (7) | |
| H13 | 0.6047 | 1.1940 | 0.7707 | 0.065* | |
| C14 | 0.9161 (6) | 1.3027 (4) | 1.06416 (16) | 0.0849 (12) | |
| H14A | 1.0319 | 1.2726 | 1.0866 | 0.127* | |
| H14B | 0.8090 | 1.3405 | 1.0857 | 0.127* | |
| H14C | 0.9580 | 1.3797 | 1.0403 | 0.127* | |
| N1 | 0.7412 (3) | 0.8471 (2) | 1.01157 (8) | 0.0359 (5) | |
| N2 | 0.6030 (3) | 0.8460 (2) | 0.97330 (8) | 0.0391 (5) | |
| N3 | 0.5120 (3) | 0.9360 (3) | 0.89297 (8) | 0.0411 (5) | |
| N4 | 0.5597 (4) | 1.0247 (3) | 0.85196 (9) | 0.0463 (6) | |
| O1 | 0.8187 (3) | 1.0213 (2) | 0.93292 (7) | 0.0438 (5) | |
| O2 | 0.8423 (3) | 1.1797 (2) | 1.03493 (9) | 0.0570 (6) | |
| H4' | 0.660 (5) | 1.073 (3) | 0.8563 (11) | 0.048 (9)* | |
| H2' | 0.720 (6) | 1.167 (4) | 1.0382 (13) | 0.084 (12)* |
| Co1 | 0.0269 (3) | 0.0445 (3) | 0.0341 (3) | −0.0019 (2) | −0.00083 (18) | −0.0004 (2) |
| C1 | 0.0589 (19) | 0.0546 (17) | 0.0445 (16) | −0.0123 (14) | −0.0024 (14) | 0.0054 (13) |
| C2 | 0.088 (3) | 0.0600 (19) | 0.0428 (16) | −0.0077 (18) | −0.0077 (16) | 0.0091 (14) |
| C3 | 0.086 (3) | 0.0534 (18) | 0.0543 (19) | −0.0007 (18) | 0.0204 (18) | 0.0125 (15) |
| C4 | 0.057 (2) | 0.074 (2) | 0.086 (3) | −0.0096 (18) | 0.0160 (19) | 0.029 (2) |
| C5 | 0.0419 (17) | 0.076 (2) | 0.073 (2) | −0.0062 (16) | 0.0013 (15) | 0.0258 (17) |
| C6 | 0.0402 (14) | 0.0368 (13) | 0.0382 (14) | 0.0022 (11) | 0.0080 (11) | −0.0002 (11) |
| C7 | 0.0284 (13) | 0.0454 (13) | 0.0362 (13) | 0.0017 (11) | 0.0003 (10) | −0.0023 (11) |
| C8 | 0.0474 (17) | 0.0479 (15) | 0.0352 (14) | 0.0059 (12) | −0.0044 (12) | −0.0064 (11) |
| C9 | 0.064 (2) | 0.0593 (19) | 0.0508 (18) | −0.0049 (15) | −0.0145 (15) | 0.0038 (14) |
| C10 | 0.066 (2) | 0.078 (2) | 0.066 (2) | −0.0084 (18) | −0.0298 (17) | 0.0024 (18) |
| C11 | 0.087 (3) | 0.071 (2) | 0.0549 (19) | 0.013 (2) | −0.0312 (18) | −0.0007 (18) |
| C12 | 0.093 (3) | 0.0605 (19) | 0.0408 (17) | 0.0102 (18) | −0.0044 (16) | 0.0036 (14) |
| C13 | 0.0610 (19) | 0.0583 (18) | 0.0420 (15) | 0.0018 (15) | 0.0001 (13) | −0.0031 (13) |
| C14 | 0.058 (2) | 0.084 (3) | 0.113 (3) | −0.0036 (19) | 0.015 (2) | −0.047 (2) |
| N1 | 0.0296 (11) | 0.0426 (12) | 0.0355 (11) | 0.0026 (9) | 0.0028 (9) | −0.0024 (9) |
| N2 | 0.0313 (11) | 0.0472 (13) | 0.0386 (12) | 0.0003 (9) | 0.0013 (9) | −0.0009 (10) |
| N3 | 0.0342 (12) | 0.0524 (13) | 0.0365 (12) | −0.0015 (10) | −0.0017 (9) | −0.0010 (10) |
| N4 | 0.0397 (14) | 0.0592 (16) | 0.0394 (13) | −0.0065 (12) | −0.0059 (10) | 0.0034 (11) |
| O1 | 0.0355 (10) | 0.0560 (12) | 0.0395 (10) | −0.0074 (9) | −0.0035 (8) | 0.0049 (8) |
| O2 | 0.0295 (11) | 0.0635 (13) | 0.0786 (15) | −0.0035 (10) | 0.0100 (10) | −0.0232 (11) |
| Co1—O1i | 2.0263 (18) | C8—C9 | 1.383 (4) |
| Co1—O1 | 2.0263 (18) | C8—N4 | 1.397 (3) |
| Co1—O2 | 2.114 (2) | C8—C13 | 1.398 (4) |
| Co1—O2i | 2.114 (2) | C9—C10 | 1.387 (4) |
| Co1—N1i | 2.193 (2) | C9—H9 | 0.9300 |
| Co1—N1 | 2.193 (2) | C10—C11 | 1.381 (5) |
| C1—C6 | 1.375 (4) | C10—H10 | 0.9300 |
| C1—C2 | 1.389 (4) | C11—C12 | 1.373 (5) |
| C1—H1 | 0.9300 | C11—H11 | 0.9300 |
| C2—C3 | 1.368 (5) | C12—C13 | 1.384 (4) |
| C2—H2 | 0.9300 | C12—H12 | 0.9300 |
| C3—C4 | 1.363 (5) | C13—H13 | 0.9300 |
| C3—H3 | 0.9300 | C14—O2 | 1.395 (4) |
| C4—C5 | 1.387 (4) | C14—H14A | 0.9600 |
| C4—H4 | 0.9300 | C14—H14B | 0.9600 |
| C5—C6 | 1.392 (4) | C14—H14C | 0.9600 |
| C5—H5 | 0.9300 | N1—N2 | 1.289 (3) |
| C6—N1 | 1.429 (3) | N3—N4 | 1.347 (3) |
| C7—O1 | 1.286 (3) | N4—H4' | 0.78 (3) |
| C7—N3 | 1.325 (3) | O2—H2' | 0.81 (4) |
| C7—N2 | 1.386 (3) | ||
| O1i—Co1—O1 | 179.999 (1) | C9—C8—N4 | 121.6 (3) |
| O1i—Co1—O2 | 89.97 (8) | C9—C8—C13 | 120.1 (3) |
| O1—Co1—O2 | 90.03 (8) | N4—C8—C13 | 118.3 (3) |
| O1i—Co1—O2i | 90.03 (8) | C8—C9—C10 | 119.5 (3) |
| O1—Co1—O2i | 89.97 (8) | C8—C9—H9 | 120.2 |
| O2—Co1—O2i | 179.997 (1) | C10—C9—H9 | 120.2 |
| O1i—Co1—N1i | 75.34 (7) | C11—C10—C9 | 120.7 (3) |
| O1—Co1—N1i | 104.66 (7) | C11—C10—H10 | 119.7 |
| O2—Co1—N1i | 88.27 (8) | C9—C10—H10 | 119.7 |
| O2i—Co1—N1i | 91.73 (8) | C12—C11—C10 | 119.6 (3) |
| O1i—Co1—N1 | 104.66 (7) | C12—C11—H11 | 120.2 |
| O1—Co1—N1 | 75.34 (7) | C10—C11—H11 | 120.2 |
| O2—Co1—N1 | 91.73 (8) | C11—C12—C13 | 121.0 (3) |
| O2i—Co1—N1 | 88.27 (8) | C11—C12—H12 | 119.5 |
| N1i—Co1—N1 | 180.0 | C13—C12—H12 | 119.5 |
| C6—C1—C2 | 120.2 (3) | C12—C13—C8 | 119.1 (3) |
| C6—C1—H1 | 119.9 | C12—C13—H13 | 120.4 |
| C2—C1—H1 | 119.9 | C8—C13—H13 | 120.4 |
| C3—C2—C1 | 120.1 (3) | O2—C14—H14A | 109.5 |
| C3—C2—H2 | 120.0 | O2—C14—H14B | 109.5 |
| C1—C2—H2 | 120.0 | H14A—C14—H14B | 109.5 |
| C4—C3—C2 | 120.2 (3) | O2—C14—H14C | 109.5 |
| C4—C3—H3 | 119.9 | H14A—C14—H14C | 109.5 |
| C2—C3—H3 | 119.9 | H14B—C14—H14C | 109.5 |
| C3—C4—C5 | 120.6 (3) | N2—N1—C6 | 114.8 (2) |
| C3—C4—H4 | 119.7 | N2—N1—Co1 | 114.78 (15) |
| C5—C4—H4 | 119.7 | C6—N1—Co1 | 130.38 (16) |
| C4—C5—C6 | 119.5 (3) | N1—N2—C7 | 111.8 (2) |
| C4—C5—H5 | 120.3 | C7—N3—N4 | 112.2 (2) |
| C6—C5—H5 | 120.3 | N3—N4—C8 | 121.3 (3) |
| C1—C6—C5 | 119.4 (3) | N3—N4—H4' | 116 (2) |
| C1—C6—N1 | 116.5 (2) | C8—N4—H4' | 122 (2) |
| C5—C6—N1 | 124.1 (3) | C7—O1—Co1 | 114.33 (15) |
| O1—C7—N3 | 125.5 (2) | C14—O2—Co1 | 130.91 (19) |
| O1—C7—N2 | 123.8 (2) | C14—O2—H2' | 112 (3) |
| N3—C7—N2 | 110.8 (2) | Co1—O2—H2' | 116 (3) |
| C6—C1—C2—C3 | 0.6 (5) | O1—Co1—N1—C6 | 178.9 (2) |
| C1—C2—C3—C4 | 0.1 (5) | O2—Co1—N1—C6 | −91.5 (2) |
| C2—C3—C4—C5 | −0.5 (6) | O2i—Co1—N1—C6 | 88.5 (2) |
| C3—C4—C5—C6 | 0.4 (5) | N1i—Co1—N1—C6 | −89 (10) |
| C2—C1—C6—C5 | −0.8 (4) | C6—N1—N2—C7 | −178.5 (2) |
| C2—C1—C6—N1 | 178.5 (3) | Co1—N1—N2—C7 | 1.8 (2) |
| C4—C5—C6—C1 | 0.3 (5) | O1—C7—N2—N1 | −1.2 (3) |
| C4—C5—C6—N1 | −178.9 (3) | N3—C7—N2—N1 | 179.1 (2) |
| N4—C8—C9—C10 | 177.9 (3) | O1—C7—N3—N4 | 1.5 (4) |
| C13—C8—C9—C10 | −0.9 (5) | N2—C7—N3—N4 | −178.9 (2) |
| C8—C9—C10—C11 | 0.1 (5) | C7—N3—N4—C8 | −172.2 (2) |
| C9—C10—C11—C12 | 0.7 (5) | C9—C8—N4—N3 | −1.8 (4) |
| C10—C11—C12—C13 | −0.8 (5) | C13—C8—N4—N3 | 177.1 (3) |
| C11—C12—C13—C8 | 0.0 (5) | N3—C7—O1—Co1 | 179.6 (2) |
| C9—C8—C13—C12 | 0.9 (4) | N2—C7—O1—Co1 | −0.1 (3) |
| N4—C8—C13—C12 | −178.0 (3) | O1i—Co1—O1—C7 | 129 (3) |
| C1—C6—N1—N2 | 174.5 (2) | O2—Co1—O1—C7 | −90.99 (18) |
| C5—C6—N1—N2 | −6.3 (4) | O2i—Co1—O1—C7 | 89.01 (18) |
| C1—C6—N1—Co1 | −5.9 (3) | N1i—Co1—O1—C7 | −179.21 (17) |
| C5—C6—N1—Co1 | 173.3 (2) | N1—Co1—O1—C7 | 0.79 (17) |
| O1i—Co1—N1—N2 | 178.49 (15) | O1i—Co1—O2—C14 | 44.4 (3) |
| O1—Co1—N1—N2 | −1.51 (15) | O1—Co1—O2—C14 | −135.6 (3) |
| O2—Co1—N1—N2 | 88.07 (17) | O2i—Co1—O2—C14 | −89 (4) |
| O2i—Co1—N1—N2 | −91.93 (17) | N1i—Co1—O2—C14 | −30.9 (3) |
| N1i—Co1—N1—N2 | 91 (10) | N1—Co1—O2—C14 | 149.1 (3) |
| O1i—Co1—N1—C6 | −1.1 (2) |
| H··· | ||||
| N4—H4'···O1 | 0.78 (3) | 2.20 (3) | 2.587 (3) | 111 (2) |
| O2—H2'···N2ii | 0.81 (4) | 2.11 (4) | 2.899 (3) | 166 (3) |
| O2—H2'···N3ii | 0.81 (4) | 2.52 (4) | 3.161 (3) | 138 (3) |
Selected bond lengths (Å)
| Co1—O1 | 2.0263 (18) |
| Co1—O2 | 2.114 (2) |
| Co1—N1 | 2.193 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N4—H4′⋯O1 | 0.78 (3) | 2.20 (3) | 2.587 (3) | 111 (2) |
| O2—H2′⋯N2i | 0.81 (4) | 2.11 (4) | 2.899 (3) | 166 (3) |
| O2—H2′⋯N3i | 0.81 (4) | 2.52 (4) | 3.161 (3) | 138 (3) |
Symmetry code: (i) .