Literature DB >> 21579603

Bis(1,5-diphenyl-carbazonato)di-methano-lcobalt(II).

Yanmei Chen, Bin Xu, Shixiong She, Bin Hu, Yahong Li.   

Abstract

The structure of the title compound, [Co(C(13)H(11)N(4)O)(2)(CH(3)OH)(2)], is a mononuclear six-coordinated octa-n class="Chemical">hedral cobalt(II) complex of C(i) mol-ecular symmetry. The Co(II) ion is coordinated by two N atoms and two O atoms from two 1,5-biphenyl-carbazide ligands, and two O atoms from two methanol molecules. Two diphenyl-carbazidate ligands and the central Co(II) ion form the basal plane, with the two methanol mol-ecules located in axial positions. The crystal packing is defined by bifurcated O-H⋯N hydrogen bonding and intra-molecular N-H⋯O inter-actions.

Entities:  

Year:  2010        PMID: 21579603      PMCID: PMC2979696          DOI: 10.1107/S1600536809055305

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of biphenyl­carbazide for the analytical determination of chromium in biological materials, see: Yarbro & Flaschka (1976 ▶). For its coordination modes, see: Feigl (1924 ▶); n class="Chemical">Shafranskii & Mal’kova (1975a ▶,b ▶); Martynova et al. (1985 ▶); Turkington & Tracy (1958 ▶); Deshpande & Jain (1988 ▶). For related literature, see: Pankaj & Chauhan (2004 ▶); Sollott & Peterson (1969 ▶); Cazeneuve (1900a ▶,b ▶).

Experimental

Crystal data

[Co(C13H11N4O)2(CH4O)2] M = 601.53 Monoclinic, a = 6.492 (2) Å b = 8.926 (3) Å c = 25.159 (9) Å β = 92.372 (6)° V = 1456.7 (9) Å3 Z = 2 Mo Kα radiation μ = 0.64 mm−1 T = 296 K 0.35 × 0.28 × 0.27 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.808, T max = 0.847 6990 measured reflections 2564 independent reflections 2037 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.117 S = 1.08 2564 reflections 196 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.43 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809055305/kp2244sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809055305/kp2244Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C13H11N4O)2(CH4O)2]F(000) = 626
Mr = 601.53Dx = 1.371 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2392 reflections
a = 6.492 (2) Åθ = 2.4–24.6°
b = 8.926 (3) ŵ = 0.64 mm1
c = 25.159 (9) ÅT = 296 K
β = 92.372 (6)°Block, clear violet
V = 1456.7 (9) Å30.35 × 0.28 × 0.27 mm
Z = 2
Bruker SMART CCD area-detector diffractometer2564 independent reflections
Radiation source: fine-focus sealed tube2037 reflections with I > 2σ(I)
graphiteRint = 0.046
phi and ω scansθmax = 25.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −7→7
Tmin = 0.808, Tmax = 0.847k = −10→10
6990 measured reflectionsl = −20→29
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0652P)2 + 0.0401P] where P = (Fo2 + 2Fc2)/3
2564 reflections(Δ/σ)max < 0.001
196 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.43 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co11.00001.00001.00000.03524 (19)
C10.8530 (5)0.7374 (3)1.09426 (11)0.0528 (7)
H10.97580.78991.09140.063*
C20.8241 (6)0.6473 (4)1.13836 (11)0.0640 (9)
H20.92700.64041.16510.077*
C30.6446 (6)0.5688 (4)1.14251 (13)0.0642 (9)
H30.62560.50871.17210.077*
C40.4933 (5)0.5785 (4)1.10342 (14)0.0720 (10)
H40.37210.52411.10640.086*
C50.5185 (5)0.6687 (4)1.05925 (13)0.0634 (9)
H50.41450.67531.03280.076*
C60.7007 (4)0.7492 (3)1.05484 (10)0.0382 (6)
C70.6545 (4)0.9405 (3)0.93219 (10)0.0367 (6)
C80.4192 (4)1.0503 (3)0.80937 (10)0.0437 (6)
C90.2276 (5)0.9825 (3)0.80672 (13)0.0584 (8)
H90.19070.91570.83300.070*
C100.0906 (6)1.0150 (4)0.76451 (14)0.0710 (10)
H10−0.03850.96970.76270.085*
C110.1441 (6)1.1139 (4)0.72520 (13)0.0719 (10)
H110.05091.13610.69720.086*
C120.3356 (6)1.1794 (4)0.72765 (11)0.0648 (9)
H120.37201.24500.70090.078*
C130.4753 (5)1.1491 (3)0.76934 (10)0.0538 (7)
H130.60471.19400.77070.065*
C140.9161 (6)1.3027 (4)1.06416 (16)0.0849 (12)
H14A1.03191.27261.08660.127*
H14B0.80901.34051.08570.127*
H14C0.95801.37971.04030.127*
N10.7412 (3)0.8471 (2)1.01157 (8)0.0359 (5)
N20.6030 (3)0.8460 (2)0.97330 (8)0.0391 (5)
N30.5120 (3)0.9360 (3)0.89297 (8)0.0411 (5)
N40.5597 (4)1.0247 (3)0.85196 (9)0.0463 (6)
O10.8187 (3)1.0213 (2)0.93292 (7)0.0438 (5)
O20.8423 (3)1.1797 (2)1.03493 (9)0.0570 (6)
H4'0.660 (5)1.073 (3)0.8563 (11)0.048 (9)*
H2'0.720 (6)1.167 (4)1.0382 (13)0.084 (12)*
U11U22U33U12U13U23
Co10.0269 (3)0.0445 (3)0.0341 (3)−0.0019 (2)−0.00083 (18)−0.0004 (2)
C10.0589 (19)0.0546 (17)0.0445 (16)−0.0123 (14)−0.0024 (14)0.0054 (13)
C20.088 (3)0.0600 (19)0.0428 (16)−0.0077 (18)−0.0077 (16)0.0091 (14)
C30.086 (3)0.0534 (18)0.0543 (19)−0.0007 (18)0.0204 (18)0.0125 (15)
C40.057 (2)0.074 (2)0.086 (3)−0.0096 (18)0.0160 (19)0.029 (2)
C50.0419 (17)0.076 (2)0.073 (2)−0.0062 (16)0.0013 (15)0.0258 (17)
C60.0402 (14)0.0368 (13)0.0382 (14)0.0022 (11)0.0080 (11)−0.0002 (11)
C70.0284 (13)0.0454 (13)0.0362 (13)0.0017 (11)0.0003 (10)−0.0023 (11)
C80.0474 (17)0.0479 (15)0.0352 (14)0.0059 (12)−0.0044 (12)−0.0064 (11)
C90.064 (2)0.0593 (19)0.0508 (18)−0.0049 (15)−0.0145 (15)0.0038 (14)
C100.066 (2)0.078 (2)0.066 (2)−0.0084 (18)−0.0298 (17)0.0024 (18)
C110.087 (3)0.071 (2)0.0549 (19)0.013 (2)−0.0312 (18)−0.0007 (18)
C120.093 (3)0.0605 (19)0.0408 (17)0.0102 (18)−0.0044 (16)0.0036 (14)
C130.0610 (19)0.0583 (18)0.0420 (15)0.0018 (15)0.0001 (13)−0.0031 (13)
C140.058 (2)0.084 (3)0.113 (3)−0.0036 (19)0.015 (2)−0.047 (2)
N10.0296 (11)0.0426 (12)0.0355 (11)0.0026 (9)0.0028 (9)−0.0024 (9)
N20.0313 (11)0.0472 (13)0.0386 (12)0.0003 (9)0.0013 (9)−0.0009 (10)
N30.0342 (12)0.0524 (13)0.0365 (12)−0.0015 (10)−0.0017 (9)−0.0010 (10)
N40.0397 (14)0.0592 (16)0.0394 (13)−0.0065 (12)−0.0059 (10)0.0034 (11)
O10.0355 (10)0.0560 (12)0.0395 (10)−0.0074 (9)−0.0035 (8)0.0049 (8)
O20.0295 (11)0.0635 (13)0.0786 (15)−0.0035 (10)0.0100 (10)−0.0232 (11)
Co1—O1i2.0263 (18)C8—C91.383 (4)
Co1—O12.0263 (18)C8—N41.397 (3)
Co1—O22.114 (2)C8—C131.398 (4)
Co1—O2i2.114 (2)C9—C101.387 (4)
Co1—N1i2.193 (2)C9—H90.9300
Co1—N12.193 (2)C10—C111.381 (5)
C1—C61.375 (4)C10—H100.9300
C1—C21.389 (4)C11—C121.373 (5)
C1—H10.9300C11—H110.9300
C2—C31.368 (5)C12—C131.384 (4)
C2—H20.9300C12—H120.9300
C3—C41.363 (5)C13—H130.9300
C3—H30.9300C14—O21.395 (4)
C4—C51.387 (4)C14—H14A0.9600
C4—H40.9300C14—H14B0.9600
C5—C61.392 (4)C14—H14C0.9600
C5—H50.9300N1—N21.289 (3)
C6—N11.429 (3)N3—N41.347 (3)
C7—O11.286 (3)N4—H4'0.78 (3)
C7—N31.325 (3)O2—H2'0.81 (4)
C7—N21.386 (3)
O1i—Co1—O1179.999 (1)C9—C8—N4121.6 (3)
O1i—Co1—O289.97 (8)C9—C8—C13120.1 (3)
O1—Co1—O290.03 (8)N4—C8—C13118.3 (3)
O1i—Co1—O2i90.03 (8)C8—C9—C10119.5 (3)
O1—Co1—O2i89.97 (8)C8—C9—H9120.2
O2—Co1—O2i179.997 (1)C10—C9—H9120.2
O1i—Co1—N1i75.34 (7)C11—C10—C9120.7 (3)
O1—Co1—N1i104.66 (7)C11—C10—H10119.7
O2—Co1—N1i88.27 (8)C9—C10—H10119.7
O2i—Co1—N1i91.73 (8)C12—C11—C10119.6 (3)
O1i—Co1—N1104.66 (7)C12—C11—H11120.2
O1—Co1—N175.34 (7)C10—C11—H11120.2
O2—Co1—N191.73 (8)C11—C12—C13121.0 (3)
O2i—Co1—N188.27 (8)C11—C12—H12119.5
N1i—Co1—N1180.0C13—C12—H12119.5
C6—C1—C2120.2 (3)C12—C13—C8119.1 (3)
C6—C1—H1119.9C12—C13—H13120.4
C2—C1—H1119.9C8—C13—H13120.4
C3—C2—C1120.1 (3)O2—C14—H14A109.5
C3—C2—H2120.0O2—C14—H14B109.5
C1—C2—H2120.0H14A—C14—H14B109.5
C4—C3—C2120.2 (3)O2—C14—H14C109.5
C4—C3—H3119.9H14A—C14—H14C109.5
C2—C3—H3119.9H14B—C14—H14C109.5
C3—C4—C5120.6 (3)N2—N1—C6114.8 (2)
C3—C4—H4119.7N2—N1—Co1114.78 (15)
C5—C4—H4119.7C6—N1—Co1130.38 (16)
C4—C5—C6119.5 (3)N1—N2—C7111.8 (2)
C4—C5—H5120.3C7—N3—N4112.2 (2)
C6—C5—H5120.3N3—N4—C8121.3 (3)
C1—C6—C5119.4 (3)N3—N4—H4'116 (2)
C1—C6—N1116.5 (2)C8—N4—H4'122 (2)
C5—C6—N1124.1 (3)C7—O1—Co1114.33 (15)
O1—C7—N3125.5 (2)C14—O2—Co1130.91 (19)
O1—C7—N2123.8 (2)C14—O2—H2'112 (3)
N3—C7—N2110.8 (2)Co1—O2—H2'116 (3)
C6—C1—C2—C30.6 (5)O1—Co1—N1—C6178.9 (2)
C1—C2—C3—C40.1 (5)O2—Co1—N1—C6−91.5 (2)
C2—C3—C4—C5−0.5 (6)O2i—Co1—N1—C688.5 (2)
C3—C4—C5—C60.4 (5)N1i—Co1—N1—C6−89 (10)
C2—C1—C6—C5−0.8 (4)C6—N1—N2—C7−178.5 (2)
C2—C1—C6—N1178.5 (3)Co1—N1—N2—C71.8 (2)
C4—C5—C6—C10.3 (5)O1—C7—N2—N1−1.2 (3)
C4—C5—C6—N1−178.9 (3)N3—C7—N2—N1179.1 (2)
N4—C8—C9—C10177.9 (3)O1—C7—N3—N41.5 (4)
C13—C8—C9—C10−0.9 (5)N2—C7—N3—N4−178.9 (2)
C8—C9—C10—C110.1 (5)C7—N3—N4—C8−172.2 (2)
C9—C10—C11—C120.7 (5)C9—C8—N4—N3−1.8 (4)
C10—C11—C12—C13−0.8 (5)C13—C8—N4—N3177.1 (3)
C11—C12—C13—C80.0 (5)N3—C7—O1—Co1179.6 (2)
C9—C8—C13—C120.9 (4)N2—C7—O1—Co1−0.1 (3)
N4—C8—C13—C12−178.0 (3)O1i—Co1—O1—C7129 (3)
C1—C6—N1—N2174.5 (2)O2—Co1—O1—C7−90.99 (18)
C5—C6—N1—N2−6.3 (4)O2i—Co1—O1—C789.01 (18)
C1—C6—N1—Co1−5.9 (3)N1i—Co1—O1—C7−179.21 (17)
C5—C6—N1—Co1173.3 (2)N1—Co1—O1—C70.79 (17)
O1i—Co1—N1—N2178.49 (15)O1i—Co1—O2—C1444.4 (3)
O1—Co1—N1—N2−1.51 (15)O1—Co1—O2—C14−135.6 (3)
O2—Co1—N1—N288.07 (17)O2i—Co1—O2—C14−89 (4)
O2i—Co1—N1—N2−91.93 (17)N1i—Co1—O2—C14−30.9 (3)
N1i—Co1—N1—N291 (10)N1—Co1—O2—C14149.1 (3)
O1i—Co1—N1—C6−1.1 (2)
D—H···AD—HH···AD···AD—H···A
N4—H4'···O10.78 (3)2.20 (3)2.587 (3)111 (2)
O2—H2'···N2ii0.81 (4)2.11 (4)2.899 (3)166 (3)
O2—H2'···N3ii0.81 (4)2.52 (4)3.161 (3)138 (3)
Table 1

Selected bond lengths (Å)

Co1—O12.0263 (18)
Co1—O22.114 (2)
Co1—N12.193 (2)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4′⋯O10.78 (3)2.20 (3)2.587 (3)111 (2)
O2—H2′⋯N2i0.81 (4)2.11 (4)2.899 (3)166 (3)
O2—H2′⋯N3i0.81 (4)2.52 (4)3.161 (3)138 (3)

Symmetry code: (i) .

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