Literature DB >> 21579577

Bis(benzyl-sulfan-yl)methane.

Hojin Yang, Tae Ho Kim, Suk-Hee Moon, Jineun Kim.   

Abstract

In the title compound, C(15)H(16)S(2), the structure of the dithioalkyl chain is a helix with an all-cis conformation. The dihedral angle between the mean planes of the terminal aromatic rings is 74.60 (4)°. In the crystal structure, weak C-H⋯π inter-actions contribute to the stabilization of the packing.

Entities:  

Year:  2010        PMID: 21579577      PMCID: PMC2979583          DOI: 10.1107/S1600536810019641

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title ligand, see: Cohen et al. (1980 ▶). For related structures, see: Li et al. (2005 ▶); Tanaka & Ajiki (2005 ▶).

Experimental

Crystal data

C15H16S2 M = 260.40 Monoclinic, a = 5.5146 (1) Å b = 12.2628 (3) Å c = 20.0128 (5) Å β = 101.156 (1)° V = 1327.78 (5) Å3 Z = 4 Mo Kα radiation μ = 0.38 mm−1 T = 173 K 0.22 × 0.15 × 0.15 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.922, T max = 0.946 12942 measured reflections 3335 independent reflections 2977 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.082 S = 1.04 3335 reflections 155 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.29 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810019641/sj5008sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810019641/sj5008Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H16S2F(000) = 552
Mr = 260.40Dx = 1.303 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7825 reflections
a = 5.5146 (1) Åθ = 2.7–28.4°
b = 12.2628 (3) ŵ = 0.38 mm1
c = 20.0128 (5) ÅT = 173 K
β = 101.156 (1)°Block, colourless
V = 1327.78 (5) Å30.22 × 0.15 × 0.15 mm
Z = 4
Bruker APEXII CCD diffractometer3335 independent reflections
Radiation source: fine-focus sealed tube2977 reflections with I > 2σ(I)
graphiteRint = 0.033
Detector resolution: 10.0 pixels mm-1θmax = 28.4°, θmin = 2.0°
φ and ω scansh = −7→7
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −12→16
Tmin = 0.922, Tmax = 0.946l = −24→26
12942 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.031H-atom parameters constrained
wR(F2) = 0.082w = 1/[σ2(Fo2) + (0.0369P)2 + 0.4363P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
3335 reflectionsΔρmax = 0.30 e Å3
155 parametersΔρmin = −0.29 e Å3
0 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.030 (2)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.63212 (6)0.46872 (3)0.430321 (16)0.03123 (10)
S20.80471 (6)0.43167 (3)0.294901 (16)0.03327 (11)
C10.7958 (2)0.73297 (11)0.47700 (6)0.0318 (3)
H10.69900.71300.50950.038*
C20.9857 (3)0.80750 (11)0.49456 (7)0.0369 (3)
H21.01970.83770.53910.044*
C31.1262 (3)0.83815 (11)0.44745 (8)0.0376 (3)
H31.25790.88870.45970.045*
C41.0740 (3)0.79496 (11)0.38253 (7)0.0371 (3)
H41.16780.81700.34980.045*
C50.8848 (2)0.71936 (11)0.36495 (6)0.0324 (3)
H50.85080.68970.32030.039*
C60.7447 (2)0.68671 (10)0.41215 (6)0.0269 (2)
C70.5451 (2)0.60237 (11)0.39470 (7)0.0319 (3)
H7A0.49950.59590.34450.038*
H7B0.39700.62760.41140.038*
C80.8761 (2)0.43180 (11)0.38662 (7)0.0303 (3)
H8A0.93440.35790.40190.036*
H8B1.01580.48260.40140.036*
C90.5351 (2)0.34398 (11)0.27868 (6)0.0320 (3)
H9A0.39920.38080.29560.038*
H9B0.48220.33510.22880.038*
C100.5717 (2)0.23235 (10)0.31064 (6)0.0263 (2)
C110.7532 (2)0.16136 (11)0.29690 (6)0.0309 (3)
H110.85980.18390.26750.037*
C120.7799 (2)0.05829 (11)0.32574 (7)0.0327 (3)
H120.90410.01060.31580.039*
C130.6268 (2)0.02439 (11)0.36880 (7)0.0324 (3)
H130.6452−0.04630.38850.039*
C140.4464 (3)0.09429 (11)0.38292 (7)0.0344 (3)
H140.34060.07160.41250.041*
C150.4196 (2)0.19762 (11)0.35389 (7)0.0307 (3)
H150.29510.24510.36390.037*
U11U22U33U12U13U23
S10.03604 (18)0.02830 (18)0.03133 (17)−0.00231 (12)0.01147 (13)−0.00010 (12)
S20.04070 (19)0.02943 (18)0.03283 (17)−0.00462 (13)0.01497 (13)0.00064 (12)
C10.0353 (6)0.0333 (7)0.0270 (6)−0.0013 (5)0.0064 (5)0.0029 (5)
C20.0422 (7)0.0336 (7)0.0322 (6)−0.0033 (6)0.0008 (5)0.0007 (5)
C30.0336 (7)0.0275 (7)0.0505 (8)−0.0018 (5)0.0048 (6)0.0079 (6)
C40.0395 (7)0.0316 (7)0.0445 (7)0.0056 (6)0.0185 (6)0.0113 (6)
C50.0390 (7)0.0293 (6)0.0299 (6)0.0089 (5)0.0093 (5)0.0039 (5)
C60.0270 (6)0.0240 (6)0.0285 (5)0.0060 (5)0.0026 (4)0.0028 (4)
C70.0269 (6)0.0302 (6)0.0368 (6)0.0046 (5)0.0018 (5)−0.0015 (5)
C80.0263 (6)0.0291 (6)0.0349 (6)0.0019 (5)0.0042 (5)0.0005 (5)
C90.0345 (6)0.0295 (6)0.0302 (6)−0.0001 (5)0.0019 (5)0.0020 (5)
C100.0264 (5)0.0257 (6)0.0251 (5)−0.0019 (5)0.0009 (4)−0.0029 (4)
C110.0309 (6)0.0340 (7)0.0288 (6)−0.0006 (5)0.0085 (5)−0.0032 (5)
C120.0320 (6)0.0297 (6)0.0359 (6)0.0043 (5)0.0051 (5)−0.0072 (5)
C130.0355 (6)0.0231 (6)0.0364 (6)−0.0019 (5)0.0011 (5)−0.0015 (5)
C140.0347 (7)0.0305 (7)0.0399 (7)−0.0041 (5)0.0120 (5)0.0012 (5)
C150.0277 (6)0.0281 (6)0.0374 (6)0.0011 (5)0.0087 (5)−0.0027 (5)
S1—C81.7988 (13)C7—H7B0.9900
S1—C71.8144 (14)C8—H8A0.9900
S2—C81.8013 (13)C8—H8B0.9900
S2—C91.8125 (14)C9—C101.5079 (17)
C1—C21.3831 (19)C9—H9A0.9900
C1—C61.3942 (17)C9—H9B0.9900
C1—H10.9500C10—C151.3841 (18)
C2—C31.383 (2)C10—C111.3934 (18)
C2—H20.9500C11—C121.3854 (19)
C3—C41.381 (2)C11—H110.9500
C3—H30.9500C12—C131.382 (2)
C4—C51.389 (2)C12—H120.9500
C4—H40.9500C13—C141.383 (2)
C5—C61.3898 (18)C13—H130.9500
C5—H50.9500C14—C151.3899 (19)
C6—C71.5016 (18)C14—H140.9500
C7—H7A0.9900C15—H150.9500
C8—S1—C7101.67 (6)S2—C8—H8A108.0
C8—S2—C9101.13 (6)S1—C8—H8B108.0
C2—C1—C6120.80 (12)S2—C8—H8B108.0
C2—C1—H1119.6H8A—C8—H8B107.2
C6—C1—H1119.6C10—C9—S2115.14 (9)
C1—C2—C3120.19 (13)C10—C9—H9A108.5
C1—C2—H2119.9S2—C9—H9A108.5
C3—C2—H2119.9C10—C9—H9B108.5
C4—C3—C2119.65 (13)S2—C9—H9B108.5
C4—C3—H3120.2H9A—C9—H9B107.5
C2—C3—H3120.2C15—C10—C11118.46 (12)
C3—C4—C5120.26 (13)C15—C10—C9119.80 (11)
C3—C4—H4119.9C11—C10—C9121.73 (11)
C5—C4—H4119.9C12—C11—C10120.68 (12)
C4—C5—C6120.61 (12)C12—C11—H11119.7
C4—C5—H5119.7C10—C11—H11119.7
C6—C5—H5119.7C13—C12—C11120.38 (12)
C5—C6—C1118.46 (12)C13—C12—H12119.8
C5—C6—C7121.28 (11)C11—C12—H12119.8
C1—C6—C7120.25 (12)C12—C13—C14119.43 (12)
C6—C7—S1113.86 (8)C12—C13—H13120.3
C6—C7—H7A108.8C14—C13—H13120.3
S1—C7—H7A108.8C13—C14—C15120.14 (13)
C6—C7—H7B108.8C13—C14—H14119.9
S1—C7—H7B108.8C15—C14—H14119.9
H7A—C7—H7B107.7C10—C15—C14120.91 (12)
S1—C8—S2117.33 (7)C10—C15—H15119.5
S1—C8—H8A108.0C14—C15—H15119.5
C6—C1—C2—C30.7 (2)C9—S2—C8—S1−53.62 (9)
C1—C2—C3—C40.8 (2)C8—S2—C9—C10−55.87 (11)
C2—C3—C4—C5−1.4 (2)S2—C9—C10—C15123.62 (11)
C3—C4—C5—C60.4 (2)S2—C9—C10—C11−57.57 (14)
C4—C5—C6—C11.09 (18)C15—C10—C11—C120.22 (18)
C4—C5—C6—C7−177.97 (12)C9—C10—C11—C12−178.61 (11)
C2—C1—C6—C5−1.67 (19)C10—C11—C12—C13−0.15 (19)
C2—C1—C6—C7177.40 (12)C11—C12—C13—C140.00 (19)
C5—C6—C7—S1103.14 (12)C12—C13—C14—C150.1 (2)
C1—C6—C7—S1−75.91 (14)C11—C10—C15—C14−0.12 (18)
C8—S1—C7—C6−64.96 (10)C9—C10—C15—C14178.72 (12)
C7—S1—C8—S2−56.40 (9)C13—C14—C15—C100.0 (2)
Cg is the centroid of the C1–C6 ring.
D—H···AD—HH···AD···AD—H···A
C13—H13···Cgi0.952.853.71151
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C1–C6 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C13—H13⋯Cgi0.952.853.71151

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Rhodium-catalyzed reaction of thiols with polychloroalkanes in the presence of triethylamine.

Authors:  Ken Tanaka; Kaori Ajiki
Journal:  Org Lett       Date:  2005-04-14       Impact factor: 6.005

3.  Novel dithioether-silver(I) coordination architectures: structural diversities by varying the spacers and terminal groups of ligands.

Authors:  Jian-Rong Li; Xian-He Bu; Jiao Jiao; Wen-Ping Du; Xiu-Hua Xu; Ruo-Hua Zhang
Journal:  Dalton Trans       Date:  2005-01-10       Impact factor: 4.390

  3 in total

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