Literature DB >> 21579537

3-Phenyl-1H-pyrrolo[2,1-c][1,4]oxazin-1-one.

Salman Tariq Khan, Peng Yu, Suchada Chantrapromma, Yong-En Guo, Nighat Afza.   

Abstract

The mol-ecule of the title compound, C(13)H(9)NO(2), is slightly twisted with a dihedral angle of 4.85 (9)° between the nine-membered ring system and the phenyl ring. The nine non-H atoms of the 1H-pyrrolo[2,1-c][1,4]oxazin-1-one system are coplanar [r.m.s. deviation = 0.0122 (2) Å]. In the crystal, weak inter-molecular C-H⋯O inter-actions link mol-ecules into chains along [10]. The crystal studied was an inversion twin with a 0.48624 (9):0.51376 (9) domain ratio.

Entities:  

Year:  2010        PMID: 21579537      PMCID: PMC2979495          DOI: 10.1107/S1600536810017940

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity and applications of pyrrolo[1,2-a]pyrazine derivatives, see: Bélanger et al. (1983 ▶); Fu et al. (2002 ▶); Micheli et al. (2008 ▶). For a related structure, see: Khan et al. (2010 ▶). For standard bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C13H9NO2 M = 211.21 Monoclinic, a = 5.870 (1) Å b = 3.8345 (7) Å c = 21.733 (4) Å β = 91.059 (7)° V = 489.09 (15) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 113 K 0.22 × 0.18 × 0.08 mm

Data collection

Rigaku Saturn CCD area-detector diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.979, T max = 0.992 4358 measured reflections 1222 independent reflections 1092 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.085 S = 1.10 1222 reflections 147 parameters 1 restraint H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810017940/rz2449sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810017940/rz2449Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H9NO2F(000) = 220
Mr = 211.21Dx = 1.434 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1222 reflections
a = 5.870 (1) Åθ = 2.8–27.0°
b = 3.8345 (7) ŵ = 0.10 mm1
c = 21.733 (4) ÅT = 113 K
β = 91.059 (7)°Needle, colourless
V = 489.09 (15) Å30.22 × 0.18 × 0.08 mm
Z = 2
Rigaku Saturn CCD area-detector diffractometer1222 independent reflections
Radiation source: rotating anode1092 reflections with I > 2σ(I)
multilayerRint = 0.032
Detector resolution: 14.63 pixels mm-1θmax = 27.0°, θmin = 2.8°
ω and φ scansh = −7→7
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −4→4
Tmin = 0.979, Tmax = 0.992l = −26→27
4358 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.031H-atom parameters constrained
wR(F2) = 0.085w = 1/[σ2(Fo2) + (0.050P)2] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max < 0.001
1222 reflectionsΔρmax = 0.20 e Å3
147 parametersΔρmin = −0.19 e Å3
1 restraintExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.037 (9)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.4797 (2)0.4846 (4)0.25405 (5)0.0201 (4)
O20.7147 (2)0.7726 (4)0.31664 (6)0.0273 (4)
N10.1877 (2)0.3508 (4)0.34783 (7)0.0181 (4)
C10.0686 (3)0.3143 (6)0.40070 (8)0.0219 (5)
H1−0.07630.20670.40440.026*
C20.1959 (3)0.4614 (6)0.44782 (8)0.0232 (5)
H20.15460.47000.48990.028*
C30.3965 (3)0.5960 (6)0.42329 (9)0.0230 (5)
H30.51480.71400.44530.028*
C40.3895 (3)0.5244 (5)0.36106 (8)0.0186 (4)
C50.5406 (3)0.6064 (6)0.31182 (8)0.0198 (4)
C60.2775 (3)0.3039 (6)0.24323 (8)0.0177 (4)
C70.1330 (3)0.2396 (6)0.28844 (8)0.0189 (4)
H7−0.00570.11920.28020.023*
C80.2448 (3)0.1991 (6)0.17857 (8)0.0186 (4)
C90.4150 (3)0.2573 (6)0.13567 (8)0.0223 (5)
H90.55400.36510.14830.027*
C100.3819 (4)0.1584 (6)0.07468 (9)0.0258 (5)
H100.49870.19920.04590.031*
C110.1813 (4)0.0015 (6)0.05544 (8)0.0242 (5)
H110.1596−0.06510.01360.029*
C120.0115 (3)−0.0580 (6)0.09787 (8)0.0248 (5)
H12−0.1273−0.16510.08490.030*
C130.0429 (3)0.0377 (6)0.15879 (8)0.0220 (5)
H13−0.0738−0.00680.18750.026*
U11U22U33U12U13U23
O10.0165 (7)0.0229 (8)0.0210 (6)−0.0045 (6)0.0017 (5)0.0005 (7)
O20.0190 (7)0.0308 (9)0.0321 (8)−0.0093 (7)−0.0014 (5)0.0000 (7)
N10.0163 (8)0.0198 (10)0.0183 (8)−0.0017 (7)0.0007 (6)0.0014 (7)
C10.0206 (10)0.0251 (12)0.0202 (9)0.0008 (9)0.0047 (7)0.0043 (9)
C20.0263 (10)0.0249 (12)0.0185 (9)0.0048 (10)0.0025 (7)0.0021 (9)
C30.0233 (10)0.0222 (12)0.0234 (9)0.0015 (9)−0.0033 (7)−0.0017 (9)
C40.0161 (9)0.0173 (12)0.0224 (9)0.0000 (8)−0.0019 (7)0.0001 (9)
C50.0183 (10)0.0170 (11)0.0240 (9)0.0002 (9)−0.0017 (7)0.0007 (9)
C60.0146 (9)0.0166 (11)0.0220 (9)−0.0019 (8)−0.0010 (7)0.0017 (8)
C70.0172 (9)0.0207 (11)0.0187 (8)−0.0025 (8)−0.0012 (7)0.0002 (9)
C80.0193 (9)0.0168 (11)0.0197 (9)0.0027 (8)0.0009 (7)0.0020 (8)
C90.0202 (10)0.0237 (12)0.0229 (9)0.0017 (9)0.0011 (7)0.0015 (10)
C100.0289 (11)0.0275 (13)0.0211 (9)0.0049 (10)0.0064 (8)0.0034 (9)
C110.0310 (11)0.0237 (12)0.0178 (9)0.0066 (9)−0.0020 (7)−0.0001 (9)
C120.0239 (10)0.0248 (12)0.0255 (10)0.0016 (10)−0.0042 (7)−0.0020 (10)
C130.0199 (10)0.0243 (13)0.0219 (9)0.0000 (9)0.0030 (7)0.0003 (10)
O1—C51.380 (2)C6—C81.471 (2)
O1—C61.391 (2)C7—H70.9500
O2—C51.207 (2)C8—C91.397 (2)
N1—C11.363 (2)C8—C131.397 (3)
N1—C41.384 (2)C9—C101.389 (3)
N1—C71.391 (2)C9—H90.9500
C1—C21.377 (3)C10—C111.380 (3)
C1—H10.9500C10—H100.9500
C2—C31.400 (3)C11—C121.389 (3)
C2—H20.9500C11—H110.9500
C3—C41.380 (3)C12—C131.383 (3)
C3—H30.9500C12—H120.9500
C4—C51.438 (2)C13—H130.9500
C6—C71.333 (2)
C5—O1—C6121.88 (14)C6—C7—N1119.21 (18)
C1—N1—C4108.95 (15)C6—C7—H7120.4
C1—N1—C7129.57 (17)N1—C7—H7120.4
C4—N1—C7121.48 (15)C9—C8—C13118.58 (17)
N1—C1—C2107.74 (17)C9—C8—C6120.77 (17)
N1—C1—H1126.1C13—C8—C6120.65 (16)
C2—C1—H1126.1C10—C9—C8120.26 (19)
C1—C2—C3108.45 (17)C10—C9—H9119.9
C1—C2—H2125.8C8—C9—H9119.9
C3—C2—H2125.8C11—C10—C9120.78 (17)
C4—C3—C2106.83 (18)C11—C10—H10119.6
C4—C3—H3126.6C9—C10—H10119.6
C2—C3—H3126.6C10—C11—C12119.29 (18)
C3—C4—N1108.03 (16)C10—C11—H11120.4
C3—C4—C5132.71 (19)C12—C11—H11120.4
N1—C4—C5119.21 (16)C13—C12—C11120.47 (19)
O2—C5—O1117.52 (16)C13—C12—H12119.8
O2—C5—C4125.73 (18)C11—C12—H12119.8
O1—C5—C4116.75 (16)C12—C13—C8120.62 (17)
C7—C6—O1121.35 (17)C12—C13—H13119.7
C7—C6—C8125.48 (18)C8—C13—H13119.7
O1—C6—C8113.17 (15)
C4—N1—C1—C2−0.7 (2)C5—O1—C6—C8179.70 (17)
C7—N1—C1—C2178.7 (2)O1—C6—C7—N1−1.1 (3)
N1—C1—C2—C30.9 (2)C8—C6—C7—N1179.16 (18)
C1—C2—C3—C4−0.7 (2)C1—N1—C7—C6−179.8 (2)
C2—C3—C4—N10.3 (2)C4—N1—C7—C6−0.5 (3)
C2—C3—C4—C5177.6 (2)C7—C6—C8—C9−175.2 (2)
C1—N1—C4—C30.2 (2)O1—C6—C8—C95.0 (3)
C7—N1—C4—C3−179.20 (19)C7—C6—C8—C134.5 (3)
C1—N1—C4—C5−177.49 (18)O1—C6—C8—C13−175.29 (19)
C7—N1—C4—C53.1 (3)C13—C8—C9—C100.5 (3)
C6—O1—C5—O2−177.16 (18)C6—C8—C9—C10−179.8 (2)
C6—O1—C5—C42.6 (3)C8—C9—C10—C110.0 (3)
C3—C4—C5—O2−1.3 (4)C9—C10—C11—C12−0.1 (4)
N1—C4—C5—O2175.7 (2)C10—C11—C12—C13−0.2 (4)
C3—C4—C5—O1178.9 (2)C11—C12—C13—C80.7 (4)
N1—C4—C5—O1−4.0 (3)C9—C8—C13—C12−0.8 (3)
C5—O1—C6—C7−0.1 (3)C6—C8—C13—C12179.4 (2)
D—H···AD—HH···AD···AD—H···A
C7—H7···O2i0.952.273.109 (2)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7⋯O2i0.952.273.109 (2)147

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Phenylethynyl-pyrrolo[1,2-a]pyrazine: a new potent and selective tool in the mGluR5 antagonists arena.

Authors:  Fabrizio Micheli; Barbara Bertani; Andrea Bozzoli; Luca Crippa; Paolo Cavanni; Romano Di Fabio; Daniele Donati; Paola Marzorati; Giancarlo Merlo; Alfredo Paio; Lorenzo Perugini; Paola Zarantonello
Journal:  Bioorg Med Chem Lett       Date:  2008-02-14       Impact factor: 2.823

3.  3-Methyl-1H-pyrrolo[2,1-c][1,4]oxazin-1-one.

Authors:  Salman Tariq Khan; Peng Yu; Erbin Hua; Syed Nawazish Ali; Mehrun Nisa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-27

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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