Literature DB >> 21579521

4-[(Dimethyl-amino)methyl-idene]-2-(4-nitro-phen-yl)-1,3-oxazol-5(4H)-one.

Gilberto A Romeiro, Carlos M R Ribeiro, Solange M S V Wardell, James L Wardell, Seik Weng Ng, Edward R T Tiekink.   

Abstract

The title mol-ecule, C(12)H(11)N(3)O(4), is essentially planar, the r.m.s. deviation for all non-n class="Disease">H atoms being 0.068 Å. An intra-molecular C-H⋯N hydrogen bond occurs. The crystal packing is dominated by π-π inter-actions [shortest centroid-centroid distance = 3.6312 (16) Å], which lead to supra-molecular chains that are linked into a three-dimensional network via C-H⋯O contacts. The crystal was found to be a non-merohedral twin (twin law -1 0 0/0 -1 0/ 0.784 0 1), the fractional contribution of the minor component being approx-imately 22%.

Entities:  

Year:  2010        PMID: 21579521      PMCID: PMC2979566          DOI: 10.1107/S1600536810018635

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, synthetic uses and properties of 4-(N,N-di­methyl­amino­n class="Chemical">methyl­ene)-2-aryl-2-oxazolin-5-one derivatives, see: Singh & Singh (1994 ▶, 2008 ▶); Takahashi & Izawa (2005 ▶); Singh et al. (1994 ▶); Kmetic & Stanovnik (1995 ▶). For the Vilsmeier–Haack reaction, see: Meth-Cohn & Stanforth (1991 ▶). For related structures, see Vasuki et al. (2002 ▶); Vijayalakshmi et al. (1998 ▶). For the treatment of twinned diffraction data, see: Spek (2009 ▶).

Experimental

Crystal data

C12H11N3O4 M = 261.24 Monoclinic, a = 9.5313 (2) Å b = 9.5204 (3) Å c = 13.0349 (4) Å β = 106.661 (2)° V = 1133.15 (6) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 120 K 0.42 × 0.38 × 0.22 mm

Data collection

Nonius KappaCCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.661, T max = 1.000 14210 measured reflections 2581 independent reflections 2030 reflections with I > 2σ(I) R int = 0.071

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.220 S = 1.19 2581 reflections 176 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.30 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810018635/ez2209sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810018635/ez2209Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H11N3O4F(000) = 544
Mr = 261.24Dx = 1.531 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2714 reflections
a = 9.5313 (2) Åθ = 2.9–27.5°
b = 9.5204 (3) ŵ = 0.12 mm1
c = 13.0349 (4) ÅT = 120 K
β = 106.661 (2)°Block, red
V = 1133.15 (6) Å30.42 × 0.38 × 0.22 mm
Z = 4
Nonius KappaCCD area-detector diffractometer2581 independent reflections
Radiation source: Enraf Nonius FR591 rotating anode2030 reflections with I > 2σ(I)
10 cm confocal mirrorsRint = 0.071
Detector resolution: 9.091 pixels mm-1θmax = 27.4°, θmin = 3.1°
φ and ω scansh = −12→12
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −12→11
Tmin = 0.661, Tmax = 1.000l = −16→16
14210 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.065H-atom parameters constrained
wR(F2) = 0.220w = 1/[σ2(Fo2) + (0.0936P)2 + 1.6594P] where P = (Fo2 + 2Fc2)/3
S = 1.19(Δ/σ)max = 0.001
2581 reflectionsΔρmax = 0.33 e Å3
176 parametersΔρmin = −0.30 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.018 (5)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.3806 (2)0.5986 (2)0.33548 (17)0.0197 (5)
O20.2556 (3)0.4481 (2)0.20576 (17)0.0239 (6)
O30.8419 (3)1.1001 (3)0.6327 (2)0.0324 (6)
O40.7443 (3)1.0746 (3)0.76142 (19)0.0307 (6)
N10.2875 (3)0.5457 (3)0.4711 (2)0.0180 (6)
N20.0528 (3)0.3059 (3)0.4441 (2)0.0203 (6)
N30.7556 (3)1.0430 (3)0.6733 (2)0.0209 (6)
C10.3786 (3)0.6220 (3)0.4393 (2)0.0166 (6)
C20.2186 (3)0.4617 (3)0.3831 (2)0.0179 (6)
C30.2761 (3)0.4921 (3)0.2958 (2)0.0195 (7)
C40.1130 (3)0.3590 (3)0.3735 (2)0.0189 (7)
H40.07780.31990.30380.023*
C50.0939 (4)0.3462 (4)0.5569 (3)0.0237 (7)
H5A0.13780.26550.60120.036*
H5B0.00660.37680.57610.036*
H5C0.16490.42330.56910.036*
C6−0.0548 (4)0.1947 (4)0.4138 (3)0.0284 (8)
H6A−0.07800.17780.33660.043*
H6B−0.14400.22230.43170.043*
H6C−0.01520.10860.45260.043*
C70.4765 (3)0.7290 (3)0.4994 (2)0.0168 (6)
C80.4797 (3)0.7571 (3)0.6051 (2)0.0184 (6)
H80.41840.70560.63750.022*
C90.5715 (3)0.8590 (3)0.6624 (2)0.0185 (6)
H90.57350.87940.73420.022*
C100.6608 (3)0.9314 (3)0.6135 (2)0.0178 (6)
C110.6608 (3)0.9058 (3)0.5089 (2)0.0173 (6)
H110.72310.95710.47720.021*
C120.5676 (3)0.8035 (3)0.4519 (2)0.0175 (6)
H120.56550.78380.38000.021*
U11U22U33U12U13U23
O10.0239 (12)0.0203 (11)0.0177 (11)−0.0022 (9)0.0105 (9)−0.0010 (8)
O20.0307 (13)0.0242 (12)0.0187 (11)−0.0017 (10)0.0100 (10)−0.0029 (9)
O30.0323 (14)0.0382 (15)0.0291 (13)−0.0147 (12)0.0127 (11)−0.0044 (11)
O40.0397 (15)0.0328 (14)0.0219 (12)−0.0061 (12)0.0125 (11)−0.0075 (10)
N10.0195 (13)0.0171 (12)0.0183 (13)0.0003 (10)0.0067 (10)0.0004 (10)
N20.0209 (13)0.0163 (13)0.0248 (13)0.0015 (11)0.0082 (11)0.0025 (10)
N30.0219 (13)0.0210 (13)0.0195 (13)0.0017 (12)0.0056 (11)0.0024 (11)
C10.0193 (14)0.0179 (14)0.0143 (13)0.0046 (12)0.0073 (11)0.0029 (11)
C20.0198 (15)0.0172 (14)0.0173 (14)0.0032 (12)0.0065 (12)0.0009 (11)
C30.0218 (15)0.0165 (14)0.0207 (15)0.0022 (12)0.0068 (12)0.0030 (12)
C40.0222 (16)0.0156 (14)0.0198 (15)0.0042 (12)0.0076 (12)0.0024 (11)
C50.0270 (17)0.0235 (16)0.0246 (16)0.0024 (14)0.0136 (14)0.0033 (13)
C60.0247 (17)0.0210 (16)0.039 (2)−0.0050 (14)0.0077 (15)0.0059 (14)
C70.0182 (15)0.0145 (14)0.0185 (14)0.0035 (12)0.0062 (12)0.0022 (11)
C80.0201 (15)0.0188 (15)0.0184 (14)0.0018 (12)0.0089 (12)0.0040 (12)
C90.0215 (15)0.0193 (15)0.0158 (13)0.0052 (13)0.0070 (12)0.0030 (12)
C100.0174 (14)0.0152 (14)0.0198 (15)0.0025 (12)0.0036 (12)−0.0005 (11)
C110.0180 (14)0.0175 (14)0.0178 (14)0.0023 (12)0.0073 (11)0.0035 (11)
C120.0193 (14)0.0184 (14)0.0169 (14)0.0029 (12)0.0086 (12)0.0014 (11)
O1—C11.377 (3)C5—H5B0.9800
O1—C31.411 (4)C5—H5C0.9800
O2—C31.209 (4)C6—H6A0.9800
O3—N31.226 (4)C6—H6B0.9800
O4—N31.222 (4)C6—H6C0.9800
N1—C11.289 (4)C7—C81.394 (4)
N1—C21.398 (4)C7—C121.396 (4)
N2—C41.317 (4)C8—C91.375 (4)
N2—C61.448 (4)C8—H80.9500
N2—C51.460 (4)C9—C101.385 (4)
N3—C101.466 (4)C9—H90.9500
C1—C71.450 (4)C10—C111.385 (4)
C2—C41.382 (5)C11—C121.383 (4)
C2—C31.428 (4)C11—H110.9500
C4—H40.9500C12—H120.9500
C5—H5A0.9800
C1—O1—C3105.6 (2)H5B—C5—H5C109.5
C1—N1—C2105.0 (2)N2—C6—H6A109.5
C4—N2—C6120.5 (3)N2—C6—H6B109.5
C4—N2—C5123.9 (3)H6A—C6—H6B109.5
C6—N2—C5115.5 (3)N2—C6—H6C109.5
O4—N3—O3123.2 (3)H6A—C6—H6C109.5
O4—N3—C10118.1 (3)H6B—C6—H6C109.5
O3—N3—C10118.7 (3)C8—C7—C12120.0 (3)
N1—C1—O1115.2 (3)C8—C7—C1119.8 (3)
N1—C1—C7127.6 (3)C12—C7—C1120.2 (3)
O1—C1—C7117.2 (3)C9—C8—C7120.2 (3)
C4—C2—N1129.6 (3)C9—C8—H8119.9
C4—C2—C3120.5 (3)C7—C8—H8119.9
N1—C2—C3109.9 (3)C8—C9—C10118.7 (3)
O2—C3—O1120.4 (3)C8—C9—H9120.7
O2—C3—C2135.4 (3)C10—C9—H9120.7
O1—C3—C2104.3 (2)C11—C10—C9122.7 (3)
N2—C4—C2131.3 (3)C11—C10—N3118.5 (3)
N2—C4—H4114.4C9—C10—N3118.8 (3)
C2—C4—H4114.4C12—C11—C10118.1 (3)
N2—C5—H5A109.5C12—C11—H11120.9
N2—C5—H5B109.5C10—C11—H11120.9
H5A—C5—H5B109.5C11—C12—C7120.4 (3)
N2—C5—H5C109.5C11—C12—H12119.8
H5A—C5—H5C109.5C7—C12—H12119.8
C2—N1—C1—O1−0.3 (3)O1—C1—C7—C8−179.8 (3)
C2—N1—C1—C7179.1 (3)N1—C1—C7—C12−179.3 (3)
C3—O1—C1—N1−0.1 (3)O1—C1—C7—C120.1 (4)
C3—O1—C1—C7−179.5 (3)C12—C7—C8—C90.6 (5)
C1—N1—C2—C4178.8 (3)C1—C7—C8—C9−179.5 (3)
C1—N1—C2—C30.5 (3)C7—C8—C9—C10−0.7 (5)
C1—O1—C3—O2−178.9 (3)C8—C9—C10—C110.4 (5)
C1—O1—C3—C20.4 (3)C8—C9—C10—N3178.2 (3)
C4—C2—C3—O20.1 (6)O4—N3—C10—C11172.7 (3)
N1—C2—C3—O2178.6 (4)O3—N3—C10—C11−7.1 (4)
C4—C2—C3—O1−179.1 (3)O4—N3—C10—C9−5.1 (4)
N1—C2—C3—O1−0.6 (3)O3—N3—C10—C9175.0 (3)
C6—N2—C4—C2−178.4 (3)C9—C10—C11—C12−0.1 (5)
C5—N2—C4—C2−2.4 (5)N3—C10—C11—C12−177.9 (3)
N1—C2—C4—N2−3.9 (6)C10—C11—C12—C70.1 (4)
C3—C2—C4—N2174.2 (3)C8—C7—C12—C11−0.3 (4)
N1—C1—C7—C80.9 (5)C1—C7—C12—C11179.8 (3)
D—H···AD—HH···AD···AD—H···A
C5—H5c···N10.982.283.074 (5)137
C5—H5a···O2i0.982.533.504 (4)177
C5—H5c···O4ii0.982.573.259 (5)127
C9—H9···O1iii0.952.563.304 (4)135
C11—H11···O2iv0.952.453.144 (4)130
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5c⋯N10.982.283.074 (5)137
C5—H5a⋯O2i0.982.533.504 (4)177
C5—H5c⋯O4ii0.982.573.259 (5)127
C9—H9⋯O1iii0.952.563.304 (4)135
C11—H11⋯O2iv0.952.453.144 (4)130

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  2 in total
  1 in total

1.  4-[(3-Meth-oxy-anilino)methyl-idene]-2-phenyl-1,3-oxazol-5(4H)-one.

Authors:  Wan-Yun Huang; Ye Zhang; Kun Hu; Qing-Mei Lin; Xian-Xian Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-10
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.