Literature DB >> 21579501

N-[Bis(benzylamino)phosphoryl]-2,2,2-trichloroacetamide.

Vladimir A Ovchynnikov1.   

Abstract

In the title compound, C(16)H(17)Cl(3)N(3)O(2)P, the P atom has a slightly distorted tetra-hedral configuration. The conformations of the carbonyl and phosphoryl groups are anti to each other. In the crystal, inter-molecular N-H⋯O hydrogen bonds link the mol-ecules into infinite chains parallel to the b axis.

Entities:  

Year:  2010        PMID: 21579501      PMCID: PMC2979604          DOI: 10.1107/S1600536810017873

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of carbacyl­amido­phosphates as potential new ligands, see: Skopenko et al. (1996 ▶); Ovchynnikov et al. (1998 ▶); Znovjak et al. (2009 ▶); Gubina et al. (2009 ▶); Gowda et al. (2010 ▶); Amirkhanov et al. (1997a ▶); Safin et al. (2009 ▶). For their biological activity, see: Amirkhanov et al. (1996 ▶); Rebrova et al. (1982 ▶). For P=O bond lengths, see: Amirkhanov et al. (1997b ▶). For the synthesis of the title compound, see: Kirsanov & Derkach (1956 ▶).

Experimental

Crystal data

C16H17Cl3N3O2P M = 420.65 Triclinic, a = 9.116 Å b = 10.3586 (2) Å c = 11.7713 (2) Å α = 68.320 (1)° β = 67.762 (1)° γ = 86.469 (1)° V = 952.13 (3) Å3 Z = 2 Mo Kα radiation μ = 0.58 mm−1 T = 293 K 0.20 × 0.20 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur3 diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009 ▶) T min = 0.893, T max = 0.893 4976 measured reflections 3286 independent reflections 3069 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.103 S = 1.05 3286 reflections 226 parameters H-atom parameters constrained Δρmax = 0.62 e Å−3 Δρmin = −0.41 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2009 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810017873/dn2554sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810017873/dn2554Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H17Cl3N3O2PZ = 2
Mr = 420.65F(000) = 432
Triclinic, P1Dx = 1.467 Mg m3
Hall symbol: -P 1Melting point: 417 K
a = 9.116 ÅMo Kα radiation, λ = 0.71073 Å
b = 10.3586 (2) ÅCell parameters from 3594 reflections
c = 11.7713 (2) Åθ = 2.0–27.1°
α = 68.320 (1)°µ = 0.58 mm1
β = 67.762 (1)°T = 293 K
γ = 86.469 (1)°Block, colorless
V = 952.13 (3) Å30.20 × 0.20 × 0.20 mm
Oxford Diffraction Xcalibur3 diffractometer3286 independent reflections
Radiation source: Enhance (Mo) X-ray Source3069 reflections with I > 2σ(I)
graphiteRint = 0.016
Detector resolution: 16.1827 pixels mm-1θmax = 25.0°, θmin = 2.0°
ω scansh = −8→10
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009)k = −10→12
Tmin = 0.893, Tmax = 0.893l = −13→13
4976 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.103H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0496P)2 + 0.7601P] where P = (Fo2 + 2Fc2)/3
3286 reflections(Δ/σ)max < 0.001
226 parametersΔρmax = 0.62 e Å3
0 restraintsΔρmin = −0.40 e Å3
Experimental. CrysAlis RED, (Oxford Diffraction Ltd., 2007) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.82223 (7)0.78475 (7)0.14155 (6)0.04467 (17)
Cl20.49492 (8)0.81971 (8)0.16751 (6)0.0545 (2)
Cl30.70636 (11)1.05737 (6)0.09763 (7)0.0681 (3)
P10.47348 (6)0.66397 (5)0.59367 (5)0.02713 (15)
O10.4132 (2)0.51582 (15)0.64581 (15)0.0401 (4)
O20.6029 (2)0.94775 (15)0.37756 (16)0.0434 (4)
N10.5631 (2)0.71538 (17)0.42584 (16)0.0305 (4)
H10.58280.65230.39210.037*
N20.3308 (2)0.75943 (18)0.63801 (17)0.0304 (4)
H20.35310.83090.65110.036*
N30.6122 (2)0.7072 (2)0.63210 (18)0.0362 (4)
H30.70590.73490.57140.043*
C10.6048 (2)0.8506 (2)0.3430 (2)0.0292 (4)
C20.6555 (3)0.8776 (2)0.1924 (2)0.0331 (5)
C30.1656 (3)0.7297 (3)0.6568 (2)0.0411 (5)
H3B0.09550.76940.71850.049*
H3C0.13960.62940.69710.049*
C40.1320 (2)0.7852 (2)0.5313 (2)0.0351 (5)
C50.0480 (3)0.6995 (3)0.5043 (2)0.0449 (6)
H5A0.01780.60690.56140.054*
C60.0088 (3)0.7505 (3)0.3932 (3)0.0522 (7)
H6A−0.04720.69210.37670.063*
C70.0533 (3)0.8878 (3)0.3073 (3)0.0513 (7)
H7A0.02640.92240.23340.062*
C80.1382 (3)0.9738 (3)0.3321 (3)0.0502 (6)
H8A0.16901.06610.27420.060*
C90.1776 (3)0.9228 (3)0.4432 (2)0.0434 (6)
H9A0.23500.98130.45850.052*
C100.5851 (3)0.7012 (2)0.7652 (2)0.0363 (5)
H10A0.47260.67750.81960.044*
H10B0.61300.79320.75870.044*
C110.6781 (2)0.5975 (2)0.8338 (2)0.0302 (4)
C120.7278 (3)0.4795 (2)0.8055 (2)0.0358 (5)
H12A0.70760.46420.73950.043*
C130.8075 (3)0.3841 (2)0.8745 (2)0.0404 (5)
H13A0.84040.30580.85420.049*
C140.8382 (3)0.4048 (2)0.9736 (2)0.0423 (5)
H14A0.89180.34091.01950.051*
C150.7883 (3)0.5215 (3)1.0035 (2)0.0433 (6)
H15A0.80750.53551.07040.052*
C160.7100 (3)0.6174 (2)0.9342 (2)0.0371 (5)
H16A0.67800.69590.95440.045*
U11U22U33U12U13U23
Cl10.0426 (3)0.0533 (4)0.0418 (3)0.0090 (3)−0.0124 (3)−0.0263 (3)
Cl20.0497 (4)0.0798 (5)0.0460 (4)0.0072 (3)−0.0276 (3)−0.0271 (3)
Cl30.1147 (7)0.0268 (3)0.0370 (3)−0.0035 (3)−0.0111 (4)−0.0010 (3)
P10.0396 (3)0.0197 (3)0.0240 (3)0.0032 (2)−0.0134 (2)−0.0091 (2)
O10.0658 (11)0.0215 (7)0.0291 (8)−0.0007 (7)−0.0131 (7)−0.0099 (6)
O20.0678 (11)0.0236 (8)0.0377 (9)−0.0044 (7)−0.0141 (8)−0.0151 (7)
N10.0488 (10)0.0193 (8)0.0246 (9)0.0026 (7)−0.0129 (8)−0.0107 (7)
N20.0368 (9)0.0262 (9)0.0341 (9)0.0033 (7)−0.0160 (8)−0.0152 (7)
N30.0347 (10)0.0469 (11)0.0271 (9)0.0040 (8)−0.0122 (8)−0.0135 (8)
C10.0365 (11)0.0224 (10)0.0286 (10)0.0015 (8)−0.0121 (9)−0.0098 (8)
C20.0457 (12)0.0254 (10)0.0264 (10)0.0015 (9)−0.0130 (9)−0.0083 (8)
C30.0354 (12)0.0466 (13)0.0325 (12)−0.0013 (10)−0.0095 (9)−0.0083 (10)
C40.0267 (10)0.0426 (12)0.0342 (11)0.0029 (9)−0.0092 (9)−0.0147 (10)
C50.0396 (12)0.0473 (14)0.0432 (13)−0.0063 (10)−0.0106 (11)−0.0157 (11)
C60.0446 (14)0.0704 (18)0.0490 (15)−0.0061 (12)−0.0166 (12)−0.0298 (14)
C70.0426 (13)0.0755 (19)0.0417 (14)0.0074 (13)−0.0215 (11)−0.0230 (13)
C80.0509 (15)0.0487 (15)0.0487 (15)0.0046 (12)−0.0256 (12)−0.0091 (12)
C90.0460 (13)0.0406 (13)0.0484 (14)0.0012 (10)−0.0255 (11)−0.0138 (11)
C100.0413 (12)0.0419 (12)0.0343 (12)0.0056 (10)−0.0176 (10)−0.0205 (10)
C110.0308 (10)0.0335 (11)0.0243 (10)−0.0047 (8)−0.0079 (8)−0.0104 (8)
C120.0470 (12)0.0352 (11)0.0259 (10)−0.0025 (9)−0.0126 (9)−0.0126 (9)
C130.0503 (13)0.0304 (11)0.0333 (12)0.0023 (10)−0.0104 (10)−0.0096 (9)
C140.0462 (13)0.0383 (13)0.0347 (12)0.0011 (10)−0.0177 (10)−0.0029 (10)
C150.0568 (14)0.0461 (13)0.0322 (12)−0.0040 (11)−0.0239 (11)−0.0118 (10)
C160.0465 (13)0.0384 (12)0.0323 (11)0.0004 (10)−0.0166 (10)−0.0174 (10)
Cl1—C21.775 (2)C6—C71.381 (4)
Cl2—C21.775 (2)C6—H6A0.9300
Cl3—C21.763 (2)C7—C81.388 (4)
P1—O11.4787 (15)C7—H7A0.9300
P1—N21.6282 (17)C8—C91.392 (4)
P1—N31.6296 (19)C8—H8A0.9300
P1—N11.7055 (17)C9—H9A0.9300
O2—C11.213 (2)C10—C111.514 (3)
N1—C11.354 (3)C10—H10A0.9700
N1—H10.8600C10—H10B0.9700
N2—C31.472 (3)C11—C121.389 (3)
N2—H20.8600C11—C161.404 (3)
N3—C101.469 (3)C12—C131.389 (3)
N3—H30.8600C12—H12A0.9300
C1—C21.570 (3)C13—C141.387 (3)
C3—C41.516 (3)C13—H13A0.9300
C3—H3B0.9700C14—C151.385 (4)
C3—H3C0.9700C14—H14A0.9300
C4—C91.391 (3)C15—C161.384 (3)
C4—C51.398 (3)C15—H15A0.9300
C5—C61.391 (4)C16—H16A0.9300
C5—H5A0.9300
O1—P1—N2111.32 (10)C7—C6—C5120.0 (2)
O1—P1—N3119.71 (10)C7—C6—H6A120.0
N2—P1—N3104.09 (9)C5—C6—H6A120.0
O1—P1—N1106.89 (8)C6—C7—C8119.5 (2)
N2—P1—N1112.12 (9)C6—C7—H7A120.2
N3—P1—N1102.49 (9)C8—C7—H7A120.2
C1—N1—P1123.22 (14)C7—C8—C9120.5 (3)
C1—N1—H1118.4C7—C8—H8A119.8
P1—N1—H1118.4C9—C8—H8A119.8
C3—N2—P1123.37 (15)C4—C9—C8120.6 (2)
C3—N2—H2118.3C4—C9—H9A119.7
P1—N2—H2118.3C8—C9—H9A119.7
C10—N3—P1123.29 (15)N3—C10—C11114.51 (18)
C10—N3—H3118.4N3—C10—H10A108.6
P1—N3—H3118.4C11—C10—H10A108.6
O2—C1—N1124.99 (19)N3—C10—H10B108.6
O2—C1—C2120.05 (18)C11—C10—H10B108.6
N1—C1—C2114.96 (17)H10A—C10—H10B107.6
C1—C2—Cl3109.68 (14)C12—C11—C16118.3 (2)
C1—C2—Cl1109.66 (14)C12—C11—C10122.64 (18)
Cl3—C2—Cl1109.28 (12)C16—C11—C10119.02 (19)
C1—C2—Cl2109.45 (15)C11—C12—C13120.7 (2)
Cl3—C2—Cl2109.43 (12)C11—C12—H12A119.6
Cl1—C2—Cl2109.32 (11)C13—C12—H12A119.6
N2—C3—C4114.92 (18)C14—C13—C12120.5 (2)
N2—C3—H3B108.5C14—C13—H13A119.8
C4—C3—H3B108.5C12—C13—H13A119.8
N2—C3—H3C108.5C15—C14—C13119.4 (2)
C4—C3—H3C108.5C15—C14—H14A120.3
H3B—C3—H3C107.5C13—C14—H14A120.3
C9—C4—C5118.2 (2)C16—C15—C14120.3 (2)
C9—C4—C3121.5 (2)C16—C15—H15A119.8
C5—C4—C3120.2 (2)C14—C15—H15A119.8
C6—C5—C4121.1 (2)C15—C16—C11120.8 (2)
C6—C5—H5A119.4C15—C16—H16A119.6
C4—C5—H5A119.4C11—C16—H16A119.6
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.861.952.790 (2)167
N2—H2···O2ii0.862.233.055 (2)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.861.952.790 (2)167
N2—H2⋯O2ii0.862.233.055 (2)161

Symmetry codes: (i) ; (ii) .

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