Literature DB >> 21579483

4-(3-Methoxy-phen-yl)-1-(2-oxoindolin-3-yl-idene)thio-semicarbazide.

Humayun Pervez, Mohammad S Iqbal, Naveeda Saira, Muhammad Yaqub, M Nawaz Tahir.   

Abstract

In the title compound, C(16)H(14)N(4)O(2)S, intra-molecular N-H⋯N hydrogen bonding forms an S(5) ring, whereas N-H⋯O and C-H⋯S inter-actions complete S(6) ring motifs. In the crystal, mol-ecules form inversion dimers due to N-H⋯O inter-actions. The dimers are inter-linked through N-H⋯S hydrogen bonds and π-π inter-actions occur with a centroid-centroid distance of 3.8422 (11) Å between the meth-oxy-containing benzene ring and the five-membered heterocyclic ring.

Entities:  

Year:  2010        PMID: 21579483      PMCID: PMC2979529          DOI: 10.1107/S1600536810018052

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation and structures of biologically important N 4-aryl-substituted isatin-3-thio­semicarbazones, see: Pervez et al. (2007 ▶, 2008 ▶, 2009 ▶, 2010a ▶). For a related structure, see: Pervez et al. (2010b ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H14N4O2S M = 326.37 Monoclinic, a = 15.1793 (5) Å b = 7.2473 (2) Å c = 15.4764 (5) Å β = 111.179 (2)° V = 1587.55 (9) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 296 K 0.34 × 0.22 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.946, T max = 0.960 13861 measured reflections 3925 independent reflections 2898 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.125 S = 1.04 3925 reflections 209 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.35 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810018052/si2262sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810018052/si2262Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H14N4O2SF(000) = 680
Mr = 326.37Dx = 1.366 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2898 reflections
a = 15.1793 (5) Åθ = 3.2–28.3°
b = 7.2473 (2) ŵ = 0.22 mm1
c = 15.4764 (5) ÅT = 296 K
β = 111.179 (2)°Prism, yellow
V = 1587.55 (9) Å30.34 × 0.22 × 0.20 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer3925 independent reflections
Radiation source: fine-focus sealed tube2898 reflections with I > 2σ(I)
graphiteRint = 0.028
Detector resolution: 7.40 pixels mm-1θmax = 28.3°, θmin = 3.2°
ω scansh = −20→20
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −9→9
Tmin = 0.946, Tmax = 0.960l = −20→19
13861 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0539P)2 + 0.6227P] where P = (Fo2 + 2Fc2)/3
3925 reflections(Δ/σ)max < 0.001
209 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.19826 (11)0.3610 (2)0.45348 (11)0.0329 (3)
C20.26044 (11)0.3126 (2)0.54720 (11)0.0345 (3)
C30.35347 (12)0.2547 (3)0.58412 (12)0.0434 (4)
H30.38820.23320.54640.052*
C40.39313 (14)0.2298 (3)0.67919 (13)0.0515 (5)
H40.45550.19080.70570.062*
C50.34181 (15)0.2617 (3)0.73516 (13)0.0529 (5)
H50.37050.24460.79880.063*
C60.24859 (14)0.3187 (3)0.69884 (12)0.0491 (5)
H60.21400.34030.73670.059*
C70.20928 (11)0.3419 (2)0.60448 (11)0.0382 (4)
C80.10524 (11)0.4125 (2)0.46058 (11)0.0359 (4)
C90.17432 (11)0.4498 (2)0.22293 (11)0.0360 (4)
C100.30202 (12)0.3962 (2)0.16100 (12)0.0388 (4)
C110.24941 (12)0.3445 (2)0.07119 (12)0.0407 (4)
H110.18650.31030.05520.049*
C120.29128 (13)0.3440 (3)0.00497 (13)0.0446 (4)
C130.38568 (14)0.3931 (3)0.02993 (15)0.0539 (5)
H130.41390.3948−0.01430.065*
C140.43705 (14)0.4392 (3)0.11998 (16)0.0554 (5)
H140.50060.46890.13660.066*
C150.39605 (13)0.4423 (3)0.18678 (14)0.0477 (4)
H150.43130.47480.24760.057*
C160.14733 (15)0.2526 (3)−0.11290 (15)0.0613 (6)
H16A0.11420.3578−0.10230.092*
H16B0.13870.1496−0.07770.092*
H16C0.12300.2222−0.17760.092*
N10.11680 (10)0.3984 (2)0.55058 (10)0.0429 (4)
H10.07330.42100.57250.051*
N20.22156 (9)0.36975 (19)0.38155 (9)0.0351 (3)
N30.15482 (9)0.4293 (2)0.30214 (9)0.0374 (3)
H3A0.09920.45480.30130.045*
N40.26118 (10)0.3955 (2)0.23067 (10)0.0416 (4)
H4A0.29660.35520.28420.050*
O10.03312 (8)0.45962 (19)0.39631 (8)0.0452 (3)
O20.24526 (10)0.2944 (2)−0.08484 (9)0.0610 (4)
S10.09025 (3)0.53985 (8)0.13109 (3)0.04856 (16)
U11U22U33U12U13U23
C10.0311 (7)0.0360 (8)0.0318 (8)0.0010 (6)0.0115 (6)−0.0041 (6)
C20.0357 (8)0.0370 (9)0.0304 (8)0.0024 (6)0.0115 (6)−0.0028 (6)
C30.0409 (9)0.0480 (10)0.0403 (9)0.0111 (7)0.0136 (7)−0.0015 (8)
C40.0456 (10)0.0572 (12)0.0423 (10)0.0146 (9)0.0045 (8)0.0006 (9)
C50.0585 (12)0.0603 (12)0.0312 (9)0.0100 (9)0.0060 (8)0.0039 (8)
C60.0547 (11)0.0628 (12)0.0320 (9)0.0061 (9)0.0182 (8)−0.0004 (8)
C70.0370 (8)0.0444 (9)0.0329 (8)0.0019 (7)0.0123 (7)−0.0013 (7)
C80.0306 (7)0.0442 (9)0.0335 (8)−0.0012 (6)0.0121 (6)−0.0050 (7)
C90.0361 (8)0.0396 (9)0.0331 (8)−0.0034 (7)0.0136 (7)−0.0010 (7)
C100.0408 (9)0.0398 (9)0.0411 (9)0.0054 (7)0.0211 (7)0.0075 (7)
C110.0412 (9)0.0431 (10)0.0421 (9)0.0028 (7)0.0200 (7)0.0032 (7)
C120.0518 (10)0.0442 (10)0.0445 (10)0.0062 (8)0.0253 (8)0.0032 (8)
C130.0548 (11)0.0636 (13)0.0570 (12)0.0033 (10)0.0367 (10)0.0059 (10)
C140.0414 (10)0.0658 (13)0.0656 (13)−0.0035 (9)0.0272 (10)0.0046 (10)
C150.0415 (9)0.0565 (12)0.0465 (10)0.0005 (8)0.0174 (8)0.0036 (9)
C160.0634 (13)0.0705 (15)0.0487 (12)−0.0020 (11)0.0187 (10)−0.0053 (10)
N10.0337 (7)0.0646 (10)0.0332 (7)0.0050 (7)0.0154 (6)−0.0018 (7)
N20.0345 (7)0.0396 (8)0.0317 (7)0.0018 (6)0.0124 (6)−0.0014 (6)
N30.0303 (6)0.0520 (9)0.0304 (7)0.0027 (6)0.0114 (5)0.0015 (6)
N40.0355 (7)0.0579 (10)0.0330 (7)0.0072 (6)0.0143 (6)0.0079 (6)
O10.0303 (6)0.0680 (9)0.0342 (6)0.0061 (5)0.0081 (5)−0.0031 (6)
O20.0614 (9)0.0838 (11)0.0445 (8)0.0019 (8)0.0272 (7)−0.0089 (7)
S10.0377 (2)0.0708 (4)0.0363 (2)0.0074 (2)0.01228 (18)0.0104 (2)
C1—N21.286 (2)C10—C111.381 (2)
C1—C21.459 (2)C10—N41.425 (2)
C1—C81.503 (2)C11—C121.387 (2)
C2—C31.383 (2)C11—H110.9300
C2—C71.390 (2)C12—O21.359 (2)
C3—C41.386 (3)C12—C131.389 (3)
C3—H30.9300C13—C141.370 (3)
C4—C51.378 (3)C13—H130.9300
C4—H40.9300C14—C151.386 (3)
C5—C61.384 (3)C14—H140.9300
C5—H50.9300C15—H150.9300
C6—C71.374 (2)C16—O21.422 (3)
C6—H60.9300C16—H16A0.9600
C7—N11.410 (2)C16—H16B0.9600
C8—O11.2319 (19)C16—H16C0.9600
C8—N11.343 (2)N1—H10.8600
C9—N41.339 (2)N2—N31.3504 (18)
C9—N31.369 (2)N3—H3A0.8600
C9—S11.6624 (17)N4—H4A0.8600
C10—C151.377 (2)
N2—C1—C2126.25 (14)C10—C11—H11120.3
N2—C1—C8127.64 (14)C12—C11—H11120.3
C2—C1—C8105.94 (13)O2—C12—C11123.55 (17)
C3—C2—C7120.33 (15)O2—C12—C13116.72 (17)
C3—C2—C1132.91 (15)C11—C12—C13119.72 (18)
C7—C2—C1106.72 (13)C14—C13—C12119.75 (18)
C2—C3—C4117.73 (17)C14—C13—H13120.1
C2—C3—H3121.1C12—C13—H13120.1
C4—C3—H3121.1C13—C14—C15121.26 (18)
C5—C4—C3121.22 (17)C13—C14—H14119.4
C5—C4—H4119.4C15—C14—H14119.4
C3—C4—H4119.4C10—C15—C14118.52 (18)
C4—C5—C6121.48 (17)C10—C15—H15120.7
C4—C5—H5119.3C14—C15—H15120.7
C6—C5—H5119.3O2—C16—H16A109.5
C7—C6—C5117.13 (17)O2—C16—H16B109.5
C7—C6—H6121.4H16A—C16—H16B109.5
C5—C6—H6121.4O2—C16—H16C109.5
C6—C7—C2122.09 (16)H16A—C16—H16C109.5
C6—C7—N1128.44 (16)H16B—C16—H16C109.5
C2—C7—N1109.47 (14)C8—N1—C7111.39 (14)
O1—C8—N1127.11 (15)C8—N1—H1124.3
O1—C8—C1126.47 (15)C7—N1—H1124.3
N1—C8—C1106.42 (13)C1—N2—N3116.95 (13)
N4—C9—N3114.35 (14)N2—N3—C9121.05 (13)
N4—C9—S1128.21 (13)N2—N3—H3A119.5
N3—C9—S1117.43 (12)C9—N3—H3A119.5
C15—C10—C11121.28 (16)C9—N4—C10127.93 (14)
C15—C10—N4118.06 (16)C9—N4—H4A116.0
C11—C10—N4120.61 (15)C10—N4—H4A116.0
C10—C11—C12119.44 (16)C12—O2—C16117.57 (15)
N2—C1—C2—C3−4.6 (3)C10—C11—C12—C130.8 (3)
C8—C1—C2—C3179.95 (19)O2—C12—C13—C14−178.02 (19)
N2—C1—C2—C7172.98 (16)C11—C12—C13—C140.9 (3)
C8—C1—C2—C7−2.51 (18)C12—C13—C14—C15−1.6 (3)
C7—C2—C3—C4−0.8 (3)C11—C10—C15—C141.2 (3)
C1—C2—C3—C4176.49 (19)N4—C10—C15—C14178.50 (17)
C2—C3—C4—C50.0 (3)C13—C14—C15—C100.6 (3)
C3—C4—C5—C60.4 (3)O1—C8—N1—C7−179.55 (17)
C4—C5—C6—C70.1 (3)C1—C8—N1—C70.0 (2)
C5—C6—C7—C2−0.9 (3)C6—C7—N1—C8177.47 (19)
C5—C6—C7—N1−179.92 (19)C2—C7—N1—C8−1.6 (2)
C3—C2—C7—C61.3 (3)C2—C1—N2—N3−175.68 (15)
C1—C2—C7—C6−176.60 (17)C8—C1—N2—N3−1.2 (2)
C3—C2—C7—N1−179.52 (16)C1—N2—N3—C9177.49 (15)
C1—C2—C7—N12.6 (2)N4—C9—N3—N23.9 (2)
N2—C1—C8—O15.7 (3)S1—C9—N3—N2−175.20 (12)
C2—C1—C8—O1−178.91 (17)N3—C9—N4—C10178.85 (16)
N2—C1—C8—N1−173.84 (17)S1—C9—N4—C10−2.1 (3)
C2—C1—C8—N11.57 (19)C15—C10—N4—C9142.08 (19)
C15—C10—C11—C12−1.8 (3)C11—C10—N4—C9−40.6 (3)
N4—C10—C11—C12−179.12 (16)C11—C12—O2—C164.2 (3)
C10—C11—C12—O2179.65 (17)C13—C12—O2—C16−176.89 (19)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.862.042.875 (2)164
N3—H3A···O10.862.062.7441 (19)136
N4—H4A···N20.862.192.620 (2)110
N4—H4A···S1ii0.862.873.5806 (16)141
C11—H11···S10.932.743.212 (2)112
C8—O1···Cg3iii1.2319 (19)3.6366 (1)3.7399 (17)85.16 (10)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.862.042.875 (2)164
N3—H3A⋯O10.862.062.7441 (19)136
N4—H4A⋯N20.862.192.620 (2)110
N4—H4A⋯S1ii0.862.873.5806 (16)141
C11—H11⋯S10.932.743.212 (2)112

Symmetry codes: (i) ; (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and biological evaluation of some new N(4)-substituted isatin-3-thiosemicarbazones.

Authors:  Humayun Pervez; Zahid Hussain Chohan; Muhammad Ramzan; Faiz-Ul-Hassan Nasim; Khalid Mohammed Khan
Journal:  J Enzyme Inhib Med Chem       Date:  2009-04       Impact factor: 5.051

3.  Synthesis of some N4-substituted isatin-3-thiosemicarbazones.

Authors:  H Pervez; M S Iqbal; M Y Tahir; M I Choudhary; K M Khan
Journal:  Nat Prod Res       Date:  2007-11       Impact factor: 2.861

4.  4-(2-Fluoro-phen-yl)-1-(2-oxoindolin-3-yl-idene)thio-semicarbazide.

Authors:  Humayun Pervez; Muhammad Yaqub; Muhammad Ramzan; Mohammad S Iqbal; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-02

5.  In vitro cytotoxic, antibacterial, antifungal and urease inhibitory activities of some N4- substituted isatin-3-thiosemicarbazones.

Authors:  Humayun Pervez; Mohammad S Iqbal; Muhammad Younas Tahir; Faiz-ul-Hassan Nasim; Muhammad Iqbal Choudhary; Khalid Mohammed Khan
Journal:  J Enzyme Inhib Med Chem       Date:  2008-12       Impact factor: 5.051

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  2 in total

1.  4-(3-Nitro-phen-yl)-1-(2-oxoindolin-3-yl-idene)thio-semicarbazide.

Authors:  Humayun Pervez; Mohammad S Iqbal; Naveeda Saira; Muhammad Yaqub; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-22

2.  4-(3-Iodo-phen-yl)-1-(2-oxoindolin-3-yl-idene)thio-semicarbazide.

Authors:  Humayun Pervez; Muhammad Yaqub; Muhammad Ramzan; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16
  2 in total

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